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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c1xwiA_

Fold library idPDB HeaderMoleculeTitle
c1xwiA_PDB header: protein transportChain: A: PDB Molecule: skd1 protein;PDBTitle: crystal structure of vps4b


Added to library: Tue Mar 16 12:45:37 2010
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence AIVIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEAN
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Known secondary structure (DSSP)






GGGS
S

GGGS
TT



SSSSSS
TT
 .........80.........90.........100.........110.........120.........130.........140
Sequence NSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQM
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Known secondary structure (DSSP) S


SS

SS

S
TSSTTTGGG

SSS

TT
 .........150.........160.........170.........180.........190.........200.........210
Sequence QGVGVDNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRK
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Known secondary structure (DSSP)
SSS

TTS
TTTS
T






TT

B


T
 .........220.........230.........240.........250.........260.........270.........280
Sequence TDGYSGADISIIVRDALMQPVRKVQSATHFKKVRGPSRADPNHLVDDLLTPCSPGDPGAIEMTWMDVPGD
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Known secondary structure (DSSP)
TT

T
S
SS
TTS

SSSTT

GGGS
GG
 .........290.........300.........310.........320..
Sequence KLLEPVVSMSDMLRSLSNTKPTVNEHDLLKLKKFTEDFGQEG
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Known secondary structure (DSSP) GB



B
T


S

TT
S


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Michael Sternberg 
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