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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c3a5dM_

Fold library idPDB HeaderMoleculeTitle
c3a5dM_PDB header: hydrolaseChain: M: PDB Molecule: v-type atp synthase beta chain;PDBTitle: inter-subunit interaction and quaternary rearrangement2 defined by the central stalk of prokaryotic v1-atpase


Added to library: Sun Aug 29 01:53:33 2010
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence EYTGITYISGPLLFVENAKDLAYGAIVDIKDGTGRVRGGQVIEVSEEYAVIQVFEETTGLDLATTSVSLV
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Known secondary structure (DSSP)
TTSS



TT
SS
SS

TTSS

TT

TT

 .........80.........90.........100.........110.........120.........130.........140
Sequence EDVARLGVSKEMLGRRFNGIGKPIDGLPPITPEKRLPITGLPLNPVARRKPEQFIQTGISTIDVMNTLVR
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Known secondary structure (DSSP) SS



GGGTTTTS
BSSS





S
SSS
SS

B
S



SB
B
S
TTS

BT
 .........150.........160.........170.........180.........190.........200.........210
Sequence GQKLPIFSGSGLPANEIAAQIARQATVRPKEEPFAVVFAAMGITQRELSYFIQEFERTGALSRSVLFLNK
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Known secondary structure (DSSP) T
B

TTS

B




S

SGGGG
 .........220.........230.........240.........250.........260.........270.........280
Sequence ADDPTIERILTPRMALTVAEYLAFEHDYHVLVILTDMTNYCEALREIGAAREEIPGRRGYPGYMYTDLAT
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Known secondary structure (DSSP) TTS
S

TTT



GGG

TT
 .........290.........300.........310.........320.........330.........340.........350
Sequence IYERAGVVEGKKGSVTQIPILSMPDDDRTHPIPDLTGYITEGQIQLSRELHRKGIYPPIDPLPSLSRLMN
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Known secondary structure (DSSP) TS
BTTSS
GGG
TTSGGG
SB
TT
SS
B
TTT
SSGG
 .........360.........370.........380.........390.........400.........410.........420
Sequence NGVGKGKTREDHKQVSDQLYSAYANGVDIRKLVAIIGEDALTENDRRYLQFADAFERFFINQGQQNRSIE
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Known secondary structure (DSSP) GG
STTTS
TT
GGGS
TT

SS



 .........430.........440.........450
Sequence ESLQIAWALLSMLPQGELKRISKDHIGKYY
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Known secondary structure (DSSP) TTS
GGG
TTS


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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