PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c2jfoB_

Fold library id	PDB Header	Molecule	Title
c2jfoB_	PDB header: isomerase	Chain: B: PDB Molecule: glutamate racemase;	PDBTitle: crystal structure of enterococcus faecalis glutamate2 racemase in complex with d- and l-glutamate

Links to external resources
Added to library: Tue Mar 16 13:16:54 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence S N Q E A I G L I D S G V G G L T V L K E A L K Q L P N E R L I Y L G D T A R C P Y G P R P A E Q V V Q F T W E M A D F L L K K R I K M L V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T S
S S S T T
T T
T T T
T T S
T T T
S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence I A C N T A T A V A L E E I K A A L P I P V V G V I L P G A R A A V K V T K N N K I G V I G T L G T I K S A S Y E I A I K S K A P A I E V T

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S
S S
S S S
T T T T
T T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence S L A C P K F V P I V E S N Q Y R S S V A K K I V A E T L Q A L Q L K G L D T L I L G C T H Y P L L R P V I Q N V M G S H V T L I D S G A E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T T T
S S S T T G G G G T
S
S T T G G G G
T T

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . . . . . . . . 260 . . . . . . .

Sequence T V G E V S M L L D Y F D I A H T P E A P T Q P H E F Y T T G S A K M F E E I A S S W L G I E N L K A Q Q I H L G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
S S S
S S
S S

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	S	N	Q	E	A	I	G	L	I	D	S	G	V	G	G	L	T	V	L	K	E	A	L	K	Q	L	P	N	E	R	L	I	Y	L	G	D	T	A	R	C	P	Y	G	P	R	P	A	E	Q	V	V	Q	F	T	W	E	M	A	D	F	L	L	K	K	R	I	K	M	L	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		T	T	S							S	S	S	T	T												T	T									T	T	T				T	T	S																		T	T	T		S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	I	A	C	N	T	A	T	A	V	A	L	E	E	I	K	A	A	L	P	I	P	V	V	G	V	I	L	P	G	A	R	A	A	V	K	V	T	K	N	N	K	I	G	V	I	G	T	L	G	T	I	K	S	A	S	Y	E	I	A	I	K	S	K	A	P	A	I	E	V	T
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																			S	S					S	S												S	S	S													T	T								T	T		T	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	S	L	A	C	P	K	F	V	P	I	V	E	S	N	Q	Y	R	S	S	V	A	K	K	I	V	A	E	T	L	Q	A	L	Q	L	K	G	L	D	T	L	I	L	G	C	T	H	Y	P	L	L	R	P	V	I	Q	N	V	M	G	S	H	V	T	L	I	D	S	G	A	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)					T	T							T	T		S	S	S											T	T	G	G	G	G	T			S						S	T	T	G	G	G	G										T	T
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.
Sequence	T	V	G	E	V	S	M	L	L	D	Y	F	D	I	A	H	T	P	E	A	P	T	Q	P	H	E	F	Y	T	T	G	S	A	K	M	F	E	E	I	A	S	S	W	L	G	I	E	N	L	K	A	Q	Q	I	H	L	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)													T					S	S	S										S	S																S	S