PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: d1ubea1

Fold library id	Fold	Superfamily	Family
d1ubea1	P-loop containing nucleoside triphosphate hydrolases	P-loop containing nucleoside triphosphate hydrolases	RecA protein-like (ATPase-domain)

Links to external resources
Added to library: Tue Mar 16 13:28:37 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence A P D R E K A L E L A M A Q I D K N F G K G S V M R L G E E V R Q P I S V I P T G S I S L D V A L G I G G L P R G R V I E I Y G P E S S G K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S T T S
T T
S
B
S
T S S S B
T T S
S T T S S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence T T V A L H A V A N A Q A A G G I A A F I D A E H A L D P E Y A K K L G V D T D S L L V S Q P D T G E Q A L E I A D M L V R S G A L D I I V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T S
S S
T
G G G
S S T T S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence I D S V A A L V P R A E I E G L Q A R L M S Q A L R K M T G A L N N S G T T A I F I N Q T G G K A L K F Y A S V R L D V R R I E T L K D G T

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S
S T T
T T
S
S S

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . .

Sequence D A V G N R T R V K V V K N K V S P P F K Q A E F D I L Y G Q G I

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S
S S S S
T T T B

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	A	P	D	R	E	K	A	L	E	L	A	M	A	Q	I	D	K	N	F	G	K	G	S	V	M	R	L	G	E	E	V	R	Q	P	I	S	V	I	P	T	G	S	I	S	L	D	V	A	L	G	I	G	G	L	P	R	G	R	V	I	E	I	Y	G	P	E	S	S	G	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																					S	T	T	S			T	T							S			B			S									T	S	S	S	B		T	T	S							S	T	T	S	S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	T	T	V	A	L	H	A	V	A	N	A	Q	A	A	G	G	I	A	A	F	I	D	A	E	H	A	L	D	P	E	Y	A	K	K	L	G	V	D	T	D	S	L	L	V	S	Q	P	D	T	G	E	Q	A	L	E	I	A	D	M	L	V	R	S	G	A	L	D	I	I	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)														T	S								S	S												T			G	G	G							S	S								T						T	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	I	D	S	V	A	A	L	V	P	R	A	E	I	E	G	L	Q	A	R	L	M	S	Q	A	L	R	K	M	T	G	A	L	N	N	S	G	T	T	A	I	F	I	N	Q	T	G	G	K	A	L	K	F	Y	A	S	V	R	L	D	V	R	R	I	E	T	L	K	D	G	T
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		S		S	T	T																																										T	T						S														S	S
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.
Sequence	D	A	V	G	N	R	T	R	V	K	V	V	K	N	K	V	S	P	P	F	K	Q	A	E	F	D	I	L	Y	G	Q	G	I
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S		S												S	S	S												T	T	T	B