PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c3e61A_

Fold library id	PDB Header	Molecule	Title
c3e61A_	PDB header: structural genomics, unknown function	Chain: A: PDB Molecule: putative transcriptional repressor of ribose	PDBTitle: crystal structure of a putative transcriptional repressor2 of ribose operon from staphylococcus saprophyticus subsp.3 saprophyticus

Links to external resources
Added to library: Tue Mar 16 13:47:19 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence L I G L L L P D M S N P F F T L I A R G V E D V A L A H G Y Q V L I G N S D N D I K K A Q G Y L A T F V S H N C T G M I S T A F N E N I I E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
T T S T T
T T
T T
S
G G G

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence N T L T D H I P F V F I D R I N H F K G G Q L Q A E V V R K G K G K N V L I V H E N L L I D A F H Q R V Q G I K Y I L D Q D Y K M L E A T L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
G G G
T T
S S
T T S
G G G

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence L D N D K K F I D L I K E L S I D S I I C S N D L L A I N V L G I V Q R Y H F K V P A E I Q I I G Y D N I P F S E M T Y P Q I T T I D Q S A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) G G S T
S S T T
T T T T
S B
G G G G T S S S
B

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . .

Sequence Y H L G E I A V S Q L L A L T V K H R G S T R H H H H H H

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

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Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	L	I	G	L	L	L	P	D	M	S	N	P	F	F	T	L	I	A	R	G	V	E	D	V	A	L	A	H	G	Y	Q	V	L	I	G	N	S	D	N	D	I	K	K	A	Q	G	Y	L	A	T	F	V	S	H	N	C	T	G	M	I	S	T	A	F	N	E	N	I	I	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)							S		T	T	S																	T	T									T	T															T	T		S						G	G	G
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	N	T	L	T	D	H	I	P	F	V	F	I	D	R	I	N	H	F	K	G	G	Q	L	Q	A	E	V	V	R	K	G	K	G	K	N	V	L	I	V	H	E	N	L	L	I	D	A	F	H	Q	R	V	Q	G	I	K	Y	I	L	D	Q	D	Y	K	M	L	E	A	T	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)												G	G	G																	T	T			S						S		T	T	S																							G	G	G
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	L	D	N	D	K	K	F	I	D	L	I	K	E	L	S	I	D	S	I	I	C	S	N	D	L	L	A	I	N	V	L	G	I	V	Q	R	Y	H	F	K	V	P	A	E	I	Q	I	I	G	Y	D	N	I	P	F	S	E	M	T	Y	P	Q	I	T	T	I	D	Q	S	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	G	G	S												T							S	S														T	T			T	T	T	T						S	B			G	G	G	G	T	S	S	S			B
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
Sequence	Y	H	L	G	E	I	A	V	S	Q	L	L	A	L	T	V	K	H	R	G	S	T	R	H	H	H	H	H	H
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																				T	T