PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c3rotA_

Fold library id	PDB Header	Molecule	Title
c3rotA_	PDB header: transport protein	Chain: A: PDB Molecule: abc sugar transporter, periplasmic sugar binding protein;	PDBTitle: crystal structure of abc sugar transporter (periplasmic sugar binding2 protein) from legionella pneumophila

Links to external resources
Added to library: Sat May 21 09:48:42 2011

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence R D K Y Y L I T H G S Q D P Y W T S L F Q G A K K A A E E L K V D L Q I L A P P G A N D V P K Q V Q F I E S A L A T Y P S G I A T T I P S D

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
S T
S S S
T
S
S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence T A F S K S L Q R A N K L N I P V I A V D T R P K D K T K N P Y L V F L G S D N L L A G K K L G E K A L E L T P S A K R A L V L N P Q P G H

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S T T T
S
S
T T T S
S
T T
S
T T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence I G L E K R A Y G I K T I L Q D K G I F F E E L D V G T D P N Q V Q S R V K S Y F K I H P E T N I I F C L T S Q A L D P L G Q X L L H P D R

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
S
T T
S S S

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . . . . . . . . 260 . . . . . . . . . 270 . . .

Sequence Y D F N Y Q P Q V Y S F D K T P N T V S L I H K K L V N Y V X D Q Q P F L X G Y L S I T Q L V L X N R Y Q L N P V N I N T A X

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
T T S

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

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Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	R	D	K	Y	Y	L	I	T	H	G	S	Q	D	P	Y	W	T	S	L	F	Q	G	A	K	K	A	A	E	E	L	K	V	D	L	Q	I	L	A	P	P	G	A	N	D	V	P	K	Q	V	Q	F	I	E	S	A	L	A	T	Y	P	S	G	I	A	T	T	I	P	S	D
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)									S				S																		T									S	S	S																T			S									S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	T	A	F	S	K	S	L	Q	R	A	N	K	L	N	I	P	V	I	A	V	D	T	R	P	K	D	K	T	K	N	P	Y	L	V	F	L	G	S	D	N	L	L	A	G	K	K	L	G	E	K	A	L	E	L	T	P	S	A	K	R	A	L	V	L	N	P	Q	P	G	H
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S	T	T											T							S				S		T	T	T	S			S																							T	T									S		T	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	I	G	L	E	K	R	A	Y	G	I	K	T	I	L	Q	D	K	G	I	F	F	E	E	L	D	V	G	T	D	P	N	Q	V	Q	S	R	V	K	S	Y	F	K	I	H	P	E	T	N	I	I	F	C	L	T	S	Q	A	L	D	P	L	G	Q	X	L	L	H	P	D	R
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																	T	T										S																	T	T							S	S													S
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.
Sequence	Y	D	F	N	Y	Q	P	Q	V	Y	S	F	D	K	T	P	N	T	V	S	L	I	H	K	K	L	V	N	Y	V	X	D	Q	Q	P	F	L	X	G	Y	L	S	I	T	Q	L	V	L	X	N	R	Y	Q	L	N	P	V	N	I	N	T	A	X
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		T																						T	T	S