PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c3ojcD_

Fold library id	PDB Header	Molecule	Title
c3ojcD_	PDB header: isomerase	Chain: D: PDB Molecule: putative aspartate/glutamate racemase;	PDBTitle: crystal structure of a putative asp/glu racemase from yersinia pestis

Links to external resources
Added to library: Sat Sep 18 08:53:54 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence X K I L G L I G G X S W E S T I P Y Y R X I N Q H V K A Q L G G L H S A K I I L Y S V D F H E I E Q L Q A K G D W Q T A A Q L L S N A A I S

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
T T
T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence L K H A G A E V I V V C T N T X H K V A D D I E A A C G L P L L H I A D A T A V Q I K Q Q G I D K I G L L G T R Y T X E Q G F Y R G R L T E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
S S S G G G G G T S
B
T T
S
S T T T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence K H G I E V I T P D D T D R E A V N R I I Y E E L C L G I I S E T S R D A Y R R V I K K L E A Q G V Q G I I F G C T E I T L L V N A Q D A S

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T G G G T
T T
S
S T
G G G
S

. . . . . . . . . 220 . . . . . . . . . 230

Sequence V P V F D T T A I H A S A A A D Y A L Q

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	X	K	I	L	G	L	I	G	G	X	S	W	E	S	T	I	P	Y	Y	R	X	I	N	Q	H	V	K	A	Q	L	G	G	L	H	S	A	K	I	I	L	Y	S	V	D	F	H	E	I	E	Q	L	Q	A	K	G	D	W	Q	T	A	A	Q	L	L	S	N	A	A	I	S
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)										T	T																					T	T																					T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	L	K	H	A	G	A	E	V	I	V	V	C	T	N	T	X	H	K	V	A	D	D	I	E	A	A	C	G	L	P	L	L	H	I	A	D	A	T	A	V	Q	I	K	Q	Q	G	I	D	K	I	G	L	L	G	T	R	Y	T	X	E	Q	G	F	Y	R	G	R	L	T	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)					T							S	S	S	G	G	G	G	G									T	S		B														T	T								S							S	T	T	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	K	H	G	I	E	V	I	T	P	D	D	T	D	R	E	A	V	N	R	I	I	Y	E	E	L	C	L	G	I	I	S	E	T	S	R	D	A	Y	R	R	V	I	K	K	L	E	A	Q	G	V	Q	G	I	I	F	G	C	T	E	I	T	L	L	V	N	A	Q	D	A	S
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																								T	G	G	G	T																				T	T		S						S	T								G	G	G		S
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230
Sequence	V	P	V	F	D	T	T	A	I	H	A	S	A	A	A	D	Y	A	L	Q
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S