Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP0ABB0
DateThu Jan 5 11:15:04 GMT 2012
Unique Job ID1ec22c305cb8305d

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template c3oaaC_
Top template information
PDB header:hydrolase/transport protein
Chain: C: PDB Molecule:atp synthase subunit alpha;
PDBTitle: structure of the e.coli f1-atp synthase inhibited by subunit epsilon
Confidence and coverage
Confidence:100.0% Coverage: 95%
487 residues ( 95% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MQLNSTEISELIKQRIAQFNVVSEAHNEGTIVSVSDGVIRIHGLADCMQGEMISLPGNRY
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Disorder  ????















???????
































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   .........70.........80.........90.........100.........110.........120
Sequence  AIALNLERDSVGAVVMGPYADLAEGMKVKCTGRILEVPVGRGLLGRVVNTLGAPIDGKGP
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??















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   .........130.........140.........150.........160.........170.........180
Sequence  LDHDGFSAVEAIAPGVIERQSVDQPVQTGYKAVDSMIPIGRGQRELIIGDRQTGKTALAI
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??
???????

























?
?






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   .........190.........200.........210.........220.........230.........240
Sequence  DAIINQRDSGIKCIYVAIGQKASTISNVVRKLEEHGALANTIVVVATASESAALQYLAPY
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   .........250.........260.........270.........280.........290.........300
Sequence  AGCAMGEYFRDRGEDALIIYDDLSKQAVAYRQISLLLRRPPGREAFPGDVFYLHSRLLER
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?????????????


??






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   .........310.........320.........330.........340.........350.........360
Sequence  AARVNAEYVEAFTKGEVKGKTGSLTALPIIETQAGDVSAFVPTNVISITDGQIFLETNLF
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Disorder 




???????????????









???


























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   .........370.........380.........390.........400.........410.........420
Sequence  NAGIRPAVNPGISVSRVGGAAQTKIMKKLSGGIRTALAQYRELAAFSQFASDLDDATRKQ
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Disorder  ???








?

??

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   .........430.........440.........450.........460.........470.........480
Sequence  LDHGQKVTELLKQKQYAPMSVAQQSLVLFAAERGYLADVELSKIGSFEAALLAYVDRDHA
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   .........490.........500.........510...
Sequence  PLMQEINQTGGYNDEIEGKLKGILDSFKATQSW
Secondary structure 







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Disorder 






?
????















????
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Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 3oaa chain C

3D model

Region: 25 - 511
Aligned: 487
Modelled: 487
Confidence: 100.0%
Identity: 100%
PDB header:hydrolase/transport protein
Chain: C: PDB Molecule:atp synthase subunit alpha;
PDBTitle: structure of the e.coli f1-atp synthase inhibited by subunit epsilon

Phyre2

PDB 2r9v chain A

3D model

Region: 17 - 511
Aligned: 484
Modelled: 484
Confidence: 100.0%
Identity: 56%
PDB header:hydrolase
Chain: A: PDB Molecule:atp synthase subunit alpha;
PDBTitle: crystal structure of atp synthase subunit alpha (tm1612) from2 thermotoga maritima at 2.10 a resolution

Phyre2

PDB 2w6f chain A

3D model

Region: 24 - 511
Aligned: 477
Modelled: 477
Confidence: 100.0%
Identity: 60%
PDB header:hydrolase
Chain: A: PDB Molecule:atp synthase subunit alpha heart isoform,
PDBTitle: low resolution structures of bovine mitochondrial f1-atpase2 during controlled dehydration: hydration state 2.

Phyre2

PDB 1kmh chain A

3D model

Region: 24 - 511
Aligned: 477
Modelled: 488
Confidence: 100.0%
Identity: 55%
PDB header:hydrolase
Chain: A: PDB Molecule:atpase alpha subunit;
PDBTitle: crystal structure of spinach chloroplast f1-atpase2 complexed with tentoxin

Phyre2

PDB 1w0j chain B

3D model

Region: 23 - 511
Aligned: 470
Modelled: 478
Confidence: 100.0%
Identity: 60%
PDB header:hydrolase
Chain: B: PDB Molecule:atp synthase alpha chain heart isoform,
PDBTitle: beryllium fluoride inhibited bovine f1-atpase

Phyre2

PDB 2qe7 chain C

3D model

Region: 27 - 512
Aligned: 473
Modelled: 475
Confidence: 100.0%
Identity: 59%
PDB header:hydrolase
Chain: C: PDB Molecule:atp synthase subunit alpha;
PDBTitle: crystal structure of the f1-atpase from the thermoalkaliphilic2 bacterium bacillus sp. ta2.a1

Phyre2

PDB 3a5d chain B

3D model

Region: 28 - 511
Aligned: 470
Modelled: 484
Confidence: 100.0%
Identity: 21%
PDB header:hydrolase
Chain: B: PDB Molecule:v-type atp synthase alpha chain;
PDBTitle: inter-subunit interaction and quaternary rearrangement2 defined by the central stalk of prokaryotic v1-atpase

Phyre2

PDB 3a5d chain M

3D model

Region: 27 - 467
Aligned: 428
Modelled: 428
Confidence: 100.0%
Identity: 23%
PDB header:hydrolase
Chain: M: PDB Molecule:v-type atp synthase beta chain;
PDBTitle: inter-subunit interaction and quaternary rearrangement2 defined by the central stalk of prokaryotic v1-atpase

Phyre2

PDB 1fx0 chain B

3D model

Region: 27 - 463
Aligned: 422
Modelled: 422
Confidence: 100.0%
Identity: 25%
PDB header:hydrolase
Chain: B: PDB Molecule:atp synthase beta chain;
PDBTitle: crystal structure of the chloroplast f1-atpase from spinach

Phyre2

PDB 2dpy chain A

3D model

Region: 25 - 454
Aligned: 411
Modelled: 417
Confidence: 100.0%
Identity: 22%
PDB header:hydrolase
Chain: A: PDB Molecule:flagellum-specific atp synthase;
PDBTitle: crystal structure of the flagellar type iii atpase flii

Phyre2

PDB 2w6j chain D

3D model

Region: 28 - 463
Aligned: 421
Modelled: 421
Confidence: 100.0%
Identity: 24%
PDB header:hydrolase
Chain: D: PDB Molecule:atp synthase subunit beta, mitochondrial;
PDBTitle: low resolution structures of bovine mitochondrial f1-atpase2 during controlled dehydration: hydration state 5.

Phyre2

PDB 2jiz chain D

3D model

Region: 28 - 463
Aligned: 421
Modelled: 421
Confidence: 100.0%
Identity: 24%
PDB header:hydrolase
Chain: D: PDB Molecule:atp synthase subunit beta;
PDBTitle: the structure of f1-atpase inhibited by resveratrol.

Phyre2

PDB 1sky chain E

3D model

Region: 27 - 471
Aligned: 430
Modelled: 430
Confidence: 100.0%
Identity: 26%
PDB header:atp synthase
Chain: E: PDB Molecule:f1-atpase;
PDBTitle: crystal structure of the nucleotide free alpha3beta3 sub-complex of2 f1-atpase from the thermophilic bacillus ps3

Phyre2

PDB 2c61 chain A

3D model

Region: 36 - 479
Aligned: 414
Modelled: 431
Confidence: 100.0%
Identity: 24%
PDB header:hydrolase
Chain: A: PDB Molecule:a-type atp synthase non-catalytic subunit b;
PDBTitle: crystal structure of the non-catalytic b subunit of a-type2 atpase from m. mazei go1

Phyre2

PDB 2obl chain A

3D model

Region: 95 - 452
Aligned: 340
Modelled: 343
Confidence: 100.0%
Identity: 27%
PDB header:hydrolase
Chain: A: PDB Molecule:escn;
PDBTitle: structural and biochemical analysis of a prototypical atpase from the2 type iii secretion system of pathogenic bacteria

Phyre2

PDB 1vdz chain A

3D model

Region: 24 - 509
Aligned: 453
Modelled: 468
Confidence: 100.0%
Identity: 21%
PDB header:hydrolase
Chain: A: PDB Molecule:a-type atpase subunit a;
PDBTitle: crystal structure of a-type atpase catalytic subunit a from2 pyrococcus horikoshii ot3

Phyre2

PDB 2jdi chain A domain 3

3D model

Region: 95 - 382
Aligned: 277
Modelled: 277
Confidence: 100.0%
Identity: 72%
Fold: P-loop containing nucleoside triphosphate hydrolases
Superfamily: P-loop containing nucleoside triphosphate hydrolases
Family: RecA protein-like (ATPase-domain)

Phyre2

PDB 1sky chain B domain 3

3D model

Region: 96 - 382
Aligned: 276
Modelled: 287
Confidence: 100.0%
Identity: 68%
Fold: P-loop containing nucleoside triphosphate hydrolases
Superfamily: P-loop containing nucleoside triphosphate hydrolases
Family: RecA protein-like (ATPase-domain)

Phyre2

PDB 1fx0 chain A domain 3

3D model

Region: 96 - 382
Aligned: 276
Modelled: 287
Confidence: 100.0%
Identity: 66%
Fold: P-loop containing nucleoside triphosphate hydrolases
Superfamily: P-loop containing nucleoside triphosphate hydrolases
Family: RecA protein-like (ATPase-domain)

Phyre2

PDB 2jdi chain D domain 3

3D model

Region: 95 - 377
Aligned: 268
Modelled: 268
Confidence: 100.0%
Identity: 29%
Fold: P-loop containing nucleoside triphosphate hydrolases
Superfamily: P-loop containing nucleoside triphosphate hydrolases
Family: RecA protein-like (ATPase-domain)

Phyre2

PDB 1mab chain A domain 2

3D model

Region: 9 - 94
Aligned: 85
Modelled: 85
Confidence: 99.5%
Identity: 35%
Fold: Domain of alpha and beta subunits of F1 ATP synthase-like
Superfamily: N-terminal domain of alpha and beta subunits of F1 ATP synthase
Family: N-terminal domain of alpha and beta subunits of F1 ATP synthase

Phyre2
1

c3oaaC_
2

c2r9vA_
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c2w6fA_
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c1kmhA_
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c1w0jB_
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c2qe7C_
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c3a5dB_
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c3a5dM_
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c1fx0B_
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c2dpyA_
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c2w6jD_
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c2jizD_
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c1skyE_
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c2c61A_
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c2oblA_
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c1vdzA_
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d2jdia3
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d1skyb3
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d1fx0a3
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d2jdid3
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d1maba2
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Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c3oaaC_



100.0 100 PDB header:hydrolase/transport protein
Chain: C: PDB Molecule:atp synthase subunit alpha;
PDBTitle: structure of the e.coli f1-atp synthase inhibited by subunit epsilon
2c2r9vA_



100.0 56 PDB header:hydrolase
Chain: A: PDB Molecule:atp synthase subunit alpha;
PDBTitle: crystal structure of atp synthase subunit alpha (tm1612) from2 thermotoga maritima at 2.10 a resolution
3c2w6fA_



100.0 60 PDB header:hydrolase
Chain: A: PDB Molecule:atp synthase subunit alpha heart isoform,
PDBTitle: low resolution structures of bovine mitochondrial f1-atpase2 during controlled dehydration: hydration state 2.
4c1kmhA_



100.0 55 PDB header:hydrolase
Chain: A: PDB Molecule:atpase alpha subunit;
PDBTitle: crystal structure of spinach chloroplast f1-atpase2 complexed with tentoxin
5c1w0jB_



100.0 60 PDB header:hydrolase
Chain: B: PDB Molecule:atp synthase alpha chain heart isoform,
PDBTitle: beryllium fluoride inhibited bovine f1-atpase
6c2qe7C_



100.0 59 PDB header:hydrolase
Chain: C: PDB Molecule:atp synthase subunit alpha;
PDBTitle: crystal structure of the f1-atpase from the thermoalkaliphilic2 bacterium bacillus sp. ta2.a1
7c3a5dB_



100.0 21 PDB header:hydrolase
Chain: B: PDB Molecule:v-type atp synthase alpha chain;
PDBTitle: inter-subunit interaction and quaternary rearrangement2 defined by the central stalk of prokaryotic v1-atpase
8c3a5dM_



100.0 23 PDB header:hydrolase
Chain: M: PDB Molecule:v-type atp synthase beta chain;
PDBTitle: inter-subunit interaction and quaternary rearrangement2 defined by the central stalk of prokaryotic v1-atpase
9c1fx0B_



100.0 25 PDB header:hydrolase
Chain: B: PDB Molecule:atp synthase beta chain;
PDBTitle: crystal structure of the chloroplast f1-atpase from spinach
10c2dpyA_



100.0 22 PDB header:hydrolase
Chain: A: PDB Molecule:flagellum-specific atp synthase;
PDBTitle: crystal structure of the flagellar type iii atpase flii
11c2w6jD_



100.0 24 PDB header:hydrolase
Chain: D: PDB Molecule:atp synthase subunit beta, mitochondrial;
PDBTitle: low resolution structures of bovine mitochondrial f1-atpase2 during controlled dehydration: hydration state 5.
12c2jizD_



100.0 24 PDB header:hydrolase
Chain: D: PDB Molecule:atp synthase subunit beta;
PDBTitle: the structure of f1-atpase inhibited by resveratrol.
13c1skyE_



100.0 26 PDB header:atp synthase
Chain: E: PDB Molecule:f1-atpase;
PDBTitle: crystal structure of the nucleotide free alpha3beta3 sub-complex of2 f1-atpase from the thermophilic bacillus ps3
14c2c61A_



100.0 24 PDB header:hydrolase
Chain: A: PDB Molecule:a-type atp synthase non-catalytic subunit b;
PDBTitle: crystal structure of the non-catalytic b subunit of a-type2 atpase from m. mazei go1
15c2oblA_



100.0 27 PDB header:hydrolase
Chain: A: PDB Molecule:escn;
PDBTitle: structural and biochemical analysis of a prototypical atpase from the2 type iii secretion system of pathogenic bacteria
16c1vdzA_



100.0 21 PDB header:hydrolase
Chain: A: PDB Molecule:a-type atpase subunit a;
PDBTitle: crystal structure of a-type atpase catalytic subunit a from2 pyrococcus horikoshii ot3
17d2jdia3



100.0 72 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:RecA protein-like (ATPase-domain)
18d1skyb3



100.0 68 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:RecA protein-like (ATPase-domain)
19d1fx0a3



100.0 66 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:RecA protein-like (ATPase-domain)
20d2jdid3



100.0 29 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:RecA protein-like (ATPase-domain)
21d1skye3



not modelled 100.0 30 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:RecA protein-like (ATPase-domain)
22d1fx0b3



not modelled 100.0 28 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:RecA protein-like (ATPase-domain)
23c3l0oB_



not modelled 100.0 18 PDB header:hydrolase
Chain: B: PDB Molecule:transcription termination factor rho;
PDBTitle: structure of rna-free rho transcription termination factor from2 thermotoga maritima
24c1xpuB_



not modelled 100.0 16 PDB header:transcription/rna
Chain: B: PDB Molecule:rho transcription termination factor;
PDBTitle: structural mechanism of inhibition of the rho transcription2 termination factor by the antibiotic 5a-(3-formylphenylsulfanyl)-3 dihydrobicyclomycin (fpdb)
25d1xpua3



not modelled 100.0 19 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:RecA protein-like (ATPase-domain)
26d1fx0a1



not modelled 99.9 38 Fold:Left-handed superhelix
Superfamily:C-terminal domain of alpha and beta subunits of F1 ATP synthase
Family:C-terminal domain of alpha and beta subunits of F1 ATP synthase
27d2jdia1



not modelled 99.9 47 Fold:Left-handed superhelix
Superfamily:C-terminal domain of alpha and beta subunits of F1 ATP synthase
Family:C-terminal domain of alpha and beta subunits of F1 ATP synthase
28d1skyb1



not modelled 99.9 35 Fold:Left-handed superhelix
Superfamily:C-terminal domain of alpha and beta subunits of F1 ATP synthase
Family:C-terminal domain of alpha and beta subunits of F1 ATP synthase
29d2f43a1



not modelled 99.9 47 Fold:Left-handed superhelix
Superfamily:C-terminal domain of alpha and beta subunits of F1 ATP synthase
Family:C-terminal domain of alpha and beta subunits of F1 ATP synthase
30d1skyb2



not modelled 99.5 40 Fold:Domain of alpha and beta subunits of F1 ATP synthase-like
Superfamily:N-terminal domain of alpha and beta subunits of F1 ATP synthase
Family:N-terminal domain of alpha and beta subunits of F1 ATP synthase
31d1maba2



99.5 35 Fold:Domain of alpha and beta subunits of F1 ATP synthase-like
Superfamily:N-terminal domain of alpha and beta subunits of F1 ATP synthase
Family:N-terminal domain of alpha and beta subunits of F1 ATP synthase
32d2jdia2



not modelled 99.5 38 Fold:Domain of alpha and beta subunits of F1 ATP synthase-like
Superfamily:N-terminal domain of alpha and beta subunits of F1 ATP synthase
Family:N-terminal domain of alpha and beta subunits of F1 ATP synthase
33d1fx0a2



not modelled 99.4 46 Fold:Domain of alpha and beta subunits of F1 ATP synthase-like
Superfamily:N-terminal domain of alpha and beta subunits of F1 ATP synthase
Family:N-terminal domain of alpha and beta subunits of F1 ATP synthase
34d1skye1



not modelled 98.7 13 Fold:Left-handed superhelix
Superfamily:C-terminal domain of alpha and beta subunits of F1 ATP synthase
Family:C-terminal domain of alpha and beta subunits of F1 ATP synthase
35c1u9iA_



not modelled 98.7 14 PDB header:circadian clock protein
Chain: A: PDB Molecule:kaic;
PDBTitle: crystal structure of circadian clock protein kaic with phosphorylation2 sites
36d1fx0b1



not modelled 98.7 14 Fold:Left-handed superhelix
Superfamily:C-terminal domain of alpha and beta subunits of F1 ATP synthase
Family:C-terminal domain of alpha and beta subunits of F1 ATP synthase
37d2jdid1



not modelled 98.6 15 Fold:Left-handed superhelix
Superfamily:C-terminal domain of alpha and beta subunits of F1 ATP synthase
Family:C-terminal domain of alpha and beta subunits of F1 ATP synthase
38d1tf7a2



not modelled 98.3 21 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:RecA protein-like (ATPase-domain)
39c2recB_



not modelled 98.3 18 PDB header:helicase
PDB COMPND:
40d1tf7a1



not modelled 98.3 14 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:RecA protein-like (ATPase-domain)
41d1xp8a1



not modelled 98.2 20 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:RecA protein-like (ATPase-domain)
42c2zroA_



not modelled 98.2 18 PDB header:hydrolase
Chain: A: PDB Molecule:protein reca;
PDBTitle: msreca adp form iv
43c3hr8A_



not modelled 98.2 19 PDB header:recombination
Chain: A: PDB Molecule:protein reca;
PDBTitle: crystal structure of thermotoga maritima reca
44d1mo6a1



not modelled 98.1 18 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:RecA protein-like (ATPase-domain)
45c1xp8A_



not modelled 98.1 21 PDB header:dna binding protein
Chain: A: PDB Molecule:reca protein;
PDBTitle: "deinococcus radiodurans reca in complex with atp-gamma-s"
46d1ubea1



not modelled 98.1 17 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:RecA protein-like (ATPase-domain)
47c3ldaA_



not modelled 98.0 19 PDB header:dna binding protein
Chain: A: PDB Molecule:dna repair protein rad51;
PDBTitle: yeast rad51 h352y filament interface mutant
48c2dr3A_



not modelled 98.0 19 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:upf0273 protein ph0284;
PDBTitle: crystal structure of reca superfamily atpase ph0284 from pyrococcus2 horikoshii ot3
49d2i1qa2



not modelled 98.0 16 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:RecA protein-like (ATPase-domain)
50c2w0mA_



not modelled 98.0 21 PDB header:unknown function
Chain: A: PDB Molecule:sso2452;
PDBTitle: crystal structure of sso2452 from sulfolobus solfataricus2 p2
51d1n0wa_



not modelled 97.9 17 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:RecA protein-like (ATPase-domain)
52d1u94a1



not modelled 97.8 16 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:RecA protein-like (ATPase-domain)
53c2ztsB_



not modelled 97.8 15 PDB header:atp-binding protein
Chain: B: PDB Molecule:putative uncharacterized protein ph0186;
PDBTitle: crystal structure of kaic-like protein ph0186 from2 hyperthermophilic archaea pyrococcus horikoshii ot3
54c2dflA_



not modelled 97.8 18 PDB header:recombination
Chain: A: PDB Molecule:dna repair and recombination protein rada;
PDBTitle: crystal structure of left-handed rada filament
55c1t4gA_



not modelled 97.8 18 PDB header:recombination
Chain: A: PDB Molecule:dna repair and recombination protein rada;
PDBTitle: atpase in complex with amp-pnp
56d1v5wa_



not modelled 97.8 20 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:RecA protein-like (ATPase-domain)
57d1pzna2



not modelled 97.7 20 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:RecA protein-like (ATPase-domain)
58c3io5B_



not modelled 97.7 14 PDB header:dna binding protein
Chain: B: PDB Molecule:recombination and repair protein;
PDBTitle: crystal structure of a dimeric form of the uvsx recombinase core2 domain from enterobacteria phage t4
59d1szpa2



not modelled 97.7 19 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:RecA protein-like (ATPase-domain)
60c1szpC_



not modelled 97.6 18 PDB header:dna binding protein
Chain: C: PDB Molecule:dna repair protein rad51;
PDBTitle: a crystal structure of the rad51 filament
61c2zjbB_



not modelled 97.6 13 PDB header:recombination
Chain: B: PDB Molecule:meiotic recombination protein dmc1/lim15 homolog;
PDBTitle: crystal structure of the human dmc1-m200v polymorphic2 variant
62c1pznG_



not modelled 97.5 18 PDB header:recombination
Chain: G: PDB Molecule:dna repair and recombination protein rad51;
PDBTitle: rad51 (rada)
63c2cvhB_



not modelled 97.4 17 PDB header:dna binding protein
Chain: B: PDB Molecule:dna repair and recombination protein radb;
PDBTitle: crystal structure of the radb recombinase
64c3bh0A_



not modelled 97.3 15 PDB header:replication
Chain: A: PDB Molecule:dnab-like replicative helicase;
PDBTitle: atpase domain of g40p
65c3cmvG_



not modelled 97.2 18 PDB header:recombination
Chain: G: PDB Molecule:protein reca;
PDBTitle: mechanism of homologous recombination from the reca-2 ssdna/dsdna structures
66c2vyeA_



not modelled 97.1 18 PDB header:hydrolase
Chain: A: PDB Molecule:replicative dna helicase;
PDBTitle: crystal structure of the dnac-ssdna complex
67c3bs4A_



not modelled 96.8 9 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein ph0321;
PDBTitle: crystal structure of uncharacterized protein ph0321 from pyrococcus2 horikoshii in complex with an unknown peptide
68c1zu4A_



not modelled 96.6 14 PDB header:protein transport
Chain: A: PDB Molecule:ftsy;
PDBTitle: crystal structure of ftsy from mycoplasma mycoides- space2 group p21212
69d2jdid2



not modelled 96.6 22 Fold:Domain of alpha and beta subunits of F1 ATP synthase-like
Superfamily:N-terminal domain of alpha and beta subunits of F1 ATP synthase
Family:N-terminal domain of alpha and beta subunits of F1 ATP synthase
70c2q6tB_



not modelled 96.6 27 PDB header:hydrolase
Chain: B: PDB Molecule:dnab replication fork helicase;
PDBTitle: crystal structure of the thermus aquaticus dnab monomer
71d1cr2a_



not modelled 96.5 12 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:RecA protein-like (ATPase-domain)
72d1skye2



not modelled 96.5 25 Fold:Domain of alpha and beta subunits of F1 ATP synthase-like
Superfamily:N-terminal domain of alpha and beta subunits of F1 ATP synthase
Family:N-terminal domain of alpha and beta subunits of F1 ATP synthase
73d1fx0b2



not modelled 96.4 26 Fold:Domain of alpha and beta subunits of F1 ATP synthase-like
Superfamily:N-terminal domain of alpha and beta subunits of F1 ATP synthase
Family:N-terminal domain of alpha and beta subunits of F1 ATP synthase
74c3bgwD_



not modelled 96.4 23 PDB header:replication
Chain: D: PDB Molecule:dnab-like replicative helicase;
PDBTitle: the structure of a dnab-like replicative helicase and its interactions2 with primase
75c2og2A_



not modelled 96.4 18 PDB header:protein transport
Chain: A: PDB Molecule:putative signal recognition particle receptor;
PDBTitle: crystal structure of chloroplast ftsy from arabidopsis2 thaliana
76c3b9qA_



not modelled 96.4 18 PDB header:protein transport
Chain: A: PDB Molecule:chloroplast srp receptor homolog, alpha subunit
PDBTitle: the crystal structure of cpftsy from arabidopsis thaliana
77c2j7pA_



not modelled 96.4 16 PDB header:signal recognition
Chain: A: PDB Molecule:signal recognition particle protein;
PDBTitle: gmppnp-stabilized ng domain complex of the srp gtpases ffh2 and ftsy
78c3dmdA_



not modelled 96.4 13 PDB header:transport protein
Chain: A: PDB Molecule:signal recognition particle receptor;
PDBTitle: structures and conformations in solution of the signal recognition2 particle receptor from the archaeon pyrococcus furiosus
79d1mabb2



not modelled 96.3 22 Fold:Domain of alpha and beta subunits of F1 ATP synthase-like
Superfamily:N-terminal domain of alpha and beta subunits of F1 ATP synthase
Family:N-terminal domain of alpha and beta subunits of F1 ATP synthase
80c2cnwF_



not modelled 96.2 20 PDB header:signal recognition
Chain: F: PDB Molecule:cell division protein ftsy;
PDBTitle: gdpalf4 complex of the srp gtpases ffh and ftsy
81c2a5yB_



not modelled 96.1 12 PDB header:apoptosis
Chain: B: PDB Molecule:ced-4;
PDBTitle: structure of a ced-4/ced-9 complex
82c1vmaA_



not modelled 96.0 21 PDB header:protein transport
Chain: A: PDB Molecule:cell division protein ftsy;
PDBTitle: crystal structure of cell division protein ftsy (tm0570) from2 thermotoga maritima at 1.60 a resolution
83c2qy9A_



not modelled 95.8 19 PDB header:protein transport
Chain: A: PDB Molecule:cell division protein ftsy;
PDBTitle: structure of the ng+1 construct of the e. coli srp receptor2 ftsy
84c3bosA_



not modelled 95.8 14 PDB header:hydrolase regulator,dna binding protein
Chain: A: PDB Molecule:putative dna replication factor;
PDBTitle: crystal structure of a putative dna replication regulator hda2 (sama_1916) from shewanella amazonensis sb2b at 1.75 a resolution
85c3dm5A_



not modelled 95.8 17 PDB header:rna binding protein, transport protein
Chain: A: PDB Molecule:signal recognition 54 kda protein;
PDBTitle: structures of srp54 and srp19, the two proteins assembling2 the ribonucleic core of the signal recognition particle3 from the archaeon pyrococcus furiosus.
86d1nlfa_



not modelled 95.6 17 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:RecA protein-like (ATPase-domain)
87c2iy3A_



not modelled 95.6 16 PDB header:rna-binding
Chain: A: PDB Molecule:signal recognition particle protein ffh;
PDBTitle: structure of the e. coli signal recognition particle2 bound to a translating ribosome
88c3b85A_



not modelled 95.6 22 PDB header:hydrolase
Chain: A: PDB Molecule:phosphate starvation-inducible protein;
PDBTitle: crystal structure of predicted phosphate starvation-induced atpase2 phoh2 from corynebacterium glutamicum
89c2kjqA_



not modelled 95.5 15 PDB header:replication
Chain: A: PDB Molecule:dnaa-related protein;
PDBTitle: solution structure of protein nmb1076 from neisseria meningitidis.2 northeast structural genomics consortium target mr101b.
90c2j37W_



not modelled 95.4 13 PDB header:ribosome
Chain: W: PDB Molecule:signal recognition particle 54 kda protein
PDBTitle: model of mammalian srp bound to 80s rncs
91d1vmaa2



not modelled 95.4 16 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nitrogenase iron protein-like
92c2yhsA_



not modelled 95.3 15 PDB header:cell cycle
Chain: A: PDB Molecule:cell division protein ftsy;
PDBTitle: structure of the e. coli srp receptor ftsy
93d1qzxa3



not modelled 95.2 19 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nitrogenase iron protein-like
94c1fnnB_



not modelled 95.2 14 PDB header:cell cycle
Chain: B: PDB Molecule:cell division control protein 6;
PDBTitle: crystal structure of cdc6p from pyrobaculum aerophilum
95c3pvsA_



not modelled 95.1 17 PDB header:recombination
Chain: A: PDB Molecule:replication-associated recombination protein a;
PDBTitle: structure and biochemical activities of escherichia coli mgsa
96d1okkd2



not modelled 95.1 17 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nitrogenase iron protein-like
97c2qbyA_



not modelled 94.9 18 PDB header:replication/dna
Chain: A: PDB Molecule:cell division control protein 6 homolog 1;
PDBTitle: crystal structure of a heterodimer of cdc6/orc1 initiators2 bound to origin dna (from s. solfataricus)
98c2zamA_



not modelled 94.9 19 PDB header:protein transport
Chain: A: PDB Molecule:vacuolar protein sorting-associating protein 4b;
PDBTitle: crystal structure of mouse skd1/vps4b apo-form
99c3j04A_



not modelled 94.7 22 PDB header:structural protein
Chain: A: PDB Molecule:myosin-11;
PDBTitle: em structure of the heavy meromyosin subfragment of chick smooth2 muscle myosin with regulatory light chain in phosphorylated state
100c2wjyA_



not modelled 94.6 20 PDB header:hydrolase
Chain: A: PDB Molecule:regulator of nonsense transcripts 1;
PDBTitle: crystal structure of the complex between human nonsense2 mediated decay factors upf1 and upf2 orthorhombic form
101d1fnna2



not modelled 94.5 15 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Extended AAA-ATPase domain
102c1z6tC_



not modelled 94.3 14 PDB header:apoptosis
Chain: C: PDB Molecule:apoptotic protease activating factor 1;
PDBTitle: structure of the apoptotic protease-activating factor 12 bound to adp
103c3d8bB_



not modelled 94.2 11 PDB header:hydrolase
Chain: B: PDB Molecule:fidgetin-like protein 1;
PDBTitle: crystal structure of human fidgetin-like protein 1 in complex with adp
104c3pfiB_



not modelled 94.1 26 PDB header:hydrolase
Chain: B: PDB Molecule:holliday junction atp-dependent dna helicase ruvb;
PDBTitle: 2.7 angstrom resolution crystal structure of a probable holliday2 junction dna helicase (ruvb) from campylobacter jejuni subsp. jejuni3 nctc 11168 in complex with adenosine-5'-diphosphate
105d1qvra2



not modelled 94.0 14 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Extended AAA-ATPase domain
106d1ls1a2



not modelled 94.0 19 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nitrogenase iron protein-like
107d1ye8a1



not modelled 93.9 18 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:RecA protein-like (ATPase-domain)
108c2c9oC_



not modelled 93.9 34 PDB header:hydrolase
Chain: C: PDB Molecule:ruvb-like 1;
PDBTitle: 3d structure of the human ruvb-like helicase ruvbl1
109c3lxwA_



not modelled 93.9 20 PDB header:immune system
Chain: A: PDB Molecule:gtpase imap family member 1;
PDBTitle: crystal structure of human gtpase imap family member 1
110c3dtpA_



not modelled 93.8 20 PDB header:contractile protein
Chain: A: PDB Molecule:myosin 2 heavy chain chimera of smooth and
PDBTitle: tarantula heavy meromyosin obtained by flexible docking to2 tarantula muscle thick filament cryo-em 3d-map
111d1nn5a_



not modelled 93.7 10 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nucleotide and nucleoside kinases
112c1xwiA_



not modelled 93.7 16 PDB header:protein transport
Chain: A: PDB Molecule:skd1 protein;
PDBTitle: crystal structure of vps4b
113d1tmka_



not modelled 93.7 22 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nucleotide and nucleoside kinases
114c1q57G_



not modelled 93.7 7 PDB header:transferase
Chain: G: PDB Molecule:dna primase/helicase;
PDBTitle: the crystal structure of the bifunctional primase-helicase of2 bacteriophage t7
115c1nsfA_



not modelled 93.7 20 PDB header:protein transport
Chain: A: PDB Molecule:n-ethylmaleimide sensitive factor;
PDBTitle: d2 hexamerization domain of n-ethylmaleimide sensitive factor (nsf)
116c3iytG_



not modelled 93.6 21 PDB header:apoptosis
Chain: G: PDB Molecule:apoptotic protease-activating factor 1;
PDBTitle: structure of an apoptosome-procaspase-9 card complex
117c3e1sA_



not modelled 93.6 17 PDB header:hydrolase
Chain: A: PDB Molecule:exodeoxyribonuclease v, subunit recd;
PDBTitle: structure of an n-terminal truncation of deinococcus radiodurans recd2
118c2xzlA_



not modelled 93.5 22 PDB header:hydrolase/rna
Chain: A: PDB Molecule:atp-dependent helicase nam7;
PDBTitle: upf1-rna complex
119c2ce7B_



not modelled 93.5 16 PDB header:cell division protein
Chain: B: PDB Molecule:cell division protein ftsh;
PDBTitle: edta treated
120d1l8qa2



not modelled 93.5 28 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Extended AAA-ATPase domain

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite



Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0