PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c2z4rB_

Fold library id	PDB Header	Molecule	Title
c2z4rB_	PDB header: dna binding protein	Chain: B: PDB Molecule: chromosomal replication initiator protein dnaa;	PDBTitle: crystal structure of domain iii from the thermotoga2 maritima replication initiation protein dnaa

Links to external resources
Added to library: Tue Mar 16 13:38:20 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence T P L N P D Y T F E N F V V G P G N S F A Y H A A L E V A K H P G R Y N P L F I Y G G V G L G K T H L L Q S I G N Y V V Q N E P D L R V M Y

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S
S G G G
T T T S T T T S
S S S S S S S S S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence I T S E K F L N D L V D S M K E G K L N E F R E K Y R K K V D I L L I D D V Q F L I G K T G V Q T E L F H T F N E L H D S G K Q I V I C S D

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T S
T T T
S
G G G G T T
T T T
S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence R E P Q K L S E F Q D R L V S R F Q M G L V A K L E P P D E E T R K S I A R K M L E I E H G E L P E E V L N F V A E N V D D N L R R L R G A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S
T T T
S S
S S
T
T T
S

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240

Sequence I I K L L V Y K E T T G K E V D L K E A I L L L K D F I K P

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S S S
T G G G T

Download: PDB structure FASTA sequence
Hidden Markov model

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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis

Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

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Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	T	P	L	N	P	D	Y	T	F	E	N	F	V	V	G	P	G	N	S	F	A	Y	H	A	A	L	E	V	A	K	H	P	G	R	Y	N	P	L	F	I	Y	G	G	V	G	L	G	K	T	H	L	L	Q	S	I	G	N	Y	V	V	Q	N	E	P	D	L	R	V	M	Y
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)					S	S		S	G	G	G					T	T	T													S	T	T	T	S								S	S	S	S	S																S	S	S	S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	I	T	S	E	K	F	L	N	D	L	V	D	S	M	K	E	G	K	L	N	E	F	R	E	K	Y	R	K	K	V	D	I	L	L	I	D	D	V	Q	F	L	I	G	K	T	G	V	Q	T	E	L	F	H	T	F	N	E	L	H	D	S	G	K	Q	I	V	I	C	S	D
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																T	S										T	T	T		S							G	G	G	G	T	T																	T	T	T								S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	R	E	P	Q	K	L	S	E	F	Q	D	R	L	V	S	R	F	Q	M	G	L	V	A	K	L	E	P	P	D	E	E	T	R	K	S	I	A	R	K	M	L	E	I	E	H	G	E	L	P	E	E	V	L	N	F	V	A	E	N	V	D	D	N	L	R	R	L	R	G	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S		T	T	T		S	S											S	S																									T					T	T											S
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence	I	I	K	L	L	V	Y	K	E	T	T	G	K	E	V	D	L	K	E	A	I	L	L	L	K	D	F	I	K	P
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)											S	S	S											T	G	G	G	T