PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c2ioyB_

Fold library id	PDB Header	Molecule	Title
c2ioyB_	PDB header: sugar binding protein	Chain: B: PDB Molecule: periplasmic sugar-binding protein;	PDBTitle: crystal structure of thermoanaerobacter tengcongensis2 ribose binding protein

Links to external resources
Added to library: Tue Mar 16 12:27:50 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence K T I G L V I S T L N N P F F V T L K N G A E E K A K E L G Y K I I V E D S Q N D S S K E L S N V E D L I Q Q K V D V L L I N P V D S D A V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
S S S T
T T
T T
S
S S T T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence V T A I K E A N S K N I P V I T I D R S A N G G D V V C H I A S D N V K G G E M A A E F I A K A L K G K G N V V E L E G I P G A S A A R D R

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
S S
S S S
S
T T T
T T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence G K G F D E A I A K Y P D I K I V A K Q A A D F D R S K G L S V M E N I L Q A Q P K I D A V F A Q N D E M A L G A I K A I E A A N R Q G I I

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
T T
T T
S
S S T T
T T

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . . . . . . . . 260 . . . . . . . . . 270 . . . .

Sequence V V G F D G T E D A L K A I K E G K M A A T I A Q Q P A L M G S L G V E M A D K Y L K G E K I P N F I P A E L K L I T K E N V Q

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T S
T T
S
T T T

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	K	T	I	G	L	V	I	S	T	L	N	N	P	F	F	V	T	L	K	N	G	A	E	E	K	A	K	E	L	G	Y	K	I	I	V	E	D	S	Q	N	D	S	S	K	E	L	S	N	V	E	D	L	I	Q	Q	K	V	D	V	L	L	I	N	P	V	D	S	D	A	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)								S		S	S	S																		T									T	T															T	T		S							S	S	T	T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	V	T	A	I	K	E	A	N	S	K	N	I	P	V	I	T	I	D	R	S	A	N	G	G	D	V	V	C	H	I	A	S	D	N	V	K	G	G	E	M	A	A	E	F	I	A	K	A	L	K	G	K	G	N	V	V	E	L	E	G	I	P	G	A	S	A	A	R	D	R
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)										T	T							S	S			S	S	S			S																						T	T	T											T	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	G	K	G	F	D	E	A	I	A	K	Y	P	D	I	K	I	V	A	K	Q	A	A	D	F	D	R	S	K	G	L	S	V	M	E	N	I	L	Q	A	Q	P	K	I	D	A	V	F	A	Q	N	D	E	M	A	L	G	A	I	K	A	I	E	A	A	N	R	Q	G	I	I
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)									T	T		T	T										T	T																	S								S	S														T	T		T	T
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.
Sequence	V	V	G	F	D	G	T	E	D	A	L	K	A	I	K	E	G	K	M	A	A	T	I	A	Q	Q	P	A	L	M	G	S	L	G	V	E	M	A	D	K	Y	L	K	G	E	K	I	P	N	F	I	P	A	E	L	K	L	I	T	K	E	N	V	Q
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																	T	S																									T	T					S											T	T	T