PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c2jfzB_

Fold library id	PDB Header	Molecule	Title
c2jfzB_	PDB header: isomerase	Chain: B: PDB Molecule: glutamate racemase;	PDBTitle: crystal structure of helicobacter pylori glutamate racemase2 in complex with d-glutamate and an inhibitor

Links to external resources
Added to library: Tue Mar 16 13:20:03 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence M K I G V F D S G V G G F S V L K S L L K A R L F D E I I Y Y G D S A R V P Y G T K D P T T I K Q F G L E A L D F F K P H E I E L L I V A C

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S G G G T T
S
T T T
T T S
G G G T
S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence N T A S A L A L E E M Q K Y S K I P I V G V I E P S I L A I K R Q V E D K N A P I L V L G T K A T I Q S N A Y D N A L K Q Q G Y L N I S H L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
S S
S S
T T S
T T T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence A T S L F V P L I E E S I L E G E L L E T C M H Y Y F T P L E I L P E V I I L G C T H F P L I A Q K I E G Y F M G H F A L P T P P L L I H S

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T T T
S S T T
S
S S T T G G G G S
S S

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . .

Sequence G D A I V E Y L Q Q K Y A L P K V E F H A S G D V I W L E R Q A K E W L K L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
S S
T

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	M	K	I	G	V	F	D	S	G	V	G	G	F	S	V	L	K	S	L	L	K	A	R	L	F	D	E	I	I	Y	Y	G	D	S	A	R	V	P	Y	G	T	K	D	P	T	T	I	K	Q	F	G	L	E	A	L	D	F	F	K	P	H	E	I	E	L	L	I	V	A	C
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)								S	S	G	G	G										T	T			S								T	T	T				T	T	S																	G	G	G	T		S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	N	T	A	S	A	L	A	L	E	E	M	Q	K	Y	S	K	I	P	I	V	G	V	I	E	P	S	I	L	A	I	K	R	Q	V	E	D	K	N	A	P	I	L	V	L	G	T	K	A	T	I	Q	S	N	A	Y	D	N	A	L	K	Q	Q	G	Y	L	N	I	S	H	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)							T							T		S	S					S	S														T	T	S														T									T	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	A	T	S	L	F	V	P	L	I	E	E	S	I	L	E	G	E	L	L	E	T	C	M	H	Y	Y	F	T	P	L	E	I	L	P	E	V	I	I	L	G	C	T	H	F	P	L	I	A	Q	K	I	E	G	Y	F	M	G	H	F	A	L	P	T	P	P	L	L	I	H	S
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			T	T							T	T			S	S												T	T			S			S						S	T	T	G	G	G	G												S			S	S
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.
Sequence	G	D	A	I	V	E	Y	L	Q	Q	K	Y	A	L	P	K	V	E	F	H	A	S	G	D	V	I	W	L	E	R	Q	A	K	E	W	L	K	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)												T										S	S													T