PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c3d8uA_

Fold library id	PDB Header	Molecule	Title
c3d8uA_	PDB header: transcription regulator	Chain: A: PDB Molecule: purr transcriptional regulator;	PDBTitle: the crystal structure of a purr family transcriptional2 regulator from vibrio parahaemolyticus rimd 2210633

Links to external resources
Added to library: Tue Mar 16 13:54:35 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence Y S I A L I I P S L F E K A C A H F L P S F Q Q A L N K A G Y Q L L L G Y S D Y S I E Q E E K L L S T F L E S R P A G V V L F G S E H S Q R

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
S S
T S
T T
T S
S S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence T H Q L L E A S N T P V L E I A E L S S K A S Y L N I G V D H F E V G K A C T R H L I E Q G F K N V G F I G A R G N H S T L Q R Q L H G W Q

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
S S S
S S S S S
B
T T T
S
S S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence S A X I E N Y L T P D H F L T T H E A P S S Q L G A E G L A K L L L R D S S L N A L V C S H E E I A I G A L F E C H R R V L K V P T D I A I

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
S S
T T
T T
S S T T
T T T T

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . . . . . . . . 260 . . . .

Sequence I C L E G S S X G E H A Y P S L T S A E F D Y E R X G T K A A E K L L H A I K G E S X G F K L K R R A S T A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S S
T S S S
S
B
T T

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

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Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	Y	S	I	A	L	I	I	P	S	L	F	E	K	A	C	A	H	F	L	P	S	F	Q	Q	A	L	N	K	A	G	Y	Q	L	L	L	G	Y	S	D	Y	S	I	E	Q	E	E	K	L	L	S	T	F	L	E	S	R	P	A	G	V	V	L	F	G	S	E	H	S	Q	R
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)								S		S	S																		T	S									T	T														T	S									S	S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	T	H	Q	L	L	E	A	S	N	T	P	V	L	E	I	A	E	L	S	S	K	A	S	Y	L	N	I	G	V	D	H	F	E	V	G	K	A	C	T	R	H	L	I	E	Q	G	F	K	N	V	G	F	I	G	A	R	G	N	H	S	T	L	Q	R	Q	L	H	G	W	Q
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)									T							S	S	S		S	S	S	S	S					B															T	T	T										S		S	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	S	A	X	I	E	N	Y	L	T	P	D	H	F	L	T	T	H	E	A	P	S	S	Q	L	G	A	E	G	L	A	K	L	L	L	R	D	S	S	L	N	A	L	V	C	S	H	E	E	I	A	I	G	A	L	F	E	C	H	R	R	V	L	K	V	P	T	D	I	A	I
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)						T	T										S	S																T	T		T	T							S	S														T	T			T	T	T	T
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.
Sequence	I	C	L	E	G	S	S	X	G	E	H	A	Y	P	S	L	T	S	A	E	F	D	Y	E	R	X	G	T	K	A	A	E	K	L	L	H	A	I	K	G	E	S	X	G	F	K	L	K	R	R	A	S	T	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			S	S							T	S	S	S																									S				B								T	T