Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	N	K	K	V	L	T	L	S	A	V	M	A	S	M	L	F	G	A	A	A	H	A	A	D	T	R	I	G	V	T	I	Y	K	Y	D	D	N	F	M	S	V	V	R	K	A	I	E	Q	D	A	K	A	A	P	D	V	Q	L	L
Secondary structure
SS confidence
Disorder		?	?																?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		M	N	D	S	Q	N	D	Q	S	K	Q	N	D	Q	I	D	V	L	L	A	K	G	V	K	A	L	A	I	N	L	V	D	P	A	A	A	G	T	V	I	E	K	A	R	G	Q	N	V	P	V	V	F	F	N	K	E	P	S	R	K
Secondary structure
SS confidence
Disorder																																																												?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		A	L	D	S	Y	D	K	A	Y	Y	V	G	T	D	S	K	E	S	G	I	I	Q	G	D	L	I	A	K	H	W	A	A	N	Q	G	W	D	L	N	K	D	G	Q	I	Q	F	V	L	L	K	G	E	P	G	H	P	D	A	E	A
Secondary structure
SS confidence
Disorder		?																																	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		R	T	T	Y	V	I	K	E	L	N	D	K	G	I	K	T	E	Q	L	Q	L	D	T	A	M	W	D	T	A	Q	A	K	D	K	M	D	A	W	L	S	G	P	N	A	N	K	I	E	V	V	I	A	N	N	D	A	M	A	M	G
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		A	V	E	A	L	K	A	H	N	K	S	S	I	P	V	F	G	V	D	A	L	P	E	A	L	A	L	V	K	S	G	A	L	A	G	T	V	L	N	D	A	N	N	Q	A	K	A	T	F	D	L	A	K	N	L	A	D	G	K	G
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.
Sequence		A	A	D	G	T	N	W	K	I	D	N	K	V	V	R	V	P	Y	V	G	V	D	K	D	N	L	A	E	F	S	K	K
Secondary structure
SS confidence
Disorder					?	?																										?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1gca chain A Region: 24 - 332 Aligned: 309 Modelled: 309 Confidence: 100.0% Identity: 94% Fold: Periplasmic binding protein-like I Superfamily: Periplasmic binding protein-like I Family: L-arabinose binding protein-like Phyre2 PDB 2fvy chain A domain 1 Region: 25 - 329 Aligned: 305 Modelled: 305 Confidence: 100.0% Identity: 100% Fold: Periplasmic binding protein-like I Superfamily: Periplasmic binding protein-like I Family: L-arabinose binding protein-like Phyre2 PDB 2rjo chain A Region: 25 - 332 Aligned: 293 Modelled: 298 Confidence: 100.0% Identity: 22% PDB header:signaling protein Chain: A: PDB Molecule:twin-arginine translocation pathway signal protein; PDBTitle: crystal structure of twin-arginine translocation pathway signal2 protein from burkholderia phytofirmans Phyre2 PDB 1tjy chain A Region: 23 - 329 Aligned: 291 Modelled: 307 Confidence: 100.0% Identity: 15% Fold: Periplasmic binding protein-like I Superfamily: Periplasmic binding protein-like I Family: L-arabinose binding protein-like Phyre2 PDB 8abp chain A Region: 25 - 332 Aligned: 294 Modelled: 308 Confidence: 100.0% Identity: 19% Fold: Periplasmic binding protein-like I Superfamily: Periplasmic binding protein-like I Family: L-arabinose binding protein-like Phyre2 PDB 3ma0 chain A Region: 24 - 330 Aligned: 290 Modelled: 307 Confidence: 100.0% Identity: 21% PDB header:sugar binding protein Chain: A: PDB Molecule:d-xylose-binding periplasmic protein; PDBTitle: closed liganded crystal structure of xylose binding protein from2 escherichia coli Phyre2 PDB 1jx6 chain A Region: 20 - 331 Aligned: 288 Modelled: 312 Confidence: 100.0% Identity: 17% Fold: Periplasmic binding protein-like I Superfamily: Periplasmic binding protein-like I Family: L-arabinose binding protein-like Phyre2 PDB 3o1h chain B Region: 25 - 332 Aligned: 280 Modelled: 297 Confidence: 100.0% Identity: 16% PDB header:signaling protein Chain: B: PDB Molecule:periplasmic protein tort; PDBTitle: crystal structure of the tors sensor domain - tort complex in the2 presence of tmao Phyre2 PDB 3g1w chain B Region: 25 - 329 Aligned: 286 Modelled: 305 Confidence: 100.0% Identity: 17% PDB header:transport protein Chain: B: PDB Molecule:sugar abc transporter; PDBTitle: crystal structure of sugar abc transporter (sugar-binding protein)2 from bacillus halodurans Phyre2 PDB 2vk2 chain A Region: 25 - 332 Aligned: 287 Modelled: 308 Confidence: 100.0% Identity: 19% PDB header:transport protein Chain: A: PDB Molecule:abc transporter periplasmic-binding protein ytfq; PDBTitle: crystal structure of a galactofuranose binding protein Phyre2 PDB 3d02 chain A Region: 25 - 329 Aligned: 287 Modelled: 305 Confidence: 100.0% Identity: 18% PDB header:sugar binding protein Chain: A: PDB Molecule:putative laci-type transcriptional regulator; PDBTitle: crystal structure of periplasmic sugar-binding protein2 (yp_001338366.1) from klebsiella pneumoniae subsp. pneumoniae mgh3 78578 at 1.30 a resolution Phyre2 PDB 3l49 chain D Region: 22 - 325 Aligned: 277 Modelled: 301 Confidence: 100.0% Identity: 17% PDB header:transport protein Chain: D: PDB Molecule:abc sugar (ribose) transporter, periplasmic PDBTitle: crystal structure of abc sugar transporter subunit from2 rhodobacter sphaeroides 2.4.1 Phyre2 PDB 2qvc chain C Region: 26 - 332 Aligned: 286 Modelled: 306 Confidence: 100.0% Identity: 21% PDB header:transport protein Chain: C: PDB Molecule:sugar abc transporter, periplasmic sugar-binding PDBTitle: crystal structure of a periplasmic sugar abc transporter2 from thermotoga maritima Phyre2 PDB 2fn9 chain A Region: 27 - 324 Aligned: 278 Modelled: 298 Confidence: 100.0% Identity: 19% PDB header:sugar binding protein Chain: A: PDB Molecule:ribose abc transporter, periplasmic ribose-binding protein; PDBTitle: thermotoga maritima ribose binding protein unliganded form Phyre2 PDB 3h75 chain A Region: 26 - 331 Aligned: 288 Modelled: 305 Confidence: 100.0% Identity: 16% PDB header:sugar binding protein Chain: A: PDB Molecule:periplasmic sugar-binding domain protein; PDBTitle: crystal structure of a periplasmic sugar-binding protein from the2 pseudomonas fluorescens Phyre2 PDB 3ksm chain A Region: 26 - 323 Aligned: 272 Modelled: 298 Confidence: 100.0% Identity: 17% PDB header:transport protein Chain: A: PDB Molecule:abc-type sugar transport system, periplasmic component; PDBTitle: crystal structure of abc-type sugar transport system, periplasmic2 component from hahella chejuensis Phyre2 PDB 3gbv chain B Region: 24 - 329 Aligned: 281 Modelled: 300 Confidence: 100.0% Identity: 12% PDB header:transcription regulator Chain: B: PDB Molecule:putative laci-family transcriptional regulator; PDBTitle: crystal structure of a putative laci transcriptional regulator from2 bacteroides fragilis Phyre2 PDB 3l6u chain A Region: 26 - 322 Aligned: 274 Modelled: 297 Confidence: 100.0% Identity: 21% PDB header:transport protein Chain: A: PDB Molecule:abc-type sugar transport system periplasmic PDBTitle: crystal structure of abc-type sugar transport system,2 periplasmic component from exiguobacterium sibiricum Phyre2 PDB 2ioy chain B Region: 26 - 327 Aligned: 274 Modelled: 302 Confidence: 100.0% Identity: 28% PDB header:sugar binding protein Chain: B: PDB Molecule:periplasmic sugar-binding protein; PDBTitle: crystal structure of thermoanaerobacter tengcongensis2 ribose binding protein Phyre2 PDB 1gud chain A Region: 27 - 323 Aligned: 281 Modelled: 297 Confidence: 100.0% Identity: 21% Fold: Periplasmic binding protein-like I Superfamily: Periplasmic binding protein-like I Family: L-arabinose binding protein-like Phyre2 PDB 2v9y chain A Region: 6 - 60 Aligned: 54 Modelled: 54 Confidence: 57.0% Identity: 19% PDB header:ligase Chain: A: PDB Molecule:phosphoribosylformylglycinamidine cyclo-ligase; PDBTitle: human aminoimidazole ribonucleotide synthetase Phyre2 1 d1gcaa_ 2 d2fvya1 3 c2rjoA_ 4 d1tjya_ 5 d8abpa_ 6 c3ma0A_ 7 d1jx6a_ 8 c3o1hB_ 9 c3g1wB_ 10 c2vk2A_ 11 c3d02A_ 12 c3l49D_ 13 c2qvcC_ 14 c2fn9A_ 15 c3h75A_ 16 c3ksmA_ 17 c3gbvB_ 18 c3l6uA_ 19 c2ioyB_ 20 d1guda_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 c2v9yA_ 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1gcaa_ 100.0 94 Fold:Periplasmic binding protein-like I Superfamily:Periplasmic binding protein-like I Family:L-arabinose binding protein-like 2 d2fvya1 100.0 100 Fold:Periplasmic binding protein-like I Superfamily:Periplasmic binding protein-like I Family:L-arabinose binding protein-like 3 c2rjoA_ 100.0 22 PDB header:signaling protein Chain: A: PDB Molecule:twin-arginine translocation pathway signal protein; PDBTitle: crystal structure of twin-arginine translocation pathway signal2 protein from burkholderia phytofirmans 4 d1tjya_ 100.0 15 Fold:Periplasmic binding protein-like I Superfamily:Periplasmic binding protein-like I Family:L-arabinose binding protein-like 5 d8abpa_ 100.0 19 Fold:Periplasmic binding protein-like I Superfamily:Periplasmic binding protein-like I Family:L-arabinose binding protein-like 6 c3ma0A_ 100.0 21 PDB header:sugar binding protein Chain: A: PDB Molecule:d-xylose-binding periplasmic protein; PDBTitle: closed liganded crystal structure of xylose binding protein from2 escherichia coli 7 d1jx6a_ 100.0 17 Fold:Periplasmic binding protein-like I Superfamily:Periplasmic binding protein-like I Family:L-arabinose binding protein-like 8 c3o1hB_ 100.0 16 PDB header:signaling protein Chain: B: PDB Molecule:periplasmic protein tort; PDBTitle: crystal structure of the tors sensor domain - tort complex in the2 presence of tmao 9 c3g1wB_ 100.0 17 PDB header:transport protein Chain: B: PDB Molecule:sugar abc transporter; PDBTitle: crystal structure of sugar abc transporter (sugar-binding protein)2 from bacillus halodurans 10 c2vk2A_ 100.0 19 PDB header:transport protein Chain: A: PDB Molecule:abc transporter periplasmic-binding protein ytfq; PDBTitle: crystal structure of a galactofuranose binding protein 11 c3d02A_ 100.0 18 PDB header:sugar binding protein Chain: A: PDB Molecule:putative laci-type transcriptional regulator; PDBTitle: crystal structure of periplasmic sugar-binding protein2 (yp_001338366.1) from klebsiella pneumoniae subsp. pneumoniae mgh3 78578 at 1.30 a resolution 12 c3l49D_ 100.0 17 PDB header:transport protein Chain: D: PDB Molecule:abc sugar (ribose) transporter, periplasmic PDBTitle: crystal structure of abc sugar transporter subunit from2 rhodobacter sphaeroides 2.4.1 13 c2qvcC_ 100.0 21 PDB header:transport protein Chain: C: PDB Molecule:sugar abc transporter, periplasmic sugar-binding PDBTitle: crystal structure of a periplasmic sugar abc transporter2 from thermotoga maritima 14 c2fn9A_ 100.0 19 PDB header:sugar binding protein Chain: A: PDB Molecule:ribose abc transporter, periplasmic ribose-binding protein; PDBTitle: thermotoga maritima ribose binding protein unliganded form 15 c3h75A_ 100.0 16 PDB header:sugar binding protein Chain: A: PDB Molecule:periplasmic sugar-binding domain protein; PDBTitle: crystal structure of a periplasmic sugar-binding protein from the2 pseudomonas fluorescens 16 c3ksmA_ 100.0 17 PDB header:transport protein Chain: A: PDB Molecule:abc-type sugar transport system, periplasmic component; PDBTitle: crystal structure of abc-type sugar transport system, periplasmic2 component from hahella chejuensis 17 c3gbvB_ 100.0 12 PDB header:transcription regulator Chain: B: PDB Molecule:putative laci-family transcriptional regulator; PDBTitle: crystal structure of a putative laci transcriptional regulator from2 bacteroides fragilis 18 c3l6uA_ 100.0 21 PDB header:transport protein Chain: A: PDB Molecule:abc-type sugar transport system periplasmic PDBTitle: crystal structure of abc-type sugar transport system,2 periplasmic component from exiguobacterium sibiricum 19 c2ioyB_ 100.0 28 PDB header:sugar binding protein Chain: B: PDB Molecule:periplasmic sugar-binding protein; PDBTitle: crystal structure of thermoanaerobacter tengcongensis2 ribose binding protein 20 d1guda_ 100.0 21 Fold:Periplasmic binding protein-like I Superfamily:Periplasmic binding protein-like I Family:L-arabinose binding protein-like 21 c2x7xA_ not modelled 100.0 26 PDB header:transferase Chain: A: PDB Molecule:sensor protein; PDBTitle: fructose binding periplasmic domain of hybrid two component2 system bt1754 22 d2dria_ not modelled 100.0 24 Fold:Periplasmic binding protein-like I Superfamily:Periplasmic binding protein-like I Family:L-arabinose binding protein-like 23 c3brsA_ not modelled 100.0 16 PDB header:transport protein Chain: A: PDB Molecule:periplasmic binding protein/laci transcriptional regulator; PDBTitle: crystal structure of sugar transporter from clostridium2 phytofermentans 24 c2iksA_ not modelled 100.0 15 PDB header:transcription Chain: A: PDB Molecule:dna-binding transcriptional dual regulator; PDBTitle: crystal structure of n-terminal truncated dna-binding transcriptional2 dual regulator from escherichia coli k12 25 c3h5oB_ not modelled 100.0 17 PDB header:transcription regulator Chain: B: PDB Molecule:transcriptional regulator gntr; PDBTitle: the crystal structure of transcription regulator gntr from2 chromobacterium violaceum 26 c3dbiA_ not modelled 100.0 19 PDB header:transcription regulator Chain: A: PDB Molecule:sugar-binding transcriptional regulator, laci family; PDBTitle: crystal structure of sugar-binding transcriptional regulator (laci2 family) from escherichia coli complexed with phosphate 27 c3brqA_ not modelled 100.0 16 PDB header:transcription regulator Chain: A: PDB Molecule:hth-type transcriptional regulator ascg; PDBTitle: crystal structure of the escherichia coli transcriptional repressor2 ascg 28 c3d8uA_ not modelled 100.0 11 PDB header:transcription regulator Chain: A: PDB Molecule:purr transcriptional regulator; PDBTitle: the crystal structure of a purr family transcriptional regulator from2 vibrio parahaemolyticus rimd 2210633 29 c3k4hA_ not modelled 100.0 13 PDB header:transcription regulator Chain: A: PDB Molecule:putative transcriptional regulator; PDBTitle: crystal structure of putative transcriptional regulator laci from2 bacillus cereus subsp. cytotoxis nvh 391-98 30 d2nzug1 not modelled 100.0 15 Fold:Periplasmic binding protein-like I Superfamily:Periplasmic binding protein-like I Family:L-arabinose binding protein-like 31 c3bblA_ not modelled 100.0 12 PDB header:regulatory protein Chain: A: PDB Molecule:regulatory protein of laci family; PDBTitle: crystal structure of a regulatory protein of laci family from2 chloroflexus aggregans 32 c3mizB_ not modelled 100.0 10 PDB header:transcription regulator Chain: B: PDB Molecule:putative transcriptional regulator protein, laci PDBTitle: crystal structure of a putative transcriptional regulator2 protein, lacl family from rhizobium etli 33 c3e3mA_ not modelled 100.0 14 PDB header:transcription Chain: A: PDB Molecule:transcriptional regulator, laci family; PDBTitle: crystal structure of a laci family transcriptional2 regulator from silicibacter pomeroyi 34 c3hcwB_ not modelled 100.0 9 PDB header:rna binding protein Chain: B: PDB Molecule:maltose operon transcriptional repressor; PDBTitle: crystal structure of probable maltose operon transcriptional repressor2 malr from staphylococcus areus 35 c2rgyA_ not modelled 100.0 13 PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional regulator, laci family; PDBTitle: crystal structure of transcriptional regulator of laci family from2 burkhoderia phymatum 36 c2o20H_ not modelled 100.0 12 PDB header:transcription Chain: H: PDB Molecule:catabolite control protein a; PDBTitle: crystal structure of transcription regulator ccpa of lactococcus2 lactis 37 c3rotA_ not modelled 100.0 16 PDB header:transport protein Chain: A: PDB Molecule:abc sugar transporter, periplasmic sugar binding protein; PDBTitle: crystal structure of abc sugar transporter (periplasmic sugar binding2 protein) from legionella pneumophila 38 c3kkeA_ not modelled 100.0 13 PDB header:transcription regulator Chain: A: PDB Molecule:laci family transcriptional regulator; PDBTitle: crystal structure of a laci family transcriptional regulator2 from mycobacterium smegmatis 39 c3c3kA_ not modelled 100.0 18 PDB header:isomerase Chain: A: PDB Molecule:alanine racemase; PDBTitle: crystal structure of an uncharacterized protein from actinobacillus2 succinogenes 40 c2qu7B_ not modelled 100.0 14 PDB header:transcription Chain: B: PDB Molecule:putative transcriptional regulator; PDBTitle: crystal structure of a putative transcription regulator2 from staphylococcus saprophyticus subsp. saprophyticus 41 c3g85A_ not modelled 100.0 14 PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional regulator (laci family); PDBTitle: crystal structure of laci family transcription regulator from2 clostridium acetobutylicum 42 c3egcF_ not modelled 100.0 16 PDB header:structural genomics, unknown function Chain: F: PDB Molecule:putative ribose operon repressor; PDBTitle: crystal structure of a putative ribose operon repressor from2 burkholderia thailandensis 43 c3cs3A_ not modelled 100.0 18 PDB header:transcription regulator Chain: A: PDB Molecule:sugar-binding transcriptional regulator, laci family; PDBTitle: crystal structure of sugar-binding transcriptional regulator (laci2 family) from enterococcus faecalis 44 c1jyeA_ not modelled 100.0 18 PDB header:transcription Chain: A: PDB Molecule:lactose operon repressor; PDBTitle: structure of a dimeric lac repressor with c-terminal deletion and k84l2 substitution 45 d1jyea_ not modelled 100.0 18 Fold:Periplasmic binding protein-like I Superfamily:Periplasmic binding protein-like I Family:L-arabinose binding protein-like 46 c3o74A_ not modelled 100.0 13 PDB header:transcription Chain: A: PDB Molecule:fructose transport system repressor frur; PDBTitle: crystal structure of cra transcriptional dual regulator from2 pseudomonas putida 47 c3gv0A_ not modelled 100.0 10 PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional regulator, laci family; PDBTitle: crystal structure of laci family transcription regulator from2 agrobacterium tumefaciens 48 c3ctpB_ not modelled 100.0 16 PDB header:transcription regulator Chain: B: PDB Molecule:periplasmic binding protein/laci transcriptional regulator; PDBTitle: crystal structure of periplasmic binding protein/laci transcriptional2 regulator from alkaliphilus metalliredigens qymf complexed with d-3 xylulofuranose 49 c3qk7C_ not modelled 100.0 14 PDB header:transcription regulator Chain: C: PDB Molecule:transcriptional regulators; PDBTitle: crystal structure of putative transcriptional regulator from yersinia2 pestis biovar microtus str. 91001 50 c1zvvA_ not modelled 100.0 16 PDB header:transcription/dna Chain: A: PDB Molecule:glucose-resistance amylase regulator; PDBTitle: crystal structure of a ccpa-crh-dna complex 51 d1tlfa_ not modelled 100.0 19 Fold:Periplasmic binding protein-like I Superfamily:Periplasmic binding protein-like I Family:L-arabinose binding protein-like 52 c3k9cA_ not modelled 100.0 17 PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional regulator, laci family protein; PDBTitle: crystal structure of laci transcriptional regulator from rhodococcus2 species. 53 c3jy6B_ not modelled 100.0 14 PDB header:transcription regulator Chain: B: PDB Molecule:transcriptional regulator, laci family; PDBTitle: crystal structure of laci transcriptional regulator from lactobacillus2 brevis 54 d1byka_ not modelled 100.0 12 Fold:Periplasmic binding protein-like I Superfamily:Periplasmic binding protein-like I Family:L-arabinose binding protein-like 55 c3clkB_ not modelled 100.0 14 PDB header:transcription regulator Chain: B: PDB Molecule:transcription regulator; PDBTitle: crystal structure of a transcription regulator from lactobacillus2 plantarum 56 d1dbqa_ not modelled 100.0 17 Fold:Periplasmic binding protein-like I Superfamily:Periplasmic binding protein-like I Family:L-arabinose binding protein-like 57 c3jvdA_ not modelled 100.0 16 PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional regulators; PDBTitle: crystal structure of putative transcription regulation repressor (laci2 family) from corynebacterium glutamicum 58 c3hs3A_ not modelled 100.0 15 PDB header:transcription regulator Chain: A: PDB Molecule:ribose operon repressor; PDBTitle: crystal structure of periplasmic binding ribose operon2 repressor protein from lactobacillus acidophilus 59 c2h0aA_ not modelled 100.0 17 PDB header:transcription Chain: A: PDB Molecule:transcriptional regulator; PDBTitle: crystal structure of probable transcription regulator from2 thermus thermophilus 60 c3huuC_ not modelled 100.0 10 PDB header:transcription regulator Chain: C: PDB Molecule:transcription regulator like protein; PDBTitle: crystal structure of transcription regulator like protein from2 staphylococcus haemolyticus 61 c3bilA_ not modelled 100.0 15 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:probable laci-family transcriptional regulator; PDBTitle: crystal structure of a probable laci family transcriptional2 regulator from corynebacterium glutamicum 62 c3gybB_ not modelled 100.0 14 PDB header:transcription regulator Chain: B: PDB Molecule:transcriptional regulators (laci-family PDBTitle: crystal structure of a laci-family transcriptional2 regulatory protein from corynebacterium glutamicum 63 c1bdhA_ not modelled 100.0 15 PDB header:transcription/dna Chain: A: PDB Molecule:protein (purine repressor); PDBTitle: purine repressor mutant-hypoxanthine-palindromic operator2 complex 64 c3kjxD_ not modelled 100.0 15 PDB header:transcription regulator Chain: D: PDB Molecule:transcriptional regulator, laci family; PDBTitle: crystal structure of a transcriptional regulator, lacl2 family protein from silicibacter pomeroyi 65 c3e61A_ not modelled 100.0 16 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative transcriptional repressor of ribose operon; PDBTitle: crystal structure of a putative transcriptional repressor of ribose2 operon from staphylococcus saprophyticus subsp. saprophyticus 66 c2hqbA_ not modelled 99.9 13 PDB header:transcription Chain: A: PDB Molecule:transcriptional activator of comk gene; PDBTitle: crystal structure of a transcriptional activator of comk2 gene from bacillus halodurans 67 c2qh8A_ not modelled 99.9 15 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of conserved domain protein from vibrio2 cholerae o1 biovar eltor str. n16961 68 c2fqxA_ not modelled 99.9 13 PDB header:transport protein Chain: A: PDB Molecule:membrane lipoprotein tmpc; PDBTitle: pnra from treponema pallidum complexed with guanosine 69 c3lftA_ not modelled 99.9 15 PDB header:structure genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: the crystal structure of the abc domain in complex with l-trp from2 streptococcus pneumonia to 1.35a 70 c3h5tA_ not modelled 99.9 12 PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional regulator, laci family; PDBTitle: crystal structure of a transcriptional regulator, lacl2 family protein from corynebacterium glutamicum 71 c3s99A_ not modelled 99.7 13 PDB header:lipid binding protein Chain: A: PDB Molecule:basic membrane lipoprotein; PDBTitle: crystal structure of a basic membrane lipoprotein from brucella2 melitensis, iodide soak 72 d2liva_ not modelled 98.5 11 Fold:Periplasmic binding protein-like I Superfamily:Periplasmic binding protein-like I Family:L-arabinose binding protein-like 73 c3sg0A_ not modelled 98.5 16 PDB header:signaling protein Chain: A: PDB Molecule:extracellular ligand-binding receptor; PDBTitle: the crystal structure of an extracellular ligand-binding receptor from2 rhodopseudomonas palustris haa2 74 c3snrA_ not modelled 98.5 11 PDB header:transport protein Chain: A: PDB Molecule:extracellular ligand-binding receptor; PDBTitle: rpd_1889 protein, an extracellular ligand-binding receptor from2 rhodopseudomonas palustris. 75 d1usga_ not modelled 98.4 11 Fold:Periplasmic binding protein-like I Superfamily:Periplasmic binding protein-like I Family:L-arabinose binding protein-like 76 c3n0wA_ not modelled 98.4 10 PDB header:transport protein Chain: A: PDB Molecule:abc branched chain amino acid family transporter, PDBTitle: crystal structure of a branched chain amino acid abc transporter2 periplasmic ligand-binding protein (bxe_c0949) from burkholderia3 xenovorans lb400 at 1.88 a resolution 77 c3t0nA_ not modelled 98.4 13 PDB header:signaling protein Chain: A: PDB Molecule:twin-arginine translocation pathway signal; PDBTitle: crystal structure of twin-arginine translocation pathway signal from2 rhodopseudomonas palustris bisb5 78 c3ip5A_ not modelled 98.3 16 PDB header:transport protein Chain: A: PDB Molecule:abc transporter, substrate binding protein (amino acid); PDBTitle: structure of atu2422-gaba receptor in complex with alanine 79 c3i45A_ not modelled 98.2 11 PDB header:signaling protein Chain: A: PDB Molecule:twin-arginine translocation pathway signal protein; PDBTitle: crystal structure of putative twin-arginine translocation pathway2 signal protein from rhodospirillum rubrum atcc 11170 80 c3lkbB_ not modelled 98.2 12 PDB header:transport protein Chain: B: PDB Molecule:probable branched-chain amino acid abc PDBTitle: crystal structure of a branched chain amino acid abc2 transporter from thermus thermophilus with bound valine 81 c3i09A_ not modelled 98.2 10 PDB header:transport protein Chain: A: PDB Molecule:periplasmic branched-chain amino acid-binding protein; PDBTitle: crystal structure of a periplasmic binding protein (bma2936) from2 burkholderia mallei at 1.80 a resolution 82 d3ckma1 not modelled 98.0 8 Fold:Periplasmic binding protein-like I Superfamily:Periplasmic binding protein-like I Family:L-arabinose binding protein-like 83 c3qi7A_ not modelled 98.0 12 PDB header:transcription Chain: A: PDB Molecule:putative transcriptional regulator; PDBTitle: crystal structure of a putative transcriptional regulator2 (yp_001089212.1) from clostridium difficile 630 at 1.86 a resolution 84 c3eafA_ not modelled 98.0 11 PDB header:transport protein Chain: A: PDB Molecule:abc transporter, substrate binding protein; PDBTitle: crystal structure of abc transporter, substrate binding protein2 aeropyrum pernix 85 c3n0xA_ not modelled 98.0 9 PDB header:transport protein Chain: A: PDB Molecule:possible substrate binding protein of abc transporter PDBTitle: crystal structure of an abc-type branched-chain amino acid transporter2 (rpa4397) from rhodopseudomonas palustris cga009 at 1.50 a resolution 86 c3hutA_ not modelled 97.9 10 PDB header:transport protein Chain: A: PDB Molecule:putative branched-chain amino acid abc PDBTitle: crystal structure of a putative branched-chain amino acid2 abc transporter from rhodospirillum rubrum 87 d1qo0a_ not modelled 97.9 7 Fold:Periplasmic binding protein-like I Superfamily:Periplasmic binding protein-like I Family:L-arabinose binding protein-like 88 c3lopA_ not modelled 97.9 7 PDB header:substrate binding protein Chain: A: PDB Molecule:substrate binding periplasmic protein; PDBTitle: crystal structure of substrate-binding periplasmic protein2 (pbp) from ralstonia solanacearum 89 c3td9A_ not modelled 97.7 14 PDB header:transport protein Chain: A: PDB Molecule:branched chain amino acid abc transporter, periplasmic PDBTitle: crystal structure of a leucine binding protein livk (tm1135) from2 thermotoga maritima msb8 at 1.90 a resolution 90 c1jdpA_ not modelled 97.4 13 PDB header:signaling protein Chain: A: PDB Molecule:atrial natriuretic peptide clearance receptor; PDBTitle: crystal structure of hormone/receptor complex 91 d1jdpa_ not modelled 97.4 13 Fold:Periplasmic binding protein-like I Superfamily:Periplasmic binding protein-like I Family:L-arabinose binding protein-like 92 c3h5lB_ not modelled 97.4 11 PDB header:transport protein Chain: B: PDB Molecule:putative branched-chain amino acid abc PDBTitle: crystal structure of a putative branched-chain amino acid2 abc transporter from silicibacter pomeroyi 93 d1ewka_ not modelled 97.4 11 Fold:Periplasmic binding protein-like I Superfamily:Periplasmic binding protein-like I Family:L-arabinose binding protein-like 94 c3q41B_ not modelled 96.9 12 PDB header:transport protein Chain: B: PDB Molecule:glutamate [nmda] receptor subunit zeta-1; PDBTitle: crystal structure of the glun1 n-terminal domain (ntd) 95 c1yk1B_ not modelled 96.8 14 PDB header:hormone/growth factor receptor Chain: B: PDB Molecule:atrial natriuretic peptide clearance receptor; PDBTitle: structure of natriuretic peptide receptor-c complexed with brain2 natriuretic peptide 96 c3om1A_ not modelled 96.8 12 PDB header:membrane protein Chain: A: PDB Molecule:glutamate receptor gluk5 (ka2); PDBTitle: crystal structure of the gluk5 (ka2) atd dimer at 1.7 angstrom2 resolution 97 c3h6hB_ not modelled 95.4 13 PDB header:membrane protein Chain: B: PDB Molecule:glutamate receptor, ionotropic kainate 2; PDBTitle: crystal structure of the glur6 amino terminal domain dimer assembly2 mpd form 98 c3sajB_ not modelled 93.1 10 PDB header:transport protein Chain: B: PDB Molecule:glutamate receptor 1; PDBTitle: crystal structure of glutamate receptor glua1 amino terminal domain 99 c3sm9A_ not modelled 92.1 10 PDB header:signaling protein Chain: A: PDB Molecule:metabotropic glutamate receptor 3; PDBTitle: crystal structure of metabotropic glutamate receptor 3 precursor in2 presence of ly341495 antagonist 100 c3lp6D_ not modelled 91.1 14 PDB header:lyase Chain: D: PDB Molecule:phosphoribosylaminoimidazole carboxylase catalytic subunit; PDBTitle: crystal structure of rv3275c-e60a from mycobacterium tuberculosis at2 1.7a resolution 101 c2wjxA_ not modelled 88.8 12 PDB header:transport protein Chain: A: PDB Molecule:glutamate receptor 2; PDBTitle: crystal structure of the human ionotropic glutamate2 receptor glur2 atd region at 4.1 a resolution 102 c1zxxA_ not modelled 88.4 13 PDB header:transferase Chain: A: PDB Molecule:6-phosphofructokinase; PDBTitle: the crystal structure of phosphofructokinase from lactobacillus2 delbrueckii 103 c2fw9A_ not modelled 88.0 12 PDB header:lyase Chain: A: PDB Molecule:n5-carboxyaminoimidazole ribonucleotide mutase; PDBTitle: structure of pure (n5-carboxyaminoimidazole ribonucleotide mutase)2 h59f from the acidophilic bacterium acetobacter aceti, at ph 8 104 d1u11a_ not modelled 87.4 12 Fold:Flavodoxin-like Superfamily:N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) Family:N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) 105 c3p3wC_ not modelled 86.3 10 PDB header:transport protein Chain: C: PDB Molecule:glutamate receptor 3; PDBTitle: structure of a dimeric glua3 n-terminal domain (ntd) at 4.2 a2 resolution 106 c3opyG_ not modelled 86.3 13 PDB header:transferase Chain: G: PDB Molecule:6-phosphofructo-1-kinase alpha-subunit; PDBTitle: crystal structure of pichia pastoris phosphofructokinase in the t-2 state 107 c3kg2A_ not modelled 86.2 13 PDB header:membrane protein, transport protein Chain: A: PDB Molecule:glutamate receptor 2; PDBTitle: ampa subtype ionotropic glutamate receptor in complex with competitive2 antagonist zk 200775 108 c3rggD_ not modelled 85.1 8 PDB header:lyase Chain: D: PDB Molecule:phosphoribosylaminoimidazole carboxylase, pure protein; PDBTitle: crystal structure of treponema denticola pure bound to air 109 d4pfka_ not modelled 84.1 17 Fold:Phosphofructokinase Superfamily:Phosphofructokinase Family:Phosphofructokinase 110 d1o4va_ not modelled 82.1 11 Fold:Flavodoxin-like Superfamily:N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) Family:N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) 111 d1xmpa_ not modelled 81.0 11 Fold:Flavodoxin-like Superfamily:N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) Family:N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) 112 c3opyH_ not modelled 80.4 15 PDB header:transferase Chain: H: PDB Molecule:6-phosphofructo-1-kinase beta-subunit; PDBTitle: crystal structure of pichia pastoris phosphofructokinase in the t-2 state 113 c3opyB_ not modelled 80.4 15 PDB header:transferase Chain: B: PDB Molecule:6-phosphofructo-1-kinase beta-subunit; PDBTitle: crystal structure of pichia pastoris phosphofructokinase in the t-2 state 114 c2e4wA_ not modelled 77.8 11 PDB header:signaling protein Chain: A: PDB Molecule:metabotropic glutamate receptor 3; PDBTitle: crystal structure of the extracellular region of the group ii2 metabotropic glutamate receptor complexed with 1s,3s-acpd 115 d1c2ya_ not modelled 76.4 8 Fold:Lumazine synthase Superfamily:Lumazine synthase Family:Lumazine synthase 116 c3qvjB_ not modelled 76.3 17 PDB header:isomerase Chain: B: PDB Molecule:putative hydantoin racemase; PDBTitle: allantoin racemase from klebsiella pneumoniae 117 c2uygF_ not modelled 76.2 11 PDB header:lyase Chain: F: PDB Molecule:3-dehydroquinate dehydratase; PDBTitle: crystallogaphic structure of the typeii 3-dehydroquinase2 from thermus thermophilus 118 c2h31A_ not modelled 75.8 14 PDB header:ligase, lyase Chain: A: PDB Molecule:multifunctional protein ade2; PDBTitle: crystal structure of human paics, a bifunctional carboxylase and2 synthetase in purine biosynthesis 119 d2ajta2 not modelled 72.2 14 Fold:FucI/AraA N-terminal and middle domains Superfamily:FucI/AraA N-terminal and middle domains Family:AraA N-terminal and middle domain-like 120 d1nqua_ not modelled 70.5 6 Fold:Lumazine synthase Superfamily:Lumazine synthase Family:Lumazine synthase

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0