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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c2j37W_

Fold library idPDB HeaderMoleculeTitle
c2j37W_PDB header: ribosomeChain: W: PDB Molecule: signal recognition particle 54 kda proteinPDBTitle: model of mammalian srp bound to 80s rncs


Added to library: Tue Mar 16 14:27:44 2010
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence RKITSALRSLSNATIINEEVLNAMLKEVCTALLEADVNIKLVKQLRENVKSAIDLEEMASGLNKRKMIQH
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Known secondary structure (DSSP)
TTTTTTT


S
SS



TTTSSSTTTT



SSS
 .........80.........90.........100.........110.........120.........130.........140
Sequence AVFKELVKLVDPGVKAWTPTKGNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLK
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SS
STTSSTT



SSS
 .........150.........160.........170.........180.........190.........200.........210
Sequence QNATKARIPFYGSYTEMDPVIIASEGVEKFKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVY
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Known secondary structure (DSSP) T





S
TT





TT


S
 .........220.........230.........240.........250.........260.........270.........280
Sequence VMDASIGQACEAQAKAFKDKVDVASVIVTKLDGHAKGGGALSAVAATKSPIIFIGTGEHIDDFEPFKTQP
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Known secondary structure (DSSP) TT

TT




TTS



T



SSSTT


T
 .........290.........300.........310.........320.........330.........340.........350
Sequence FISKLLGMGDIEGLIDKVNELKLDDNEALIEKLKHGQFTLRDMYEQFQNIMKMGPFSQILGMIPGFGTDF
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Known secondary structure (DSSP)


TTTTTTTTTTTTT


TTTTTS
TTSGGGG










SS



S

S
GG
 .........360.........370.........380.........390.........400.........410.........420
Sequence MSKGNEQESMARLKKLMTIMDSMNDQELDSTDGAKVFSKQPGRIQRVARGSGVSTRDVQELLTQYTKFAQ
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Known secondary structure (DSSP) G
S




TTS

TT
TTT


 .........430.........440.........450.........460.........470.........
Sequence MVKKMGGIKGLFKGGDMSKNVSQSQMAKLNQQMAKMMDPRVLHHMGGMAGLQSMMRQFQ
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Known secondary structure (DSSP)




S
TTT



SS





STTSSSS


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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