PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c2jfnA_

Fold library id	PDB Header	Molecule	Title
c2jfnA_	PDB header: isomerase	Chain: A: PDB Molecule: glutamate racemase;	PDBTitle: crystal structure of escherichia coli glutamate racemase2 in complex with l-glutamate and activator udp-murnac-ala

Links to external resources
Added to library: Tue Mar 16 13:56:54 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence P R P T V L V F D S G V G G L S V Y D E I R H L L P D L H Y I Y A F D N V A F P Y G E K S E A F I V E R V V A I V T A V Q E R Y P L A L A V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S S T S T T S
T T T
T T T S
S
S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence V A C N T A S T V S L P A L R E K F D F P V V G V V P A I K P A A R L T A N G I V G L L A T R G T V K R S Y T H E L I A R F A N E C Q I E M

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S
S S S
T T G G G
S
T T S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence L G S A E M V E L A E A K L H G E D V S L D A L K R I L R P W L R M K E P P D T V V L G C T H F P L L Q E E L L Q V L P E G T R L V D S G A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T
T T
S S
S
S T T G G G G S
T T
S

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . . . . . . . . 260 . . . . . . .

Sequence A I A R R T A W L L E H E A P D A K S A D A N I A F C M A M T P G A E Q L L P V L Q R Y G F E T L E K L A V L G E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
S
S
S S
T T T T

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

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Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	P	R	P	T	V	L	V	F	D	S	G	V	G	G	L	S	V	Y	D	E	I	R	H	L	L	P	D	L	H	Y	I	Y	A	F	D	N	V	A	F	P	Y	G	E	K	S	E	A	F	I	V	E	R	V	V	A	I	V	T	A	V	Q	E	R	Y	P	L	A	L	A	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)										S	S	S	T												S	T	T	S								T	T	T			T	T	T	S																				S			S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	V	A	C	N	T	A	S	T	V	S	L	P	A	L	R	E	K	F	D	F	P	V	V	G	V	V	P	A	I	K	P	A	A	R	L	T	A	N	G	I	V	G	L	L	A	T	R	G	T	V	K	R	S	Y	T	H	E	L	I	A	R	F	A	N	E	C	Q	I	E	M
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																			S	S																	S	S	S								T	T	G	G	G											S		T	T	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	L	G	S	A	E	M	V	E	L	A	E	A	K	L	H	G	E	D	V	S	L	D	A	L	K	R	I	L	R	P	W	L	R	M	K	E	P	P	D	T	V	V	L	G	C	T	H	F	P	L	L	Q	E	E	L	L	Q	V	L	P	E	G	T	R	L	V	D	S	G	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																T												T					T		S	S			S						S	T	T	G	G	G	G								S		T	T						S
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.
Sequence	A	I	A	R	R	T	A	W	L	L	E	H	E	A	P	D	A	K	S	A	D	A	N	I	A	F	C	M	A	M	T	P	G	A	E	Q	L	L	P	V	L	Q	R	Y	G	F	E	T	L	E	K	L	A	V	L	G	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)													T			S					S							S	S							T	T							T	T