Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	A	T	K	L	Q	D	G	N	T	P	C	L	A	A	T	P	S	E	P	R	P	T	V	L	V	F	D	S	G	V	G	G	L	S	V	Y	D	E	I	R	H	L	L	P	D	L	H	Y	I	Y	A	F	D	N	V	A	F	P	Y
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		G	E	K	S	E	A	F	I	V	E	R	V	V	A	I	V	T	A	V	Q	E	R	Y	P	L	A	L	A	V	V	A	C	N	T	A	S	T	V	S	L	P	A	L	R	E	K	F	D	F	P	V	V	G	V	V	P	A	I	K	P
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		A	A	R	L	T	A	N	G	I	V	G	L	L	A	T	R	G	T	V	K	R	S	Y	T	H	E	L	I	A	R	F	A	N	E	C	Q	I	E	M	L	G	S	A	E	M	V	E	L	A	E	A	K	L	H	G	E	D	V	S	L
Secondary structure
SS confidence
Disorder						?																																																	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		D	A	L	K	R	I	L	R	P	W	L	R	M	K	E	P	P	D	T	V	V	L	G	C	T	H	F	P	L	L	Q	E	E	L	L	Q	V	L	P	E	G	T	R	L	V	D	S	G	A	A	I	A	R	R	T	A	W	L	L	E
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.
Sequence		H	E	A	P	D	A	K	S	A	D	A	N	I	A	F	C	M	A	M	T	P	G	A	E	Q	L	L	P	V	L	Q	R	Y	G	F	E	T	L	E	K	L	A	V	L	G
Secondary structure
SS confidence
Disorder			?	?	?	?	?	?	?	?																																	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2jfn chain A Region: 20 - 285 Aligned: 266 Modelled: 266 Confidence: 100.0% Identity: 100% PDB header:isomerase Chain: A: PDB Molecule:glutamate racemase; PDBTitle: crystal structure of escherichia coli glutamate racemase2 in complex with l-glutamate and activator udp-murnac-ala Phyre2 PDB 3hfr chain A Region: 19 - 283 Aligned: 260 Modelled: 260 Confidence: 100.0% Identity: 27% PDB header:isomerase Chain: A: PDB Molecule:glutamate racemase; PDBTitle: crystal structure of glutamate racemase from listeria monocytogenes Phyre2 PDB 2jfo chain B Region: 18 - 283 Aligned: 262 Modelled: 266 Confidence: 100.0% Identity: 26% PDB header:isomerase Chain: B: PDB Molecule:glutamate racemase; PDBTitle: crystal structure of enterococcus faecalis glutamate2 racemase in complex with d- and l-glutamate Phyre2 PDB 2jfq chain A Region: 20 - 284 Aligned: 260 Modelled: 265 Confidence: 100.0% Identity: 28% PDB header:isomerase Chain: A: PDB Molecule:glutamate racemase; PDBTitle: crystal structure of staphylococcus aureus glutamate2 racemase in complex with d-glutamate Phyre2 PDB 2dwu chain A Region: 20 - 283 Aligned: 259 Modelled: 264 Confidence: 100.0% Identity: 29% PDB header:isomerase Chain: A: PDB Molecule:glutamate racemase; PDBTitle: crystal structure of glutamate racemase isoform race1 from bacillus2 anthracis Phyre2 PDB 2gzm chain B Region: 19 - 284 Aligned: 261 Modelled: 266 Confidence: 100.0% Identity: 28% PDB header:isomerase Chain: B: PDB Molecule:glutamate racemase; PDBTitle: crystal structure of the glutamate racemase from bacillus2 anthracis Phyre2 PDB 1zuw chain A Region: 20 - 283 Aligned: 258 Modelled: 264 Confidence: 100.0% Identity: 27% PDB header:isomerase Chain: A: PDB Molecule:glutamate racemase 1; PDBTitle: crystal structure of b.subtilis glutamate racemase (race) with d-glu Phyre2 PDB 2oho chain A Region: 13 - 283 Aligned: 261 Modelled: 271 Confidence: 100.0% Identity: 29% PDB header:isomerase Chain: A: PDB Molecule:glutamate racemase; PDBTitle: structural basis for glutamate racemase inhibitor Phyre2 PDB 3out chain C Region: 20 - 284 Aligned: 256 Modelled: 265 Confidence: 100.0% Identity: 22% PDB header:isomerase Chain: C: PDB Molecule:glutamate racemase; PDBTitle: crystal structure of glutamate racemase from francisella tularensis2 subsp. tularensis schu s4 in complex with d-glutamate. Phyre2 PDB 2jfz chain B Region: 23 - 274 Aligned: 236 Modelled: 252 Confidence: 100.0% Identity: 26% PDB header:isomerase Chain: B: PDB Molecule:glutamate racemase; PDBTitle: crystal structure of helicobacter pylori glutamate racemase2 in complex with d-glutamate and an inhibitor Phyre2 PDB 1b74 chain A Region: 23 - 284 Aligned: 247 Modelled: 262 Confidence: 100.0% Identity: 27% PDB header:isomerase Chain: A: PDB Molecule:glutamate racemase; PDBTitle: glutamate racemase from aquifex pyrophilus Phyre2 PDB 2zsk chain A Region: 23 - 241 Aligned: 208 Modelled: 215 Confidence: 100.0% Identity: 18% PDB header:unknown function Chain: A: PDB Molecule:226aa long hypothetical aspartate racemase; PDBTitle: crystal structure of ph1733, an aspartate racemase2 homologue, from pyrococcus horikoshii ot3 Phyre2 PDB 1b74 chain A domain 1 Region: 23 - 126 Aligned: 103 Modelled: 104 Confidence: 100.0% Identity: 34% Fold: ATC-like Superfamily: Aspartate/glutamate racemase Family: Aspartate/glutamate racemase Phyre2 PDB 3ojc chain D Region: 24 - 238 Aligned: 203 Modelled: 215 Confidence: 100.0% Identity: 18% PDB header:isomerase Chain: D: PDB Molecule:putative aspartate/glutamate racemase; PDBTitle: crystal structure of a putative asp/glu racemase from yersinia pestis Phyre2 PDB 3s81 chain A Region: 20 - 243 Aligned: 211 Modelled: 222 Confidence: 100.0% Identity: 17% PDB header:isomerase Chain: A: PDB Molecule:putative aspartate racemase; PDBTitle: crystal structure of putative aspartate racemase from salmonella2 typhimurium Phyre2 PDB 2dx7 chain B Region: 22 - 242 Aligned: 209 Modelled: 221 Confidence: 100.0% Identity: 14% PDB header:isomerase Chain: B: PDB Molecule:aspartate racemase; PDBTitle: crystal structure of pyrococcus horikoshii ot3 aspartate racemase2 complex with citric acid Phyre2 PDB 1b74 chain A domain 2 Region: 127 - 281 Aligned: 144 Modelled: 155 Confidence: 100.0% Identity: 23% Fold: ATC-like Superfamily: Aspartate/glutamate racemase Family: Aspartate/glutamate racemase Phyre2 PDB 2vlb chain C Region: 21 - 240 Aligned: 207 Modelled: 220 Confidence: 100.0% Identity: 17% PDB header:lyase Chain: C: PDB Molecule:arylmalonate decarboxylase; PDBTitle: structure of unliganded arylmalonate decarboxylase Phyre2 PDB 3qvj chain B Region: 35 - 240 Aligned: 196 Modelled: 204 Confidence: 99.9% Identity: 18% PDB header:isomerase Chain: B: PDB Molecule:putative hydantoin racemase; PDBTitle: allantoin racemase from klebsiella pneumoniae Phyre2 PDB 2eq5 chain D Region: 37 - 242 Aligned: 175 Modelled: 183 Confidence: 99.9% Identity: 18% PDB header:isomerase Chain: D: PDB Molecule:228aa long hypothetical hydantoin racemase; PDBTitle: crystal structure of hydantoin racemase from pyrococcus horikoshii ot3 Phyre2 1 c2jfnA_ 2 c3hfrA_ 3 c2jfoB_ 4 c2jfqA_ 5 c2dwuA_ 6 c2gzmB_ 7 c1zuwA_ 8 c2ohoA_ 9 c3outC_ 10 c2jfzB_ 11 c1b74A_ 12 c2zskA_ 13 d1b74a1 14 c3ojcD_ 15 c3s81A_ 16 c2dx7B_ 17 d1b74a2 18 c2vlbC_ 19 c3qvjB_ 20 c2eq5D_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265 266 267 268 269 270 271 272 273 274 275 276 277

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c2jfnA_ 100.0 100 PDB header:isomerase Chain: A: PDB Molecule:glutamate racemase; PDBTitle: crystal structure of escherichia coli glutamate racemase2 in complex with l-glutamate and activator udp-murnac-ala 2 c3hfrA_ 100.0 27 PDB header:isomerase Chain: A: PDB Molecule:glutamate racemase; PDBTitle: crystal structure of glutamate racemase from listeria monocytogenes 3 c2jfoB_ 100.0 26 PDB header:isomerase Chain: B: PDB Molecule:glutamate racemase; PDBTitle: crystal structure of enterococcus faecalis glutamate2 racemase in complex with d- and l-glutamate 4 c2jfqA_ 100.0 28 PDB header:isomerase Chain: A: PDB Molecule:glutamate racemase; PDBTitle: crystal structure of staphylococcus aureus glutamate2 racemase in complex with d-glutamate 5 c2dwuA_ 100.0 29 PDB header:isomerase Chain: A: PDB Molecule:glutamate racemase; PDBTitle: crystal structure of glutamate racemase isoform race1 from bacillus2 anthracis 6 c2gzmB_ 100.0 28 PDB header:isomerase Chain: B: PDB Molecule:glutamate racemase; PDBTitle: crystal structure of the glutamate racemase from bacillus2 anthracis 7 c1zuwA_ 100.0 27 PDB header:isomerase Chain: A: PDB Molecule:glutamate racemase 1; PDBTitle: crystal structure of b.subtilis glutamate racemase (race) with d-glu 8 c2ohoA_ 100.0 29 PDB header:isomerase Chain: A: PDB Molecule:glutamate racemase; PDBTitle: structural basis for glutamate racemase inhibitor 9 c3outC_ 100.0 22 PDB header:isomerase Chain: C: PDB Molecule:glutamate racemase; PDBTitle: crystal structure of glutamate racemase from francisella tularensis2 subsp. tularensis schu s4 in complex with d-glutamate. 10 c2jfzB_ 100.0 26 PDB header:isomerase Chain: B: PDB Molecule:glutamate racemase; PDBTitle: crystal structure of helicobacter pylori glutamate racemase2 in complex with d-glutamate and an inhibitor 11 c1b74A_ 100.0 27 PDB header:isomerase Chain: A: PDB Molecule:glutamate racemase; PDBTitle: glutamate racemase from aquifex pyrophilus 12 c2zskA_ 100.0 18 PDB header:unknown function Chain: A: PDB Molecule:226aa long hypothetical aspartate racemase; PDBTitle: crystal structure of ph1733, an aspartate racemase2 homologue, from pyrococcus horikoshii ot3 13 d1b74a1 100.0 34 Fold:ATC-like Superfamily:Aspartate/glutamate racemase Family:Aspartate/glutamate racemase 14 c3ojcD_ 100.0 18 PDB header:isomerase Chain: D: PDB Molecule:putative aspartate/glutamate racemase; PDBTitle: crystal structure of a putative asp/glu racemase from yersinia pestis 15 c3s81A_ 100.0 17 PDB header:isomerase Chain: A: PDB Molecule:putative aspartate racemase; PDBTitle: crystal structure of putative aspartate racemase from salmonella2 typhimurium 16 c2dx7B_ 100.0 14 PDB header:isomerase Chain: B: PDB Molecule:aspartate racemase; PDBTitle: crystal structure of pyrococcus horikoshii ot3 aspartate racemase2 complex with citric acid 17 d1b74a2 100.0 23 Fold:ATC-like Superfamily:Aspartate/glutamate racemase Family:Aspartate/glutamate racemase 18 c2vlbC_ 100.0 17 PDB header:lyase Chain: C: PDB Molecule:arylmalonate decarboxylase; PDBTitle: structure of unliganded arylmalonate decarboxylase 19 c3qvjB_ 99.9 18 PDB header:isomerase Chain: B: PDB Molecule:putative hydantoin racemase; PDBTitle: allantoin racemase from klebsiella pneumoniae 20 c2eq5D_ 99.9 18 PDB header:isomerase Chain: D: PDB Molecule:228aa long hypothetical hydantoin racemase; PDBTitle: crystal structure of hydantoin racemase from pyrococcus horikoshii ot3 21 c2dgdD_ not modelled 99.8 11 PDB header:lyase Chain: D: PDB Molecule:223aa long hypothetical arylmalonate decarboxylase; PDBTitle: crystal structure of st0656, a function unknown protein from2 sulfolobus tokodaii 22 d1jfla2 not modelled 99.8 16 Fold:ATC-like Superfamily:Aspartate/glutamate racemase Family:Aspartate/glutamate racemase 23 d2dx7a1 not modelled 99.8 14 Fold:ATC-like Superfamily:Aspartate/glutamate racemase Family:Aspartate/glutamate racemase 24 d1jfla1 not modelled 99.1 15 Fold:ATC-like Superfamily:Aspartate/glutamate racemase Family:Aspartate/glutamate racemase 25 c2xecD_ not modelled 98.6 16 PDB header:isomerase Chain: D: PDB Molecule:putative maleate isomerase; PDBTitle: nocardia farcinica maleate cis-trans isomerase bound to2 tris 26 c3dahB_ not modelled 94.4 15 PDB header:transferase Chain: B: PDB Molecule:ribose-phosphate pyrophosphokinase; PDBTitle: 2.3 a crystal structure of ribose-phosphate pyrophosphokinase from2 burkholderia pseudomallei 27 c1dkrB_ not modelled 94.0 15 PDB header:transferase Chain: B: PDB Molecule:phosphoribosyl pyrophosphate synthetase; PDBTitle: crystal structures of bacillus subtilis phosphoribosylpyrophosphate2 synthetase: molecular basis of allosteric inhibition and activation. 28 c2dpyA_ not modelled 93.6 18 PDB header:hydrolase Chain: A: PDB Molecule:flagellum-specific atp synthase; PDBTitle: crystal structure of the flagellar type iii atpase flii 29 d1m3ua_ not modelled 93.4 17 Fold:TIM beta/alpha-barrel Superfamily:Phosphoenolpyruvate/pyruvate domain Family:Ketopantoate hydroxymethyltransferase PanB 30 c3a5dM_ not modelled 93.4 15 PDB header:hydrolase Chain: M: PDB Molecule:v-type atp synthase beta chain; PDBTitle: inter-subunit interaction and quaternary rearrangement2 defined by the central stalk of prokaryotic v1-atpase 31 d1oy0a_ not modelled 91.1 14 Fold:TIM beta/alpha-barrel Superfamily:Phosphoenolpyruvate/pyruvate domain Family:Ketopantoate hydroxymethyltransferase PanB 32 d1skye3 not modelled 91.1 13 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:RecA protein-like (ATPase-domain) 33 c3lp6D_ not modelled 90.7 20 PDB header:lyase Chain: D: PDB Molecule:phosphoribosylaminoimidazole carboxylase catalytic subunit; PDBTitle: crystal structure of rv3275c-e60a from mycobacterium tuberculosis at2 1.7a resolution 34 c3ez4B_ not modelled 87.5 19 PDB header:transferase Chain: B: PDB Molecule:3-methyl-2-oxobutanoate hydroxymethyltransferase; PDBTitle: crystal structure of 3-methyl-2-oxobutanoate2 hydroxymethyltransferase from burkholderia pseudomallei 35 c2pjuD_ not modelled 87.1 14 PDB header:transcription Chain: D: PDB Molecule:propionate catabolism operon regulatory protein; PDBTitle: crystal structure of propionate catabolism operon2 regulatory protein prpr 36 d1wbha1 not modelled 86.5 13 Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:Class I aldolase 37 c1kjjA_ not modelled 85.7 17 PDB header:transferase Chain: A: PDB Molecule:phosphoribosylglycinamide formyltransferase 2; PDBTitle: crystal structure of glycniamide ribonucleotide2 transformylase in complex with mg-atp-gamma-s 38 d1o5oa_ not modelled 84.7 20 Fold:PRTase-like Superfamily:PRTase-like Family:Phosphoribosyltransferases (PRTases) 39 c2q5cA_ not modelled 84.7 16 PDB header:transcription Chain: A: PDB Molecule:ntrc family transcriptional regulator; PDBTitle: crystal structure of ntrc family transcriptional regulator from2 clostridium acetobutylicum 40 c2xd4A_ not modelled 84.6 11 PDB header:ligase Chain: A: PDB Molecule:phosphoribosylamine--glycine ligase; PDBTitle: nucleotide-bound structures of bacillus subtilis glycinamide2 ribonucleotide synthetase 41 d2pjua1 not modelled 82.8 14 Fold:Chelatase-like Superfamily:PrpR receptor domain-like Family:PrpR receptor domain-like 42 c2c61A_ not modelled 82.4 13 PDB header:hydrolase Chain: A: PDB Molecule:a-type atp synthase non-catalytic subunit b; PDBTitle: crystal structure of the non-catalytic b subunit of a-type2 atpase from m. mazei go1 43 c3ouzA_ not modelled 81.9 12 PDB header:ligase Chain: A: PDB Molecule:biotin carboxylase; PDBTitle: crystal structure of biotin carboxylase-adp complex from campylobacter2 jejuni 44 c1fx0B_ not modelled 80.8 14 PDB header:hydrolase Chain: B: PDB Molecule:atp synthase beta chain; PDBTitle: crystal structure of the chloroplast f1-atpase from spinach 45 c2axqA_ not modelled 80.7 16 PDB header:oxidoreductase Chain: A: PDB Molecule:saccharopine dehydrogenase; PDBTitle: apo histidine-tagged saccharopine dehydrogenase (l-glu2 forming) from saccharomyces cerevisiae 46 d1o66a_ not modelled 80.6 14 Fold:TIM beta/alpha-barrel Superfamily:Phosphoenolpyruvate/pyruvate domain Family:Ketopantoate hydroxymethyltransferase PanB 47 d1skyb3 not modelled 79.4 16 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:RecA protein-like (ATPase-domain) 48 c2gr2A_ not modelled 78.2 21 PDB header:oxidoreductase Chain: A: PDB Molecule:ferredoxin reductase; PDBTitle: crystal structure of ferredoxin reductase, bpha4 (oxidized form) 49 c3gkaB_ not modelled 76.7 9 PDB header:oxidoreductase Chain: B: PDB Molecule:n-ethylmaleimide reductase; PDBTitle: crystal structure of n-ethylmaleimidine reductase from2 burkholderia pseudomallei 50 d1cjca2 not modelled 76.6 16 Fold:Nucleotide-binding domain Superfamily:Nucleotide-binding domain Family:N-terminal domain of adrenodoxin reductase-like 51 c3h5lB_ not modelled 76.2 12 PDB header:transport protein Chain: B: PDB Molecule:putative branched-chain amino acid abc PDBTitle: crystal structure of a putative branched-chain amino acid2 abc transporter from silicibacter pomeroyi 52 c3bolB_ not modelled 75.3 22 PDB header:transferase Chain: B: PDB Molecule:5-methyltetrahydrofolate s-homocysteine PDBTitle: cobalamin-dependent methionine synthase (1-566) from2 thermotoga maritima complexed with zn2+ 53 c2jizD_ not modelled 75.3 15 PDB header:hydrolase Chain: D: PDB Molecule:atp synthase subunit beta; PDBTitle: the structure of f1-atpase inhibited by resveratrol. 54 c3noyA_ not modelled 75.0 21 PDB header:oxidoreductase Chain: A: PDB Molecule:4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; PDBTitle: crystal structure of ispg (gcpe) 55 c3hf3A_ not modelled 74.6 13 PDB header:oxidoreductase Chain: A: PDB Molecule:chromate reductase; PDBTitle: old yellow enzyme from thermus scotoductus sa-01 56 c3d2fC_ not modelled 74.3 19 PDB header:chaperone Chain: C: PDB Molecule:heat shock protein homolog sse1; PDBTitle: crystal structure of a complex of sse1p and hsp70 57 c2v7yA_ not modelled 74.2 21 PDB header:chaperone Chain: A: PDB Molecule:chaperone protein dnak; PDBTitle: crystal structure of the molecular chaperone dnak from2 geobacillus kaustophilus hta426 in post-atp hydrolysis3 state 58 d1v9sa1 not modelled 73.7 16 Fold:PRTase-like Superfamily:PRTase-like Family:Phosphoribosyltransferases (PRTases) 59 c2c4kD_ not modelled 73.4 14 PDB header:regulatory protein Chain: D: PDB Molecule:phosphoribosyl pyrophosphate synthetase- PDBTitle: crystal structure of human phosphoribosylpyrophosphate2 synthetase-associated protein 39 (pap39) 60 c1dkgD_ not modelled 72.8 26 PDB header:complex (hsp24/hsp70) Chain: D: PDB Molecule:molecular chaperone dnak; PDBTitle: crystal structure of the nucleotide exchange factor grpe2 bound to the atpase domain of the molecular chaperone dnak 61 c2oblA_ not modelled 72.2 16 PDB header:hydrolase Chain: A: PDB Molecule:escn; PDBTitle: structural and biochemical analysis of a prototypical atpase from the2 type iii secretion system of pathogenic bacteria 62 c3gr7A_ not modelled 72.2 13 PDB header:oxidoreductase Chain: A: PDB Molecule:nadph dehydrogenase; PDBTitle: structure of oye from geobacillus kaustophilus, hexagonal2 crystal form 63 c2ys6A_ not modelled 72.1 12 PDB header:ligase Chain: A: PDB Molecule:phosphoribosylglycinamide synthetase; PDBTitle: crystal structure of gar synthetase from geobacillus kaustophilus 64 c3a5dB_ not modelled 71.8 19 PDB header:hydrolase Chain: B: PDB Molecule:v-type atp synthase alpha chain; PDBTitle: inter-subunit interaction and quaternary rearrangement2 defined by the central stalk of prokaryotic v1-atpase 65 c2w6jD_ not modelled 71.5 15 PDB header:hydrolase Chain: D: PDB Molecule:atp synthase subunit beta, mitochondrial; PDBTitle: low resolution structures of bovine mitochondrial f1-atpase2 during controlled dehydration: hydration state 5. 66 c1skyE_ not modelled 70.0 11 PDB header:atp synthase Chain: E: PDB Molecule:f1-atpase; PDBTitle: crystal structure of the nucleotide free alpha3beta3 sub-complex of2 f1-atpase from the thermophilic bacillus ps3 67 c1kmhA_ not modelled 69.9 17 PDB header:hydrolase Chain: A: PDB Molecule:atpase alpha subunit; PDBTitle: crystal structure of spinach chloroplast f1-atpase2 complexed with tentoxin 68 c2o14A_ not modelled 67.5 20 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein yxim; PDBTitle: x-ray crystal structure of protein yxim_bacsu from bacillus2 subtilis. northeast structural genomics consortium target3 sr595 69 d1fx0b3 not modelled 67.4 12 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:RecA protein-like (ATPase-domain) 70 c2h31A_ not modelled 65.4 17 PDB header:ligase, lyase Chain: A: PDB Molecule:multifunctional protein ade2; PDBTitle: crystal structure of human paics, a bifunctional carboxylase and2 synthetase in purine biosynthesis 71 c1m6iA_ not modelled 64.9 16 PDB header:oxidoreductase Chain: A: PDB Molecule:programmed cell death protein 8; PDBTitle: crystal structure of apoptosis inducing factor (aif) 72 c3zu0A_ not modelled 64.1 15 PDB header:hydrolase Chain: A: PDB Molecule:nad nucleotidase; PDBTitle: structure of haemophilus influenzae nad nucleotidase (nadn) 73 d1vhca_ not modelled 64.0 16 Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:Class I aldolase 74 d1gv4a1 not modelled 63.9 18 Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:FAD/NAD-linked reductases, N-terminal and central domains 75 c1ulzA_ not modelled 63.9 15 PDB header:ligase Chain: A: PDB Molecule:pyruvate carboxylase n-terminal domain; PDBTitle: crystal structure of the biotin carboxylase subunit of pyruvate2 carboxylase 76 c2v3aA_ not modelled 63.8 17 PDB header:oxidoreductase Chain: A: PDB Molecule:rubredoxin reductase; PDBTitle: crystal structure of rubredoxin reductase from pseudomonas2 aeruginosa. 77 c3sg0A_ not modelled 63.5 18 PDB header:signaling protein Chain: A: PDB Molecule:extracellular ligand-binding receptor; PDBTitle: the crystal structure of an extracellular ligand-binding receptor from2 rhodopseudomonas palustris haa2 78 c2h90A_ not modelled 63.3 14 PDB header:oxidoreductase Chain: A: PDB Molecule:xenobiotic reductase a; PDBTitle: xenobiotic reductase a in complex with coumarin 79 c3jz3B_ not modelled 63.1 43 PDB header:transferase Chain: B: PDB Molecule:sensor protein qsec; PDBTitle: structure of the cytoplasmic segment of histidine kinase qsec 80 c3dmpD_ not modelled 62.5 11 PDB header:transferase Chain: D: PDB Molecule:uracil phosphoribosyltransferase; PDBTitle: 2.6 a crystal structure of uracil phosphoribosyltransferase2 from burkholderia pseudomallei 81 c2iswB_ not modelled 62.4 16 PDB header:lyase Chain: B: PDB Molecule:putative fructose-1,6-bisphosphate aldolase; PDBTitle: structure of giardia fructose-1,6-biphosphate aldolase in2 complex with phosphoglycolohydroxamate 82 d1e5qa1 not modelled 62.0 15 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain 83 c3lwzC_ not modelled 60.3 24 PDB header:lyase Chain: C: PDB Molecule:3-dehydroquinate dehydratase; PDBTitle: 1.65 angstrom resolution crystal structure of type ii 3-2 dehydroquinate dehydratase (aroq) from yersinia pestis 84 c3u9sE_ not modelled 59.9 13 PDB header:ligase Chain: E: PDB Molecule:methylcrotonyl-coa carboxylase, alpha-subunit; PDBTitle: crystal structure of p. aeruginosa 3-methylcrotonyl-coa carboxylase2 (mcc) 750 kd holoenzyme, coa complex 85 c2khoA_ not modelled 59.0 25 PDB header:chaperone Chain: A: PDB Molecule:heat shock protein 70; PDBTitle: nmr-rdc / xray structure of e. coli hsp70 (dnak) chaperone2 (1-605) complexed with adp and substrate 86 d1gqoa_ not modelled 59.0 15 Fold:Flavodoxin-like Superfamily:Type II 3-dehydroquinate dehydratase Family:Type II 3-dehydroquinate dehydratase 87 c3lp8A_ not modelled 57.7 13 PDB header:ligase Chain: A: PDB Molecule:phosphoribosylamine-glycine ligase; PDBTitle: crystal structure of phosphoribosylamine-glycine ligase from2 ehrlichia chaffeensis 88 c2ywrA_ not modelled 57.6 18 PDB header:transferase Chain: A: PDB Molecule:phosphoribosylglycinamide formyltransferase; PDBTitle: crystal structure of gar transformylase from aquifex2 aeolicus 89 c2qe7C_ not modelled 56.6 16 PDB header:hydrolase Chain: C: PDB Molecule:atp synthase subunit alpha; PDBTitle: crystal structure of the f1-atpase from the thermoalkaliphilic2 bacterium bacillus sp. ta2.a1 90 c1yqzA_ not modelled 56.4 20 PDB header:oxidoreductase Chain: A: PDB Molecule:coenzyme a disulfide reductase; PDBTitle: structure of coenzyme a-disulfide reductase from2 staphylococcus aureus refined at 1.54 angstrom resolution 91 c2ip4A_ not modelled 56.3 13 PDB header:ligase Chain: A: PDB Molecule:phosphoribosylamine--glycine ligase; PDBTitle: crystal structure of glycinamide ribonucleotide synthetase from2 thermus thermophilus hb8 92 c3bg5C_ not modelled 56.1 13 PDB header:ligase Chain: C: PDB Molecule:pyruvate carboxylase; PDBTitle: crystal structure of staphylococcus aureus pyruvate2 carboxylase 93 c3n6rK_ not modelled 55.9 9 PDB header:ligase Chain: K: PDB Molecule:propionyl-coa carboxylase, alpha subunit; PDBTitle: crystal structure of the holoenzyme of propionyl-coa carboxylase (pcc) 94 c2vpqA_ not modelled 54.9 9 PDB header:ligase Chain: A: PDB Molecule:acetyl-coa carboxylase; PDBTitle: crystal structure of biotin carboxylase from s. aureus2 complexed with amppnp 95 d1jkxa_ not modelled 54.8 19 Fold:Formyltransferase Superfamily:Formyltransferase Family:Formyltransferase 96 c1h6dL_ not modelled 54.4 7 PDB header:protein translocation Chain: L: PDB Molecule:precursor form of glucose-fructose PDBTitle: oxidized precursor form of glucose-fructose oxidoreductase2 from zymomonas mobilis complexed with glycerol 97 c1ofgF_ not modelled 54.4 7 PDB header:oxidoreductase Chain: F: PDB Molecule:glucose-fructose oxidoreductase; PDBTitle: glucose-fructose oxidoreductase 98 d1m6ia1 not modelled 54.4 16 Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:FAD/NAD-linked reductases, N-terminal and central domains 99 c3l0oB_ not modelled 53.6 15 PDB header:hydrolase Chain: B: PDB Molecule:transcription termination factor rho; PDBTitle: structure of rna-free rho transcription termination factor from2 thermotoga maritima 100 c3lpnB_ not modelled 53.5 5 PDB header:transferase Chain: B: PDB Molecule:ribose-phosphate pyrophosphokinase; PDBTitle: crystal structure of the phosphoribosylpyrophosphate (prpp) synthetase2 from thermoplasma volcanium in complex with an atp analog (ampcpp). 101 d1ujqa_ not modelled 53.3 19 Fold:TIM beta/alpha-barrel Superfamily:Phosphoenolpyruvate/pyruvate domain Family:Phosphoenolpyruvate mutase/Isocitrate lyase-like 102 c3cr8C_ not modelled 53.2 13 PDB header:transferase Chain: C: PDB Molecule:sulfate adenylyltranferase, adenylylsulfate PDBTitle: hexameric aps kinase from thiobacillus denitrificans 103 d2ffca1 not modelled 53.1 12 Fold:TIM beta/alpha-barrel Superfamily:Ribulose-phoshate binding barrel Family:Decarboxylase 104 c1keeH_ not modelled 52.8 16 PDB header:ligase Chain: H: PDB Molecule:carbamoyl-phosphate synthetase small chain; PDBTitle: inactivation of the amidotransferase activity of carbamoyl phosphate2 synthetase by the antibiotic acivicin 105 c3lxdA_ not modelled 52.2 19 PDB header:oxidoreductase Chain: A: PDB Molecule:fad-dependent pyridine nucleotide-disulphide PDBTitle: crystal structure of ferredoxin reductase arr from novosphingobium2 aromaticivorans 106 d1uqra_ not modelled 52.2 16 Fold:Flavodoxin-like Superfamily:Type II 3-dehydroquinate dehydratase Family:Type II 3-dehydroquinate dehydratase 107 c2xdqA_ not modelled 51.3 13 PDB header:oxidoreductase Chain: A: PDB Molecule:light-independent protochlorophyllide reductase subunit n; PDBTitle: dark operative protochlorophyllide oxidoreductase (chln-2 chlb)2 complex 108 d1dkgd2 not modelled 51.1 26 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Actin/HSP70 109 c3cpqB_ not modelled 50.9 16 PDB header:ribosomal protein Chain: B: PDB Molecule:50s ribosomal protein l30e; PDBTitle: crystal structure of l30e a ribosomal protein from2 methanocaldococcus jannaschii dsm2661 (mj1044) 110 c2wjxA_ not modelled 50.2 12 PDB header:transport protein Chain: A: PDB Molecule:glutamate receptor 2; PDBTitle: crystal structure of the human ionotropic glutamate2 receptor glur2 atd region at 4.1 a resolution 111 d1gvfa_ not modelled 49.9 28 Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:Class II FBP aldolase 112 c1gv4A_ not modelled 49.6 15 PDB header:oxidoreductase Chain: A: PDB Molecule:programed cell death protein 8; PDBTitle: murine apoptosis-inducing factor (aif) 113 c3tsuA_ not modelled 49.5 14 PDB header:transferase Chain: A: PDB Molecule:transcriptional regulatory protein; PDBTitle: crystal structure of e. coli hypf with amp-pnp and carbamoyl phosphate 114 d1fmta2 not modelled 49.3 12 Fold:Formyltransferase Superfamily:Formyltransferase Family:Formyltransferase 115 c3dcjA_ not modelled 49.2 22 PDB header:transferase Chain: A: PDB Molecule:probable 5'-phosphoribosylglycinamide PDBTitle: crystal structure of glycinamide formyltransferase (purn)2 from mycobacterium tuberculosis in complex with 5-methyl-5,3 6,7,8-tetrahydrofolic acid derivative 116 c2qrvA_ not modelled 49.0 25 PDB header:transferase/transferase regulator Chain: A: PDB Molecule:dna (cytosine-5)-methyltransferase 3a; PDBTitle: structure of dnmt3a-dnmt3l c-terminal domain complex 117 d1xtta1 not modelled 48.9 8 Fold:PRTase-like Superfamily:PRTase-like Family:Phosphoribosyltransferases (PRTases) 118 c3kwlA_ not modelled 48.3 10 PDB header:unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of a hypothetical protein from helicobacter pylori 119 d1t0kb_ not modelled 48.2 16 Fold:Bacillus chorismate mutase-like Superfamily:L30e-like Family:L30e/L7ae ribosomal proteins 120 c2dzdB_ not modelled 48.1 10 PDB header:ligase Chain: B: PDB Molecule:pyruvate carboxylase; PDBTitle: crystal structure of the biotin carboxylase domain of2 pyruvate carboxylase

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0