Standard Mode | Switch to Expert Mode | Login to view past jobsRetrieve Phyre Job Id
 
Subscribe to Phyre at Google Groups
Email:
Visit Phyre at Google Groups
 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c2iy3A_

Fold library idPDB HeaderMoleculeTitle
c2iy3A_PDB header: rna-bindingChain: A: PDB Molecule: signal recognition particle protein ffh;PDBTitle: structure of the e. coli signal recognition particle2 bound to a translating ribosome


Added to library: Tue Mar 16 12:25:30 2010
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence MFQQLSARLQEAIGRLRGRGRITEEDLKATLREIRRALMDADVNLEVARDFVERVREEALGKQVLESLTP
Predicted secondary structure




















SS confidence





































































Known secondary structure (DSSP)

TTTS
S

TTT

TTTTT
S
 .........80.........90.........100.........110.........120.........130.........140
Sequence AEVILATVYEALKEALGGEARLPVLKDRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPA
Predicted secondary structure




























SS confidence





































































Known secondary structure (DSSP) TTSS






SS


TTSSTT



SS
 .........150.........160.........170.........180.........190.........200.........210
Sequence AREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVLG
Predicted secondary structure























SS confidence





































































Known secondary structure (DSSP) T



TT

T
S



SS


 .........220.........230.........240.........250.........260.........270.........280
Sequence PDEVLLVLDAMTGQEALSVARAFDEKVGVTGLVLTKLDGDARGGAALSARHVTGKPIYFAGVSEKPEGLE
Predicted secondary structure






























SS confidence





































































Known secondary structure (DSSP)
S
SSS
SS




SSS
S

S





B


SSGGG
B
 .........290.........300.........310.........320.........330.........340.........350
Sequence PFYPERLAGRILGMGDIESILEKVKGLEEYDKIQKKMEDVMEGKGKLTLRDVYAQIIALRKMGPLSKVLQ
Predicted secondary structure


















SS confidence





































































Known secondary structure (DSSP)


S
TBTTBTTGGGGSSS





S




TTS
STT
 .........360.........370.........380.........390.........400.........410.........420
Sequence HIPGLGIMLPTPSEDQLKIGEEKIRRWLAALNSMTYKELENPNIIDKSRMRRIAEGSGLEVEEVRELLEW
Predicted secondary structure




























SS confidence





































































Known secondary structure (DSSP) S

SS




SSS





TTTTTS
TTTTTSTT


TTT

TTT
 .........430..
Sequence YNNMNRLLKMVK
Predicted secondary structure

SS confidence











Known secondary structure (DSSP) TTTTTTS



Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


Phyre is now FREE for commercial users!

All images and data generated by Phyre2 are free to use in any publication with acknowledgement

Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
© Structural Bioinformatics Group, Imperial College, London
Michael Sternberg 
Disclaimer
Terms and Conditions
Structural Biology Group logo Imperial logo
BBSRC logo
Phyre2 is part of Genome3D