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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c1vdzA_

Fold library idPDB HeaderMoleculeTitle
c1vdzA_PDB header: hydrolaseChain: A: PDB Molecule: a-type atpase subunit a;PDBTitle: crystal structure of a-type atpase catalytic subunit a from2 pyrococcus horikoshii ot3


Added to library: Tue Mar 16 13:33:56 2010
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence RPGEPVVGTGASLSVELGPGLLTSIYDGIQRPLEVIREKTGDFIARGVTAPALPRDKKWHFIPKAKVGDK
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Known secondary structure (DSSP)






SS



STT
TT
TTS

SS



B

SS

B




SS
SS




TT
 .........80.........90.........100.........110.........120.........130.........140
Sequence VVGGDIIGEVPETSIIVHKIMVPPGIEGEIVEIAEEGDYTIEEVIAKVKTPSGEIKELKMYQRWPVRVKR
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Known secondary structure (DSSP)
TT

SSS


TT



S
TTS


TTS

S
TTS

 .........150.........160.........170.........180.........190.........200.........210
Sequence PYKEKLPPEVPLITGQRVIDTFFPQAKGGTAAIPGPFGSGKTVTQHQLAKWSDAQVVIYIGCGERGNEMT
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Known secondary structure (DSSP)

S
S
SB


S
S

BTT
S
TT
TT

SS
S

S

TTTT
 .........220.........230.........240.........250.........260.........270.........280
Sequence DVLEEFPKLKDPKTGKPLMERTVLIANTSNMPVAAREASIYTGITIAEYFRDMGYDVALMADSTSRWAEA
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Known secondary structure (DSSP) SSGGG
B
TTTSSBGGGG

TTS
TT



SS



 .........290.........300.........310.........320.........330.........340.........350
Sequence LPAYLASKLAEFYERAGRVVTLGSDYRVGSVSVIGAVSPPGGDFSEPVVQNTLRVVKVFWALDADLARRR
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Known secondary structure (DSSP)


TT

SSSS



SSS


TT
S

B
TT
 .........360.........370.........380.........390.........400.........410.........420
Sequence HFPAINWLTSYSLYVDAVKDWWHKNIDPEWKAMRDKAMALLQKESELQEIVRIVGPDALPERERAILLVA
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Known secondary structure (DSSP)
SS
B
TTT
TTT
TT
STT

 .........430.........440.........450.........460.........470.........480.........490
Sequence RMLREDYLQQDAFDEVDTYCPPEKQVTMMRVLLNFYDKTMEAINRGVPLEEIAKLPVREEIGRMKFERDV
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Known secondary structure (DSSP) TT


TTSTTTTS

TTT

T
TTTGGG


 .........500.........510...
Sequence SKIRSLIDKTNEQFEELFKKYGA
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Known secondary structure (DSSP) TS



Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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