PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c3pfiB_

Fold library id	PDB Header	Molecule	Title
c3pfiB_	PDB header: hydrolase	Chain: B: PDB Molecule: holliday junction atp-dependent dna helicase ruvb;	PDBTitle: 2.7 angstrom resolution crystal structure of a probable holliday2 junction dna helicase (ruvb) from campylobacter jejuni subsp. jejuni3 nctc 11168 in complex with adenosine-5'-diphosphate

Links to external resources
Added to library: Sat Nov 20 09:20:01 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence S N F D G Y I G Q E S I K K N L N V F I A A A K K R N E C L D H I L F S G P A G L G K T T L A N I I S Y E X S A N I K T T A A P X I E K S G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S T T
S
T T
S S T T S S T T
G G G
S S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence D L A A I L T N L S E G D I L F I D E I H R L S P A I E E V L Y P A X E D Y P K F T L I G A T T R A G X L S N P L R D R F G X Q F R L E F Y

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
T T
S G G G
T
S
G G G S
T T
S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence K D S E L A L I L Q K A A L K L N K T C E E K A A L E I A K R S R S T P R I A L R L L K R V R D F A D V N D E E I I T E K R A N E A L N S L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
T T T
T T
S

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . . . . . . . . 260 . . . . . . . . . 270 . . . . . . . . . 280

Sequence G V N E L G F D A X D L R Y L E L L T A A K Q K P I G L A S I A A A L S E D E N T I E D V I E P Y L L A N G Y I E R T A K G R I A S A K S Y

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
T T
T T T
B
T T
T T T T S T T

. . .

Sequence S A L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

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Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

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Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	S	N	F	D	G	Y	I	G	Q	E	S	I	K	K	N	L	N	V	F	I	A	A	A	K	K	R	N	E	C	L	D	H	I	L	F	S	G	P	A	G	L	G	K	T	T	L	A	N	I	I	S	Y	E	X	S	A	N	I	K	T	T	A	A	P	X	I	E	K	S	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			S	T	T			S																		T	T										S	S	T	T	S	S												T	T								G	G	G			S	S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	D	L	A	A	I	L	T	N	L	S	E	G	D	I	L	F	I	D	E	I	H	R	L	S	P	A	I	E	E	V	L	Y	P	A	X	E	D	Y	P	K	F	T	L	I	G	A	T	T	R	A	G	X	L	S	N	P	L	R	D	R	F	G	X	Q	F	R	L	E	F	Y
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)								T			T	T							S	G	G	G															T											S		G	G	G	S						T	T		S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	K	D	S	E	L	A	L	I	L	Q	K	A	A	L	K	L	N	K	T	C	E	E	K	A	A	L	E	I	A	K	R	S	R	S	T	P	R	I	A	L	R	L	L	K	R	V	R	D	F	A	D	V	N	D	E	E	I	I	T	E	K	R	A	N	E	A	L	N	S	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																T	T															T	T	T																			T	T		S
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Sequence	G	V	N	E	L	G	F	D	A	X	D	L	R	Y	L	E	L	L	T	A	A	K	Q	K	P	I	G	L	A	S	I	A	A	A	L	S	E	D	E	N	T	I	E	D	V	I	E	P	Y	L	L	A	N	G	Y	I	E	R	T	A	K	G	R	I	A	S	A	K	S	Y
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T			T	T																T	T	T			B									T	T									T	T							T	T	S					T	T
	.	.	.
Sequence	S	A	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)