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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c3iytG_

Fold library idPDB HeaderMoleculeTitle
c3iytG_PDB header: apoptosisChain: G: PDB Molecule: apoptotic protease-activating factor 1;PDBTitle: structure of an apoptosome-procaspase-9 card complex


Added to library: Sun Aug 29 06:48:35 2010
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence GITSYVRTVLCEGGVPQRPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLL
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Known secondary structure (DSSP)



SS



SS



TTSTTS


TTSS

 .........80.........90.........100.........110.........120.........130.........140
Sequence EGCFPGGVHWVSVGKQDKSGLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDD
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Known secondary structure (DSSP)
TT
S


SS

S
SS


ST
TT
 .........150.........160.........170.........180.........190.........200.........210
Sequence VWDSWVLKAFDSQCQILLTTRDKSVTDSVMGPKYVVPVESSLGKEKGLEILSLFVNMKKADLPEQAHSII
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Known secondary structure (DSSP)

TT
SS
S
GGGGTT

S







T

STT

T
 .........220.........230.........240.........250.........260.........270.........280
Sequence KECKGSPLVVSLIGALLRDFPNRWEYYLKQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYT
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Known secondary structure (DSSP) TT
STT
S


S

S

S

TTS
TTT
 .........290.........300.........310.........320.........330.........340.........350
Sequence DLSILQKDVKVPTKVLCILWDMETEEVEDILQEFVNKSLLFCDRNGKSFRYYLHDLQVDFLTEKNCSQLQ
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Known secondary structure (DSSP) GGG

TT

T

TTSSTT



 .........360.........370.........380.........390.........400.........410.........420
Sequence DLHKKIITQFQRYHQPHTLSPDQEDCMYWYNFLAYHMASAKMHKELCALMFSLDWIKAKTELVGPAHLIH
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Known secondary structure (DSSP)

TTT

TTSTTT
S

S
 .........430.........440.........450.........460.........470.........480.........490
Sequence EFVEYRHILDEKDCAVSENFQEFLSLNGHLLGRQPFPNIVQLGLCEPETSEVYQQAKLQAKQEVDNGMLY
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Known secondary structure (DSSP) GGGS
SSSSTTSSS


TS
TTSS

S

B
 .........500.........510.........520.........530.........540.........550.........560
Sequence LEWINKKAVYHACFSEDGQRIASCGADKTLQVFKAETGEKLLEIKAHEDEVLCCAFSTDDRFIATCSVDK
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Known secondary structure (DSSP)








SSSS
TTS
TTT



SS




SSSS

TT
 .........570.........580.........590.........600.........610.........620.........630
Sequence KVKIWNSMTGELVHTYDEHSEQVNCCHFTNSSHHLLLATGSSDCFLKLWDLNQKECRNTMFGHTNSVNHC
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Known secondary structure (DSSP)


TTSS





SS

SSSSSS
TTS

TTT




SS
 .........640.........650.........660.........670.........680.........690.........700
Sequence RFSPDDKLLASCSADGTLKLWDATSANERKSINVKQFFLNLEDPQERIMVAAKNKIFLFDIHTSGLLGEI
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Known secondary structure (DSSP)
SSS
TTS
SSS




SS



SS

SSSTT



 .........710.........720.........730.........740.........750.........760.........770
Sequence HTGHHSTIQYCDFSPQNHLAVVALSQYCVELWNTDSRSKVADCRGHLSWVHGVMFSPDGSSFLTSSDDQT
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Known secondary structure (DSSP)


SS

SSSSTTTTGGG


SS

SSSS
TT

 .........780.........790.........800.........810.........820.........830.........840
Sequence IRLWETKKVCKNSAVMVFQENEVMVLAVDHIRRLQLINGRTGQIDYLTEAQVSCCCLSPHLQYIAFGDEN
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Known secondary structure (DSSP) B
B
SS
SS



B



SSSS
TTT
SSS



SSS
SS
S
 .........850.........860.........870.........880.........890.........900.........910
Sequence GAIEILELVNNRIFQSRFQHKKTVWHIQFTADEKTLISSSDDAEIQVWNWQLDKCIFLRGHQETVKDFRL
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Known secondary structure (DSSP) SS

STT




SS

SSSSSS

TTT
S
S











 .........920.........930.........940.........950.........960.........970.........980
Sequence LKNSRLLSWSFDGTVKVWNIITGNKEKDFVCHQGTVLSCDISHDATKFSSTSADKTAKIWSFDLLLPLHE
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Known secondary structure (DSSP) S
SSSS
GGGSS
SS
S

SS
TTTTTTS

SSSS

S
 .........990.........1000.........1010.........1020.........1030.........1040.........1050
Sequence LRGHNGCVRCSAFSVDSTLLATGDDNGEIRIWNVSNGELLHLCAPLSEEGAATHGGWVTDLCFSPDGKML
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Known secondary structure (DSSP)


SS
TTTTTT
BTTTT

B
TT
SSSSSS






TTSS
 .........1060.........1070.........1080.........1090.........1100.......
Sequence ISAGGYIKWWNVVTGESSQTFYTNGTNLKKIHVSPDFKTYVTVDNLGILYILQTLEH
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Known secondary structure (DSSP)
SSSTTTT

S




SS
SSSS
B



Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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