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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c2zamA_

Fold library idPDB HeaderMoleculeTitle
c2zamA_PDB header: protein transportChain: A: PDB Molecule: vacuolar protein sorting-associating protein 4b;PDBTitle: crystal structure of mouse skd1/vps4b apo-form


Added to library: Tue Mar 16 12:24:39 2010
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence AIVIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEAN
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Known secondary structure (DSSP)

B






GGGS
S
T
GGGS
SS



S
STTS
TT
 .........80.........90.........100.........110.........120.........130.........140
Sequence NSTFFSISSSDLVSSEKLVKNLFQLARENKPSIIFIDEIDSSEAARRIKTEFLVQMQGVGVDNDGILVLG
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Known secondary structure (DSSP) T


STTT


TT
SS






TSSS

TT
 .........150.........160.........170.........180.........190.........200.........210
Sequence ATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQNSLTEADFQELGRKTDGYSGADISIIVR
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Known secondary structure (DSSP) S

TTS

S




STT

B


S

S

 .........220.........230.........240.........250.........260.........270.........280
Sequence DALMQPVRKVQSATHFKKVRGPSRADPNCIVNDLLTPCSPGDPGAIEMTWMDVPGDKLLEPVVSMWDMLR
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Known secondary structure (DSSP) S
STT
SSSTT


TTTS
TTTB



B
 .........290.........300........
Sequence SLSSTKPTVNEQDLLKLKKFTEDFGQEG
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Known secondary structure (DSSP) TT


S


TTT


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Michael Sternberg 
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