Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP0AG30
DateThu Jan 5 11:27:58 GMT 2012
Unique Job ID0f5ffba8cf711fba

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template c1xpuB_
Top template information
PDB header:transcription/rna
Chain: B: PDB Molecule:rho transcription termination factor;
PDBTitle: structural mechanism of inhibition of the rho transcription2 termination factor by the antibiotic 5a-(3-formylphenylsulfanyl)-3 dihydrobicyclomycin (fpdb)
Confidence and coverage
Confidence:100.0% Coverage: 97%
408 residues ( 97% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MNLTELKNTPVSELITLGENMGLENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQD
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Disorder  ???


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?????

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   .........70.........80.........90.........100.........110.........120
Sequence  GFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVN
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Disorder 








????????????





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????
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?
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   .........130.........140.........150.........160.........170.........180
Sequence  FDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPP
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Disorder 


?

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?
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   .........190.........200.........210.........220.........230.........240
Sequence  KAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHV
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Disorder 
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   .........250.........260.........270.........280.........290.........300
Sequence  QVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHRPKRF
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???????????
?????




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   .........310.........320.........330.........340.........350.........360
Sequence  FGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDY
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Disorder 


?
?????










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   .........370.........380.........390.........400.........410.........
Sequence  NRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFLINKLAMTKTNDDFFEMMKRS
Secondary structure 














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Disorder 

?


?

?































???????




?????
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Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 1xpu chain B

3D model

Region: 1 - 417
Aligned: 408
Modelled: 417
Confidence: 100.0%
Identity: 100%
PDB header:transcription/rna
Chain: B: PDB Molecule:rho transcription termination factor;
PDBTitle: structural mechanism of inhibition of the rho transcription2 termination factor by the antibiotic 5a-(3-formylphenylsulfanyl)-3 dihydrobicyclomycin (fpdb)

Phyre2

PDB 3l0o chain B

3D model

Region: 51 - 416
Aligned: 347
Modelled: 366
Confidence: 100.0%
Identity: 58%
PDB header:hydrolase
Chain: B: PDB Molecule:transcription termination factor rho;
PDBTitle: structure of rna-free rho transcription termination factor from2 thermotoga maritima

Phyre2

PDB 1xpu chain A domain 3

3D model

Region: 129 - 417
Aligned: 282
Modelled: 289
Confidence: 100.0%
Identity: 100%
Fold: P-loop containing nucleoside triphosphate hydrolases
Superfamily: P-loop containing nucleoside triphosphate hydrolases
Family: RecA protein-like (ATPase-domain)

Phyre2

PDB 1sky chain E

3D model

Region: 90 - 418
Aligned: 326
Modelled: 328
Confidence: 100.0%
Identity: 18%
PDB header:atp synthase
Chain: E: PDB Molecule:f1-atpase;
PDBTitle: crystal structure of the nucleotide free alpha3beta3 sub-complex of2 f1-atpase from the thermophilic bacillus ps3

Phyre2

PDB 2dpy chain A

3D model

Region: 90 - 418
Aligned: 319
Modelled: 329
Confidence: 100.0%
Identity: 21%
PDB header:hydrolase
Chain: A: PDB Molecule:flagellum-specific atp synthase;
PDBTitle: crystal structure of the flagellar type iii atpase flii

Phyre2

PDB 2jiz chain D

3D model

Region: 90 - 418
Aligned: 326
Modelled: 329
Confidence: 100.0%
Identity: 16%
PDB header:hydrolase
Chain: D: PDB Molecule:atp synthase subunit beta;
PDBTitle: the structure of f1-atpase inhibited by resveratrol.

Phyre2

PDB 2w6j chain D

3D model

Region: 90 - 418
Aligned: 326
Modelled: 329
Confidence: 100.0%
Identity: 16%
PDB header:hydrolase
Chain: D: PDB Molecule:atp synthase subunit beta, mitochondrial;
PDBTitle: low resolution structures of bovine mitochondrial f1-atpase2 during controlled dehydration: hydration state 5.

Phyre2

PDB 1fx0 chain B

3D model

Region: 90 - 418
Aligned: 326
Modelled: 329
Confidence: 100.0%
Identity: 17%
PDB header:hydrolase
Chain: B: PDB Molecule:atp synthase beta chain;
PDBTitle: crystal structure of the chloroplast f1-atpase from spinach

Phyre2

PDB 2r9v chain A

3D model

Region: 90 - 399
Aligned: 307
Modelled: 310
Confidence: 100.0%
Identity: 16%
PDB header:hydrolase
Chain: A: PDB Molecule:atp synthase subunit alpha;
PDBTitle: crystal structure of atp synthase subunit alpha (tm1612) from2 thermotoga maritima at 2.10 a resolution

Phyre2

PDB 2w6f chain A

3D model

Region: 90 - 403
Aligned: 313
Modelled: 314
Confidence: 100.0%
Identity: 16%
PDB header:hydrolase
Chain: A: PDB Molecule:atp synthase subunit alpha heart isoform,
PDBTitle: low resolution structures of bovine mitochondrial f1-atpase2 during controlled dehydration: hydration state 2.

Phyre2

PDB 2qe7 chain C

3D model

Region: 90 - 403
Aligned: 310
Modelled: 314
Confidence: 100.0%
Identity: 18%
PDB header:hydrolase
Chain: C: PDB Molecule:atp synthase subunit alpha;
PDBTitle: crystal structure of the f1-atpase from the thermoalkaliphilic2 bacterium bacillus sp. ta2.a1

Phyre2

PDB 2obl chain A

3D model

Region: 89 - 418
Aligned: 308
Modelled: 326
Confidence: 100.0%
Identity: 26%
PDB header:hydrolase
Chain: A: PDB Molecule:escn;
PDBTitle: structural and biochemical analysis of a prototypical atpase from the2 type iii secretion system of pathogenic bacteria

Phyre2

PDB 3a5d chain B

3D model

Region: 6 - 400
Aligned: 386
Modelled: 395
Confidence: 100.0%
Identity: 18%
PDB header:hydrolase
Chain: B: PDB Molecule:v-type atp synthase alpha chain;
PDBTitle: inter-subunit interaction and quaternary rearrangement2 defined by the central stalk of prokaryotic v1-atpase

Phyre2

PDB 1w0j chain B

3D model

Region: 90 - 394
Aligned: 304
Modelled: 305
Confidence: 100.0%
Identity: 15%
PDB header:hydrolase
Chain: B: PDB Molecule:atp synthase alpha chain heart isoform,
PDBTitle: beryllium fluoride inhibited bovine f1-atpase

Phyre2

PDB 1kmh chain A

3D model

Region: 54 - 399
Aligned: 325
Modelled: 331
Confidence: 100.0%
Identity: 16%
PDB header:hydrolase
Chain: A: PDB Molecule:atpase alpha subunit;
PDBTitle: crystal structure of spinach chloroplast f1-atpase2 complexed with tentoxin

Phyre2

PDB 3oaa chain C

3D model

Region: 90 - 403
Aligned: 311
Modelled: 314
Confidence: 100.0%
Identity: 17%
PDB header:hydrolase/transport protein
Chain: C: PDB Molecule:atp synthase subunit alpha;
PDBTitle: structure of the e.coli f1-atp synthase inhibited by subunit epsilon

Phyre2

PDB 3a5d chain M

3D model

Region: 90 - 418
Aligned: 328
Modelled: 329
Confidence: 100.0%
Identity: 16%
PDB header:hydrolase
Chain: M: PDB Molecule:v-type atp synthase beta chain;
PDBTitle: inter-subunit interaction and quaternary rearrangement2 defined by the central stalk of prokaryotic v1-atpase

Phyre2

PDB 2c61 chain A

3D model

Region: 80 - 418
Aligned: 338
Modelled: 339
Confidence: 100.0%
Identity: 16%
PDB header:hydrolase
Chain: A: PDB Molecule:a-type atp synthase non-catalytic subunit b;
PDBTitle: crystal structure of the non-catalytic b subunit of a-type2 atpase from m. mazei go1

Phyre2

PDB 2jdi chain A domain 3

3D model

Region: 111 - 372
Aligned: 257
Modelled: 258
Confidence: 100.0%
Identity: 18%
Fold: P-loop containing nucleoside triphosphate hydrolases
Superfamily: P-loop containing nucleoside triphosphate hydrolases
Family: RecA protein-like (ATPase-domain)

Phyre2

PDB 1sky chain B domain 3

3D model

Region: 90 - 372
Aligned: 265
Modelled: 279
Confidence: 100.0%
Identity: 19%
Fold: P-loop containing nucleoside triphosphate hydrolases
Superfamily: P-loop containing nucleoside triphosphate hydrolases
Family: RecA protein-like (ATPase-domain)

Phyre2
1

c1xpuB_
2

c3l0oB_
3

d1xpua3
4

c1skyE_
5

c2dpyA_
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c2jizD_
7

c2w6jD_
8

c1fx0B_
9

c2r9vA_
10

c2w6fA_
11

c2qe7C_
12

c2oblA_
13

c3a5dB_
14

c1w0jB_
15

c1kmhA_
16

c3oaaC_
17

c3a5dM_
18

c2c61A_
19

d2jdia3
20

d1skyb3
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Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c1xpuB_



100.0 100 PDB header:transcription/rna
Chain: B: PDB Molecule:rho transcription termination factor;
PDBTitle: structural mechanism of inhibition of the rho transcription2 termination factor by the antibiotic 5a-(3-formylphenylsulfanyl)-3 dihydrobicyclomycin (fpdb)
2c3l0oB_



100.0 58 PDB header:hydrolase
Chain: B: PDB Molecule:transcription termination factor rho;
PDBTitle: structure of rna-free rho transcription termination factor from2 thermotoga maritima
3d1xpua3



100.0 100 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:RecA protein-like (ATPase-domain)
4c1skyE_



100.0 18 PDB header:atp synthase
Chain: E: PDB Molecule:f1-atpase;
PDBTitle: crystal structure of the nucleotide free alpha3beta3 sub-complex of2 f1-atpase from the thermophilic bacillus ps3
5c2dpyA_



100.0 21 PDB header:hydrolase
Chain: A: PDB Molecule:flagellum-specific atp synthase;
PDBTitle: crystal structure of the flagellar type iii atpase flii
6c2jizD_



100.0 16 PDB header:hydrolase
Chain: D: PDB Molecule:atp synthase subunit beta;
PDBTitle: the structure of f1-atpase inhibited by resveratrol.
7c2w6jD_



100.0 16 PDB header:hydrolase
Chain: D: PDB Molecule:atp synthase subunit beta, mitochondrial;
PDBTitle: low resolution structures of bovine mitochondrial f1-atpase2 during controlled dehydration: hydration state 5.
8c1fx0B_



100.0 17 PDB header:hydrolase
Chain: B: PDB Molecule:atp synthase beta chain;
PDBTitle: crystal structure of the chloroplast f1-atpase from spinach
9c2r9vA_



100.0 16 PDB header:hydrolase
Chain: A: PDB Molecule:atp synthase subunit alpha;
PDBTitle: crystal structure of atp synthase subunit alpha (tm1612) from2 thermotoga maritima at 2.10 a resolution
10c2w6fA_



100.0 16 PDB header:hydrolase
Chain: A: PDB Molecule:atp synthase subunit alpha heart isoform,
PDBTitle: low resolution structures of bovine mitochondrial f1-atpase2 during controlled dehydration: hydration state 2.
11c2qe7C_



100.0 18 PDB header:hydrolase
Chain: C: PDB Molecule:atp synthase subunit alpha;
PDBTitle: crystal structure of the f1-atpase from the thermoalkaliphilic2 bacterium bacillus sp. ta2.a1
12c2oblA_



100.0 26 PDB header:hydrolase
Chain: A: PDB Molecule:escn;
PDBTitle: structural and biochemical analysis of a prototypical atpase from the2 type iii secretion system of pathogenic bacteria
13c3a5dB_



100.0 18 PDB header:hydrolase
Chain: B: PDB Molecule:v-type atp synthase alpha chain;
PDBTitle: inter-subunit interaction and quaternary rearrangement2 defined by the central stalk of prokaryotic v1-atpase
14c1w0jB_



100.0 15 PDB header:hydrolase
Chain: B: PDB Molecule:atp synthase alpha chain heart isoform,
PDBTitle: beryllium fluoride inhibited bovine f1-atpase
15c1kmhA_



100.0 16 PDB header:hydrolase
Chain: A: PDB Molecule:atpase alpha subunit;
PDBTitle: crystal structure of spinach chloroplast f1-atpase2 complexed with tentoxin
16c3oaaC_



100.0 17 PDB header:hydrolase/transport protein
Chain: C: PDB Molecule:atp synthase subunit alpha;
PDBTitle: structure of the e.coli f1-atp synthase inhibited by subunit epsilon
17c3a5dM_



100.0 16 PDB header:hydrolase
Chain: M: PDB Molecule:v-type atp synthase beta chain;
PDBTitle: inter-subunit interaction and quaternary rearrangement2 defined by the central stalk of prokaryotic v1-atpase
18c2c61A_



100.0 16 PDB header:hydrolase
Chain: A: PDB Molecule:a-type atp synthase non-catalytic subunit b;
PDBTitle: crystal structure of the non-catalytic b subunit of a-type2 atpase from m. mazei go1
19d2jdia3



100.0 18 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:RecA protein-like (ATPase-domain)
20d1skyb3



100.0 19 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:RecA protein-like (ATPase-domain)
21d2jdid3



not modelled 100.0 20 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:RecA protein-like (ATPase-domain)
22d1fx0a3



not modelled 100.0 18 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:RecA protein-like (ATPase-domain)
23d1fx0b3



not modelled 100.0 21 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:RecA protein-like (ATPase-domain)
24c1vdzA_



not modelled 100.0 20 PDB header:hydrolase
Chain: A: PDB Molecule:a-type atpase subunit a;
PDBTitle: crystal structure of a-type atpase catalytic subunit a from2 pyrococcus horikoshii ot3
25d1skye3



not modelled 100.0 20 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:RecA protein-like (ATPase-domain)
26c2a8vA_



not modelled 100.0 100 PDB header:protein/rna
Chain: A: PDB Molecule:rna binding domain of rho transcription
PDBTitle: rho transcription termination factor/rna complex
27d1a62a2



not modelled 99.9 100 Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Cold shock DNA-binding domain-like
28d1tf7a2



not modelled 98.8 16 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:RecA protein-like (ATPase-domain)
29c1u9iA_



not modelled 98.8 12 PDB header:circadian clock protein
Chain: A: PDB Molecule:kaic;
PDBTitle: crystal structure of circadian clock protein kaic with phosphorylation2 sites
30d1tf7a1



not modelled 98.3 13 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:RecA protein-like (ATPase-domain)
31c2recB_



not modelled 98.3 20 PDB header:helicase
PDB COMPND:
32d1mo6a1



not modelled 98.2 19 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:RecA protein-like (ATPase-domain)
33c2ztsB_



not modelled 98.2 13 PDB header:atp-binding protein
Chain: B: PDB Molecule:putative uncharacterized protein ph0186;
PDBTitle: crystal structure of kaic-like protein ph0186 from2 hyperthermophilic archaea pyrococcus horikoshii ot3
34c2zroA_



not modelled 98.1 22 PDB header:hydrolase
Chain: A: PDB Molecule:protein reca;
PDBTitle: msreca adp form iv
35c3hr8A_



not modelled 98.1 17 PDB header:recombination
Chain: A: PDB Molecule:protein reca;
PDBTitle: crystal structure of thermotoga maritima reca
36d1xp8a1



not modelled 98.1 22 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:RecA protein-like (ATPase-domain)
37c2w0mA_



not modelled 98.1 13 PDB header:unknown function
Chain: A: PDB Molecule:sso2452;
PDBTitle: crystal structure of sso2452 from sulfolobus solfataricus2 p2
38d1ubea1



not modelled 98.0 21 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:RecA protein-like (ATPase-domain)
39d1n0wa_



not modelled 98.0 16 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:RecA protein-like (ATPase-domain)
40d2i1qa2



not modelled 97.9 13 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:RecA protein-like (ATPase-domain)
41c1xp8A_



not modelled 97.9 22 PDB header:dna binding protein
Chain: A: PDB Molecule:reca protein;
PDBTitle: "deinococcus radiodurans reca in complex with atp-gamma-s"
42d1u94a1



not modelled 97.8 18 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:RecA protein-like (ATPase-domain)
43c2dflA_



not modelled 97.8 17 PDB header:recombination
Chain: A: PDB Molecule:dna repair and recombination protein rada;
PDBTitle: crystal structure of left-handed rada filament
44d1v5wa_



not modelled 97.8 19 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:RecA protein-like (ATPase-domain)
45c3ldaA_



not modelled 97.7 14 PDB header:dna binding protein
Chain: A: PDB Molecule:dna repair protein rad51;
PDBTitle: yeast rad51 h352y filament interface mutant
46d1pzna2



not modelled 97.7 15 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:RecA protein-like (ATPase-domain)
47c3io5B_



not modelled 97.7 20 PDB header:dna binding protein
Chain: B: PDB Molecule:recombination and repair protein;
PDBTitle: crystal structure of a dimeric form of the uvsx recombinase core2 domain from enterobacteria phage t4
48c1t4gA_



not modelled 97.7 14 PDB header:recombination
Chain: A: PDB Molecule:dna repair and recombination protein rada;
PDBTitle: atpase in complex with amp-pnp
49c1szpC_



not modelled 97.7 15 PDB header:dna binding protein
Chain: C: PDB Molecule:dna repair protein rad51;
PDBTitle: a crystal structure of the rad51 filament
50c2zjbB_



not modelled 97.6 19 PDB header:recombination
Chain: B: PDB Molecule:meiotic recombination protein dmc1/lim15 homolog;
PDBTitle: crystal structure of the human dmc1-m200v polymorphic2 variant
51d1szpa2



not modelled 97.5 14 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:RecA protein-like (ATPase-domain)
52c1pznG_



not modelled 97.5 15 PDB header:recombination
Chain: G: PDB Molecule:dna repair and recombination protein rad51;
PDBTitle: rad51 (rada)
53c2cvhB_



not modelled 97.5 15 PDB header:dna binding protein
Chain: B: PDB Molecule:dna repair and recombination protein radb;
PDBTitle: crystal structure of the radb recombinase
54c2vyeA_



not modelled 97.5 20 PDB header:hydrolase
Chain: A: PDB Molecule:replicative dna helicase;
PDBTitle: crystal structure of the dnac-ssdna complex
55c2z4rB_



not modelled 97.5 25 PDB header:dna binding protein
Chain: B: PDB Molecule:chromosomal replication initiator protein dnaa;
PDBTitle: crystal structure of domain iii from the thermotoga2 maritima replication initiation protein dnaa
56c3bh0A_



not modelled 97.5 19 PDB header:replication
Chain: A: PDB Molecule:dnab-like replicative helicase;
PDBTitle: atpase domain of g40p
57d1cr2a_



not modelled 97.4 15 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:RecA protein-like (ATPase-domain)
58c2q6tB_



not modelled 97.4 21 PDB header:hydrolase
Chain: B: PDB Molecule:dnab replication fork helicase;
PDBTitle: crystal structure of the thermus aquaticus dnab monomer
59c3dmdA_



not modelled 97.4 13 PDB header:transport protein
Chain: A: PDB Molecule:signal recognition particle receptor;
PDBTitle: structures and conformations in solution of the signal recognition2 particle receptor from the archaeon pyrococcus furiosus
60c2dr3A_



not modelled 97.4 16 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:upf0273 protein ph0284;
PDBTitle: crystal structure of reca superfamily atpase ph0284 from pyrococcus2 horikoshii ot3
61c3pvsA_



not modelled 97.3 27 PDB header:recombination
Chain: A: PDB Molecule:replication-associated recombination protein a;
PDBTitle: structure and biochemical activities of escherichia coli mgsa
62c3bs4A_



not modelled 97.2 13 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein ph0321;
PDBTitle: crystal structure of uncharacterized protein ph0321 from pyrococcus2 horikoshii in complex with an unknown peptide
63d1a62a1



not modelled 97.2 94 Fold:LEM/SAP HeH motif
Superfamily:Rho N-terminal domain-like
Family:Rho termination factor, N-terminal domain
64c2qbyA_



not modelled 97.1 14 PDB header:replication/dna
Chain: A: PDB Molecule:cell division control protein 6 homolog 1;
PDBTitle: crystal structure of a heterodimer of cdc6/orc1 initiators2 bound to origin dna (from s. solfataricus)
65c3b9qA_



not modelled 97.1 20 PDB header:protein transport
Chain: A: PDB Molecule:chloroplast srp receptor homolog, alpha subunit
PDBTitle: the crystal structure of cpftsy from arabidopsis thaliana
66c2og2A_



not modelled 97.1 20 PDB header:protein transport
Chain: A: PDB Molecule:putative signal recognition particle receptor;
PDBTitle: crystal structure of chloroplast ftsy from arabidopsis2 thaliana
67c3cmvG_



not modelled 97.1 16 PDB header:recombination
Chain: G: PDB Molecule:protein reca;
PDBTitle: mechanism of homologous recombination from the reca-2 ssdna/dsdna structures
68c2j7pA_



not modelled 97.1 16 PDB header:signal recognition
Chain: A: PDB Molecule:signal recognition particle protein;
PDBTitle: gmppnp-stabilized ng domain complex of the srp gtpases ffh2 and ftsy
69c2cnwF_



not modelled 97.1 11 PDB header:signal recognition
Chain: F: PDB Molecule:cell division protein ftsy;
PDBTitle: gdpalf4 complex of the srp gtpases ffh and ftsy
70d1vmaa2



not modelled 97.1 20 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nitrogenase iron protein-like
71d1nlfa_



not modelled 97.1 22 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:RecA protein-like (ATPase-domain)
72c1fnnB_



not modelled 97.0 14 PDB header:cell cycle
Chain: B: PDB Molecule:cell division control protein 6;
PDBTitle: crystal structure of cdc6p from pyrobaculum aerophilum
73d1ye8a1



not modelled 97.0 26 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:RecA protein-like (ATPase-domain)
74d1w5sa2



not modelled 97.0 14 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Extended AAA-ATPase domain
75c1vmaA_



not modelled 96.9 17 PDB header:protein transport
Chain: A: PDB Molecule:cell division protein ftsy;
PDBTitle: crystal structure of cell division protein ftsy (tm0570) from2 thermotoga maritima at 1.60 a resolution
76d1okkd2



not modelled 96.9 16 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nitrogenase iron protein-like
77d1fnna2



not modelled 96.9 11 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Extended AAA-ATPase domain
78d1qvra2



not modelled 96.8 27 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Extended AAA-ATPase domain
79c2gksB_



not modelled 96.8 20 PDB header:transferase
Chain: B: PDB Molecule:bifunctional sat/aps kinase;
PDBTitle: crystal structure of the bi-functional atp sulfurylase-aps kinase from2 aquifex aeolicus, a chemolithotrophic thermophile
80d1lw7a2



not modelled 96.8 14 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nucleotide and nucleoside kinases
81d1qzxa3



not modelled 96.8 18 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nitrogenase iron protein-like
82d2i3ba1



not modelled 96.8 17 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:RecA protein-like (ATPase-domain)
83c1zu4A_



not modelled 96.8 23 PDB header:protein transport
Chain: A: PDB Molecule:ftsy;
PDBTitle: crystal structure of ftsy from mycoplasma mycoides- space2 group p21212
84c2v1uA_



not modelled 96.7 18 PDB header:replication
Chain: A: PDB Molecule:cell division control protein 6 homolog;
PDBTitle: structure of the aeropyrum pernix orc1 protein in complex2 with dna
85c3bosA_



not modelled 96.7 17 PDB header:hydrolase regulator,dna binding protein
Chain: A: PDB Molecule:putative dna replication factor;
PDBTitle: crystal structure of a putative dna replication regulator hda2 (sama_1916) from shewanella amazonensis sb2b at 1.75 a resolution
86c2w58B_



not modelled 96.7 15 PDB header:hydrolase
Chain: B: PDB Molecule:primosome component (helicase loader);
PDBTitle: crystal structure of the dnai
87d1x6va3



not modelled 96.7 15 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Adenosine-5'phosphosulfate kinase (APS kinase)
88d1ls1a2



not modelled 96.7 16 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nitrogenase iron protein-like
89d2qy9a2



not modelled 96.7 18 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nitrogenase iron protein-like
90c2j37W_



not modelled 96.7 13 PDB header:ribosome
Chain: W: PDB Molecule:signal recognition particle 54 kda protein
PDBTitle: model of mammalian srp bound to 80s rncs
91d1d2na_



not modelled 96.6 21 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Extended AAA-ATPase domain
92c2hcbC_



not modelled 96.6 22 PDB header:replication
Chain: C: PDB Molecule:chromosomal replication initiator protein dnaa;
PDBTitle: structure of amppcp-bound dnaa from aquifex aeolicus
93d1np6a_



not modelled 96.6 22 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nitrogenase iron protein-like
94c3b85A_



not modelled 96.6 15 PDB header:hydrolase
Chain: A: PDB Molecule:phosphate starvation-inducible protein;
PDBTitle: crystal structure of predicted phosphate starvation-induced atpase2 phoh2 from corynebacterium glutamicum
95c1nsfA_



not modelled 96.6 21 PDB header:protein transport
Chain: A: PDB Molecule:n-ethylmaleimide sensitive factor;
PDBTitle: d2 hexamerization domain of n-ethylmaleimide sensitive factor (nsf)
96c1yqtA_



not modelled 96.6 23 PDB header:hydrolyase/translation
Chain: A: PDB Molecule:rnase l inhibitor;
PDBTitle: rnase-l inhibitor
97c3d8bB_



not modelled 96.6 20 PDB header:hydrolase
Chain: B: PDB Molecule:fidgetin-like protein 1;
PDBTitle: crystal structure of human fidgetin-like protein 1 in complex with adp
98c3bgwD_



not modelled 96.5 25 PDB header:replication
Chain: D: PDB Molecule:dnab-like replicative helicase;
PDBTitle: the structure of a dnab-like replicative helicase and its interactions2 with primase
99c3ec2A_



not modelled 96.5 21 PDB header:replication
Chain: A: PDB Molecule:dna replication protein dnac;
PDBTitle: crystal structure of the dnac helicase loader
100d2ak3a1



not modelled 96.5 26 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nucleotide and nucleoside kinases
101c3pfiB_



not modelled 96.5 26 PDB header:hydrolase
Chain: B: PDB Molecule:holliday junction atp-dependent dna helicase ruvb;
PDBTitle: 2.7 angstrom resolution crystal structure of a probable holliday2 junction dna helicase (ruvb) from campylobacter jejuni subsp. jejuni3 nctc 11168 in complex with adenosine-5'-diphosphate
102c2iy3A_



not modelled 96.5 17 PDB header:rna-binding
Chain: A: PDB Molecule:signal recognition particle protein ffh;
PDBTitle: structure of the e. coli signal recognition particle2 bound to a translating ribosome
103c2a5yB_



not modelled 96.5 8 PDB header:apoptosis
Chain: B: PDB Molecule:ced-4;
PDBTitle: structure of a ced-4/ced-9 complex
104c2chvE_



not modelled 96.4 17 PDB header:dna-binding protein
Chain: E: PDB Molecule:replication factor c small subunit;
PDBTitle: replication factor c adpnp complex
105c2qz4A_



not modelled 96.4 19 PDB header:hydrolase
Chain: A: PDB Molecule:paraplegin;
PDBTitle: human paraplegin, aaa domain in complex with adp
106c3iytG_



not modelled 96.4 10 PDB header:apoptosis
Chain: G: PDB Molecule:apoptotic protease-activating factor 1;
PDBTitle: structure of an apoptosome-procaspase-9 card complex
107c3te6A_



not modelled 96.4 11 PDB header:gene regulation
Chain: A: PDB Molecule:regulatory protein sir3;
PDBTitle: crystal structure of the s. cerevisiae sir3 aaa+ domain
108d1l8qa2



not modelled 96.4 22 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Extended AAA-ATPase domain
109d1ki9a_



not modelled 96.4 11 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nucleotide and nucleoside kinases
110c2iutA_



not modelled 96.4 20 PDB header:membrane protein
Chain: A: PDB Molecule:dna translocase ftsk;
PDBTitle: p. aeruginosa ftsk motor domain, dimeric
111c2wjyA_



not modelled 96.4 33 PDB header:hydrolase
Chain: A: PDB Molecule:regulator of nonsense transcripts 1;
PDBTitle: crystal structure of the complex between human nonsense2 mediated decay factors upf1 and upf2 orthorhombic form
112c1lw7A_



not modelled 96.3 18 PDB header:transferase
Chain: A: PDB Molecule:transcriptional regulator nadr;
PDBTitle: nadr protein from haemophilus influenzae
113d2qm8a1



not modelled 96.3 18 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nitrogenase iron protein-like
114d2awna2



not modelled 96.3 37 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:ABC transporter ATPase domain-like
115c1z6tC_



not modelled 96.3 9 PDB header:apoptosis
Chain: C: PDB Molecule:apoptotic protease activating factor 1;
PDBTitle: structure of the apoptotic protease-activating factor 12 bound to adp
116c2yhsA_



not modelled 96.3 18 PDB header:cell cycle
Chain: A: PDB Molecule:cell division protein ftsy;
PDBTitle: structure of the e. coli srp receptor ftsy
117d1tmka_



not modelled 96.3 20 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nucleotide and nucleoside kinases
118c2iusB_



not modelled 96.3 13 PDB header:membrane protein
Chain: B: PDB Molecule:dna translocase ftsk;
PDBTitle: e. coli ftsk motor domain
119c2c9oC_



not modelled 96.2 38 PDB header:hydrolase
Chain: C: PDB Molecule:ruvb-like 1;
PDBTitle: 3d structure of the human ruvb-like helicase ruvbl1
120c3dm5A_



not modelled 96.2 18 PDB header:rna binding protein, transport protein
Chain: A: PDB Molecule:signal recognition 54 kda protein;
PDBTitle: structures of srp54 and srp19, the two proteins assembling2 the ribonucleic core of the signal recognition particle3 from the archaeon pyrococcus furiosus.

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite



Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0