PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c3n0wA_

Fold library id	PDB Header	Molecule	Title
c3n0wA_	PDB header: transport protein	Chain: A: PDB Molecule: abc branched chain amino acid family transporter,	PDBTitle: crystal structure of a branched chain amino acid abc transporter2 periplasmic ligand-binding protein (bxe_c0949) from burkholderia3 xenovorans lb400 at 1.88 a resolution

Links to external resources
Added to library: Sun Aug 29 03:22:04 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence Q V T L G V L T D X S S V Y A D S A G K G S V A A V Q L A I E D V G G K A L G Q P V K L V S A D Y Q X K T D V A L S I A R E W F D R D G V D

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S S T T T T T S T T T T T
T T
S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence A I F D V V N S G T A L A I N N L V K D K K K L A F I T A A A A D Q I G G T E C N G Y G I G F L Y N F T S I V K T V V Q A Q L A K G Y K T W

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T
S
T T T T T T T
S S
S
T T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence F L X L P D A A Y G D L X N A A I R R E L T A G G G Q I V G S V R F P F E T Q D F S S Y L L Q A K A S G A Q L I V S T S G G A A N I N I X K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S S T
T T
T
S

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . . . . . . . . 260 . . . . . . . . . 270 . . . . . . . . . 280

Sequence Q A R E F G L P S K T Q K V G G X I D I L T D V K S A G L R V X Q G Q E Y A T S F Y W N X D D R T R A F A K R F Y A K X G K X P T N N Q A G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
S
S S
B
T T
S
T T S S S S

. . . . . . . . . 290 . . . . . . . . . 300 . . . . . . . . . 310 . . . . . . . . . 320 . . . . . . . . . 330 . . . . . . . . . 340 . . . . . . . . . 350

Sequence G Y S A A L Q Y L K A V N A I G S K D P Q K V F A Y L K T I K F D D A V T R H G T L R P G G R L V R D X Y L V R A K K P E D Q K G D W D Y Y

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
T T
B
S S S
S B
T T S B
G G G
S T T

. . . . . . . . . 360 . . . . . . . . . 370 . . . .

Sequence D V V A T I G P E Q A F G P L S E S R C A X D K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
G G G
G G G

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	Q	V	T	L	G	V	L	T	D	X	S	S	V	Y	A	D	S	A	G	K	G	S	V	A	A	V	Q	L	A	I	E	D	V	G	G	K	A	L	G	Q	P	V	K	L	V	S	A	D	Y	Q	X	K	T	D	V	A	L	S	I	A	R	E	W	F	D	R	D	G	V	D
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)										S	S	S	T	T	T	T	T	S															T	T	T			T	T											T	T																S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	A	I	F	D	V	V	N	S	G	T	A	L	A	I	N	N	L	V	K	D	K	K	K	L	A	F	I	T	A	A	A	A	D	Q	I	G	G	T	E	C	N	G	Y	G	I	G	F	L	Y	N	F	T	S	I	V	K	T	V	V	Q	A	Q	L	A	K	G	Y	K	T	W
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																						T							S				T	T	T	T	T	T	T			S	S					S																	T	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	F	L	X	L	P	D	A	A	Y	G	D	L	X	N	A	A	I	R	R	E	L	T	A	G	G	G	Q	I	V	G	S	V	R	F	P	F	E	T	Q	D	F	S	S	Y	L	L	Q	A	K	A	S	G	A	Q	L	I	V	S	T	S	G	G	A	A	N	I	N	I	X	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)						S	S																		T											T	T															T		S
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Sequence	Q	A	R	E	F	G	L	P	S	K	T	Q	K	V	G	G	X	I	D	I	L	T	D	V	K	S	A	G	L	R	V	X	Q	G	Q	E	Y	A	T	S	F	Y	W	N	X	D	D	R	T	R	A	F	A	K	R	F	Y	A	K	X	G	K	X	P	T	N	N	Q	A	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)					T	T		S		S	S							B															T	T						S			T	T	S	S															S	S
	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350
Sequence	G	Y	S	A	A	L	Q	Y	L	K	A	V	N	A	I	G	S	K	D	P	Q	K	V	F	A	Y	L	K	T	I	K	F	D	D	A	V	T	R	H	G	T	L	R	P	G	G	R	L	V	R	D	X	Y	L	V	R	A	K	K	P	E	D	Q	K	G	D	W	D	Y	Y
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																T												T	T			B		S	S	S			S	B				T	T	S	B													G	G	G			S	T	T
	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.
Sequence	D	V	V	A	T	I	G	P	E	Q	A	F	G	P	L	S	E	S	R	C	A	X	D	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)															G	G	G				G	G	G