Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP0AES2
DateThu Jan 5 11:24:05 GMT 2012
Unique Job IDcf85a825e773907e

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template c1ec8B_
Top template information
PDB header:lyase
Chain: B: PDB Molecule:glucarate dehydratase;
PDBTitle: e. coli glucarate dehydratase bound to product 2,3-2 dihydroxy-5-oxo-hexanedioate
Confidence and coverage
Confidence:100.0% Coverage: 99%
442 residues ( 99% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MSSQFTTPVVTEMQVIPVAGHDSMLMNLSGAHAPFFTRNIVIIKDNSGHTGVGEIPGGEK
Secondary structure 































SS confidence 



























































Disorder  ?????????












??

?
































Disorder confidence 



























































 
   .........70.........80.........90.........100.........110.........120
Sequence  IRKTLEDAIPLVVGKTLGEYKNVLTLVRNTFADRDAGGRGLQTFDLRTTIHVVTGIEAAM
Secondary structure 
















SS confidence 



























































Disorder 































??


?



??????











Disorder confidence 



























































 
   .........130.........140.........150.........160.........170.........180
Sequence  LDLLGQHLGVNVASLLGDGQQRSEVEMLGYLFFVGNRKATPLPYQSQPDDSCDWYRLRHE
Secondary structure 



































SS confidence 



























































Disorder 



























































Disorder confidence 



























































 
   .........190.........200.........210.........220.........230.........240
Sequence  EAMTPDAVVRLAEAAYEKYGFNDFKLKGGVLAGEEEAESIVALAQRFPQARITLDPNGAW
Secondary structure 





















SS confidence 



























































Disorder 



























































Disorder confidence 



























































 
   .........250.........260.........270.........280.........290.........300
Sequence  SLNEAIKIGKYLKGSLAYAEDPCGAEQGFSGREVMAEFRRATGLPTATNMIATDWRQMGH
Secondary structure 

























SS confidence 



























































Disorder 



























































Disorder confidence 



























































 
   .........310.........320.........330.........340.........350.........360
Sequence  TLSLQSVDIPLADPHFWTMQGSVRVAQMCHEFGLTWGSHSNNHFDISLAMFTHVAAAAPG
Secondary structure 



















SS confidence 



























































Disorder 



























































Disorder confidence 



























































 
   .........370.........380.........390.........400.........410.........420
Sequence  KITAIDTHWIWQEGNQRLTKEPFEIKGGLVQVPEKPGLGVEIDMDQVMKAHELYQKHGLG
Secondary structure 



































SS confidence 



























































Disorder 



























































Disorder confidence 



























































 
   .........430.........440......
Sequence  ARDDAMGMQYLIPGWTFDNKRPCMVR
Secondary structure 



















SS confidence 

























Disorder 
?
















???????
Disorder confidence 

























 

Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 1ec8 chain B

3D model

Region: 5 - 446
Aligned: 442
Modelled: 442
Confidence: 100.0%
Identity: 100%
PDB header:lyase
Chain: B: PDB Molecule:glucarate dehydratase;
PDBTitle: e. coli glucarate dehydratase bound to product 2,3-2 dihydroxy-5-oxo-hexanedioate

Phyre2

PDB 3nxl chain D

3D model

Region: 7 - 444
Aligned: 423
Modelled: 423
Confidence: 100.0%
Identity: 65%
PDB header:lyase
Chain: D: PDB Molecule:glucarate dehydratase;
PDBTitle: crystal structure of glucarate dehydratase from burkholderia cepacia2 complexed with magnesium

Phyre2

PDB 3n6j chain A

3D model

Region: 6 - 446
Aligned: 441
Modelled: 441
Confidence: 100.0%
Identity: 57%
PDB header:isomerase
Chain: A: PDB Molecule:mandelate racemase/muconate lactonizing protein;
PDBTitle: crystal structure of mandelate racemase/muconate lactonizing protein2 from actinobacillus succinogenes 130z

Phyre2

PDB 3mzn chain A

3D model

Region: 8 - 445
Aligned: 437
Modelled: 438
Confidence: 100.0%
Identity: 59%
PDB header:lyase
Chain: A: PDB Molecule:glucarate dehydratase;
PDBTitle: crystal structure of probable glucarate dehydratase from2 chromohalobacter salexigens dsm 3043

Phyre2

PDB 2nql chain B

3D model

Region: 6 - 413
Aligned: 363
Modelled: 375
Confidence: 100.0%
Identity: 22%
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:isomerase/lactonizing enzyme;
PDBTitle: crystal structure of a member of the enolase superfamily from2 agrobacterium tumefaciens

Phyre2

PDB 2pp1 chain C

3D model

Region: 2 - 418
Aligned: 363
Modelled: 391
Confidence: 100.0%
Identity: 20%
PDB header:lyase
Chain: C: PDB Molecule:l-talarate/galactarate dehydratase;
PDBTitle: crystal structure of l-talarate/galactarate dehydratase from2 salmonella typhimurium lt2 liganded with mg and l-lyxarohydroxamate

Phyre2

PDB 2pgw chain C

3D model

Region: 9 - 417
Aligned: 366
Modelled: 380
Confidence: 100.0%
Identity: 22%
PDB header:isomerase
Chain: C: PDB Molecule:muconate cycloisomerase;
PDBTitle: crystal structure of a putative muconate cycloisomerase from2 sinorhizobium meliloti 1021

Phyre2

PDB 1jdf chain A domain 1

3D model

Region: 139 - 446
Aligned: 308
Modelled: 308
Confidence: 100.0%
Identity: 100%
Fold: TIM beta/alpha-barrel
Superfamily: Enolase C-terminal domain-like
Family: D-glucarate dehydratase-like

Phyre2

PDB 2oo6 chain A

3D model

Region: 9 - 419
Aligned: 361
Modelled: 383
Confidence: 100.0%
Identity: 21%
PDB header:isomerase
Chain: A: PDB Molecule:putative l-alanine-dl-glutamate epimerase;
PDBTitle: crystal structure of putative l-alanine-dl-glutamate epimerase from2 burkholderia xenovorans strain lb400

Phyre2

PDB 3tji chain A

3D model

Region: 6 - 417
Aligned: 352
Modelled: 370
Confidence: 100.0%
Identity: 20%
PDB header:lyase
Chain: A: PDB Molecule:mandelate racemase/muconate lactonizing enzyme, n-terminal
PDBTitle: crystal structure of an enolase from enterobacter sp. 638 (efi target2 efi-501662) with bound mg

Phyre2

PDB 2qgy chain A

3D model

Region: 6 - 410
Aligned: 357
Modelled: 379
Confidence: 100.0%
Identity: 15%
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:enolase from the environmental genome shotgun
PDBTitle: crystal structure of an enolase from the environmental2 genome shotgun sequencing of the sargasso sea

Phyre2

PDB 2hxt chain A

3D model

Region: 10 - 410
Aligned: 392
Modelled: 392
Confidence: 100.0%
Identity: 15%
PDB header:unknown function
Chain: A: PDB Molecule:l-fuconate dehydratase;
PDBTitle: crystal structure of l-fuconate dehydratase from xanthomonas2 campestris liganded with mg++ and d-erythronohydroxamate

Phyre2

PDB 2o56 chain D

3D model

Region: 9 - 410
Aligned: 358
Modelled: 365
Confidence: 100.0%
Identity: 20%
PDB header:structural genomics, unknown function
Chain: D: PDB Molecule:putative mandelate racemase;
PDBTitle: crystal structure of a member of the enolase superfamily from2 salmonella typhimurium

Phyre2

PDB 2chr chain A

3D model

Region: 9 - 413
Aligned: 354
Modelled: 362
Confidence: 100.0%
Identity: 20%
PDB header:isomerase
Chain: A: PDB Molecule:chloromuconate cycloisomerase;
PDBTitle: a re-evaluation of the crystal structure of chloromuconate2 cycloisomerase

Phyre2

PDB 2ox4 chain E

3D model

Region: 9 - 410
Aligned: 358
Modelled: 373
Confidence: 100.0%
Identity: 19%
PDB header:isomerase
Chain: E: PDB Molecule:putative mandelate racemase;
PDBTitle: crystal structure of putative dehydratase from zymomonas mobilis zm4

Phyre2

PDB 3t6c chain B

3D model

Region: 9 - 430
Aligned: 358
Modelled: 379
Confidence: 100.0%
Identity: 21%
PDB header:lyase
Chain: B: PDB Molecule:putative mand family dehydratase;
PDBTitle: crystal structure of an enolase from pantoea ananatis (efi target efi-2 501676) with bound d-gluconate and mg

Phyre2

PDB 3rcy chain C

3D model

Region: 9 - 436
Aligned: 375
Modelled: 395
Confidence: 100.0%
Identity: 22%
PDB header:isomerase
Chain: C: PDB Molecule:mandelate racemase/muconate lactonizing enzyme-like
PDBTitle: crystal structure of mandelate racemase/muconate lactonizing enzyme-2 like protein from roseovarius sp. tm1035

Phyre2

PDB 2gl5 chain A

3D model

Region: 9 - 410
Aligned: 362
Modelled: 383
Confidence: 100.0%
Identity: 21%
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:putative dehydratase protein;
PDBTitle: crystal structure of putative dehydratase from salmonella thyphimurium

Phyre2

PDB 3rr1 chain B

3D model

Region: 9 - 428
Aligned: 355
Modelled: 375
Confidence: 100.0%
Identity: 23%
PDB header:lyase
Chain: B: PDB Molecule:putative d-galactonate dehydratase;
PDBTitle: crystal structure of enolase prk14017 (target efi-500653) from2 ralstonia pickettii 12j

Phyre2

PDB 3thu chain C

3D model

Region: 6 - 426
Aligned: 360
Modelled: 378
Confidence: 100.0%
Identity: 21%
PDB header:lyase
Chain: C: PDB Molecule:mandelate racemase / muconate lactonizing enzyme family
PDBTitle: crystal structure of an enolase from sphingomonas sp. ska58 (efi2 target efi-501683) with bound mg

Phyre2
1

c1ec8B_
2

c3nxlD_
3

c3n6jA_
4

c3mznA_
5

c2nqlB_
6

c2pp1C_
7

c2pgwC_
8

d1jdfa1
9

c2oo6A_
10

c3tjiA_
11

c2qgyA_
12

c2hxtA_
13

c2o56D_
14

c2chrA_
15

c2ox4E_
16

c3t6cB_
17

c3rcyC_
18

c2gl5A_
19

c3rr1B_
20

c3thuC_
21



22



23



24



25



26



27



28



29



30



31



32



33



34



35



36



37



38



39



40



41



42



43



44



45



46



47



48



49



50



51



52



53



54



55



56



57



58



59



60



61



62



63



64



65



66



67



68



69



70



71



72



73



74



75



76



77



78



79



80



81



82



83



84



85



86



87



88



89



90



91



92



93



94



95



96



97



98



99



100



101



102



103



104



105



106



107



108



109



110



111



112



113



114



115



116



117



118



119



120



121



122



123



124



125



126



127



128



129



130



131



132



133



134



135



136



137



138



139



140



141



142



143



144



145



146



147



148



149



150



151



152



153



154



155



156



157



158



159



160



161



162



163



164



165



166



167



168



169



170



171



172



173



174



175



176



177



178



179



180



181



182



183



184



185



186



187



188



189



190



191



192



193



194



195



196



197



198



199



200



201



202



203



204



205



206



207



208



209



210



211



212



213



214



215



216



217



218



219



220



221



222



223



224



225



226



227



228



229



230



231



232



233



234



235



236



237



238



239



240



241



242



243



244



245



246



247



248



249



250



251



252



253



254



255



256



257



258



259



260



261



262



263



264



265



266



267



268



269



270



271



272



273



274



275



276



277



278



279



280



281



282



283



284



285



286



287



288



289



290



291



292



293



294



295



296



297



298



299



300



301



302



303



304



305



306



307



308



309



310



311



312



313



314



315



316



317



318



319



320



321



322



323



324



325



326



327



328



329



330



331



332



333



334



335



336



337



338



339



340



341



342



343



344



345



346



347



348



349



350



351



352



353



354



355



356



357



358



359



360



361



362






Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c1ec8B_



100.0 100 PDB header:lyase
Chain: B: PDB Molecule:glucarate dehydratase;
PDBTitle: e. coli glucarate dehydratase bound to product 2,3-2 dihydroxy-5-oxo-hexanedioate
2c3nxlD_



100.0 65 PDB header:lyase
Chain: D: PDB Molecule:glucarate dehydratase;
PDBTitle: crystal structure of glucarate dehydratase from burkholderia cepacia2 complexed with magnesium
3c3n6jA_



100.0 57 PDB header:isomerase
Chain: A: PDB Molecule:mandelate racemase/muconate lactonizing protein;
PDBTitle: crystal structure of mandelate racemase/muconate lactonizing protein2 from actinobacillus succinogenes 130z
4c3mznA_



100.0 59 PDB header:lyase
Chain: A: PDB Molecule:glucarate dehydratase;
PDBTitle: crystal structure of probable glucarate dehydratase from2 chromohalobacter salexigens dsm 3043
5c2nqlB_



100.0 22 PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:isomerase/lactonizing enzyme;
PDBTitle: crystal structure of a member of the enolase superfamily from2 agrobacterium tumefaciens
6c2pp1C_



100.0 20 PDB header:lyase
Chain: C: PDB Molecule:l-talarate/galactarate dehydratase;
PDBTitle: crystal structure of l-talarate/galactarate dehydratase from2 salmonella typhimurium lt2 liganded with mg and l-lyxarohydroxamate
7c2pgwC_



100.0 22 PDB header:isomerase
Chain: C: PDB Molecule:muconate cycloisomerase;
PDBTitle: crystal structure of a putative muconate cycloisomerase from2 sinorhizobium meliloti 1021
8d1jdfa1



100.0 100 Fold:TIM beta/alpha-barrel
Superfamily:Enolase C-terminal domain-like
Family:D-glucarate dehydratase-like
9c2oo6A_



100.0 21 PDB header:isomerase
Chain: A: PDB Molecule:putative l-alanine-dl-glutamate epimerase;
PDBTitle: crystal structure of putative l-alanine-dl-glutamate epimerase from2 burkholderia xenovorans strain lb400
10c3tjiA_



100.0 20 PDB header:lyase
Chain: A: PDB Molecule:mandelate racemase/muconate lactonizing enzyme, n-terminal
PDBTitle: crystal structure of an enolase from enterobacter sp. 638 (efi target2 efi-501662) with bound mg
11c2qgyA_



100.0 15 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:enolase from the environmental genome shotgun
PDBTitle: crystal structure of an enolase from the environmental2 genome shotgun sequencing of the sargasso sea
12c2hxtA_



100.0 15 PDB header:unknown function
Chain: A: PDB Molecule:l-fuconate dehydratase;
PDBTitle: crystal structure of l-fuconate dehydratase from xanthomonas2 campestris liganded with mg++ and d-erythronohydroxamate
13c2o56D_



100.0 20 PDB header:structural genomics, unknown function
Chain: D: PDB Molecule:putative mandelate racemase;
PDBTitle: crystal structure of a member of the enolase superfamily from2 salmonella typhimurium
14c2chrA_



100.0 20 PDB header:isomerase
Chain: A: PDB Molecule:chloromuconate cycloisomerase;
PDBTitle: a re-evaluation of the crystal structure of chloromuconate2 cycloisomerase
15c2ox4E_



100.0 19 PDB header:isomerase
Chain: E: PDB Molecule:putative mandelate racemase;
PDBTitle: crystal structure of putative dehydratase from zymomonas mobilis zm4
16c3t6cB_



100.0 21 PDB header:lyase
Chain: B: PDB Molecule:putative mand family dehydratase;
PDBTitle: crystal structure of an enolase from pantoea ananatis (efi target efi-2 501676) with bound d-gluconate and mg
17c3rcyC_



100.0 22 PDB header:isomerase
Chain: C: PDB Molecule:mandelate racemase/muconate lactonizing enzyme-like
PDBTitle: crystal structure of mandelate racemase/muconate lactonizing enzyme-2 like protein from roseovarius sp. tm1035
18c2gl5A_



100.0 21 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:putative dehydratase protein;
PDBTitle: crystal structure of putative dehydratase from salmonella thyphimurium
19c3rr1B_



100.0 23 PDB header:lyase
Chain: B: PDB Molecule:putative d-galactonate dehydratase;
PDBTitle: crystal structure of enolase prk14017 (target efi-500653) from2 ralstonia pickettii 12j
20c3thuC_



100.0 21 PDB header:lyase
Chain: C: PDB Molecule:mandelate racemase / muconate lactonizing enzyme family
PDBTitle: crystal structure of an enolase from sphingomonas sp. ska58 (efi2 target efi-501683) with bound mg
21c3i6eA_



not modelled 100.0 21 PDB header:isomerase
Chain: A: PDB Molecule:muconate cycloisomerase i;
PDBTitle: crystal structure of muconate lactonizing enzyme from2 ruegeria pomeroyi.
22c1nu5A_



not modelled 100.0 21 PDB header:isomerase
Chain: A: PDB Molecule:chloromuconate cycloisomerase;
PDBTitle: crystal structure of pseudomonas sp. p51 chloromuconate lactonizing2 enzyme
23c3h12B_



not modelled 100.0 23 PDB header:isomerase
Chain: B: PDB Molecule:mandelate racemase;
PDBTitle: crystal structure of putative mandelate racemase from bordetella2 bronchiseptica rb50
24c1rvkA_



not modelled 100.0 17 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:isomerase/lactonizing enzyme;
PDBTitle: crystal structure of enolase agr_l_2751 from agrobacterium tumefaciens
25c3dg7B_



not modelled 100.0 23 PDB header:isomerase
Chain: B: PDB Molecule:muconate cycloisomerase;
PDBTitle: crystal structure of muconate lactonizing enzyme from mucobacterium2 smegmatis complexed with muconolactone
26c3my9A_



not modelled 100.0 22 PDB header:isomerase
Chain: A: PDB Molecule:muconate cycloisomerase;
PDBTitle: crystal structure of a muconate cycloisomerase from azorhizobium2 caulinodans
27c2qddA_



not modelled 100.0 20 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:mandelate racemase/muconate lactonizing enzyme;
PDBTitle: crystal structure of a member of enolase superfamily from roseovarius2 nubinhibens ism
28c2oqhD_



not modelled 100.0 26 PDB header:isomerase
Chain: D: PDB Molecule:putative isomerase;
PDBTitle: crystal structure of an isomerase from streptomyces coelicolor a3(2)
29c2ps2A_



not modelled 100.0 21 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:putative mandelate racemase/muconate lactonizing
PDBTitle: crystal structure of putative mandelate racemase/muconate2 lactonizing enzyme from aspergillus oryzae
30c2qjjC_



not modelled 100.0 20 PDB header:lyase
Chain: C: PDB Molecule:mandelate racemase/muconate lactonizing enzyme;
PDBTitle: crystal structure of d-mannonate dehydratase from novosphingobium2 aromaticivorans
31c3fv9D_



not modelled 100.0 19 PDB header:hydrolase
Chain: D: PDB Molecule:mandelate racemase/muconate lactonizing enzyme;
PDBTitle: crystal structure of putative mandelate racemase/muconatelactonizing2 enzyme from roseovarius nubinhibens ism complexed with magnesium
32c1f9cA_



not modelled 100.0 18 PDB header:isomerase
Chain: A: PDB Molecule:protein (muconate cycloisomerase i);
PDBTitle: crystal structure of mle d178n variant
33c3i4kA_



not modelled 100.0 22 PDB header:isomerase
Chain: A: PDB Molecule:muconate lactonizing enzyme;
PDBTitle: crystal structure of muconate lactonizing enzyme from2 corynebacterium glutamicum
34c3mkcA_



not modelled 100.0 17 PDB header:isomerase
Chain: A: PDB Molecule:racemase;
PDBTitle: crystal structure of a putative racemase
35c2qdeA_



not modelled 100.0 21 PDB header:lyase
Chain: A: PDB Molecule:mandelate racemase/muconate lactonizing enzyme family
PDBTitle: crystal structure of mandelate racemase/muconate lactonizing family2 protein from azoarcus sp. ebn1
36c3sqsA_



not modelled 100.0 18 PDB header:isomerase
Chain: A: PDB Molecule:mandelate racemase/muconate lactonizing protein;
PDBTitle: crystal structure of a putative mandelate racemase/muconate2 lactonizing protein from dinoroseobacter shibae dfl 12
37c3sjnB_



not modelled 100.0 22 PDB header:lyase
Chain: B: PDB Molecule:mandelate racemase/muconate lactonizing protein;
PDBTitle: crystal structure of enolase spea_3858 (target efi-500646) from2 shewanella pealeana with magnesium bound
38c3es8D_



not modelled 100.0 19 PDB header:isomerase, lyase
Chain: D: PDB Molecule:muconate cycloisomerase;
PDBTitle: crystal structure of divergent enolase from oceanobacillus2 iheyensis complexed with mg and l-malate.
39c3n4eA_



not modelled 100.0 19 PDB header:isomerase
Chain: A: PDB Molecule:mandelate racemase/muconate lactonizing enzyme, c-terminal
PDBTitle: crystal structure of mandelate racemase/muconate lactonizing protein2 from paracoccus denitrificans pd1222
40c3dipA_



not modelled 100.0 20 PDB header:lyase
Chain: A: PDB Molecule:enolase;
PDBTitle: crystal structure of an enolase protein from the2 environmental genome shotgun sequencing of the sargasso sea
41c3bsmD_



not modelled 100.0 20 PDB header:lyase
Chain: D: PDB Molecule:mandelate racemase/muconate lactonizing enzyme;
PDBTitle: crystal structure of d-mannonate dehydratase from2 chromohalobacter salexigens
42c2qq6B_



not modelled 100.0 20 PDB header:isomerase
Chain: B: PDB Molecule:mandelate racemase/muconate lactonizing enzyme-
PDBTitle: crystal structure of mandelate racemase/muconate2 lactonizing enzyme-like protein from rubrobacter3 xylanophilus dsm 9941
43c3bjsB_



not modelled 100.0 20 PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:mandelate racemase/muconate lactonizing enzyme;
PDBTitle: crystal structure of a member of enolase superfamily from polaromonas2 sp. js666
44c3eezA_



not modelled 100.0 18 PDB header:isomerase
Chain: A: PDB Molecule:putative mandelate racemase/muconate lactonizing
PDBTitle: crystal structure of a putative mandelate racemase/muconate2 lactonizing enzyme from silicibacter pomeroyi
45c2rdxG_



not modelled 100.0 19 PDB header:structural genomics, unknown function
Chain: G: PDB Molecule:mandelate racemase/muconate lactonizing enzyme, putative;
PDBTitle: crystal structure of mandelate racemase/muconate lactonizing enzyme2 from roseovarius nubinhibens ism
46c3tj4B_



not modelled 100.0 17 PDB header:lyase
Chain: B: PDB Molecule:mandelate racemase;
PDBTitle: crystal structure of an enolase from agrobacterium tumefaciens (efi2 target efi-502087) no mg
47c3q45E_



not modelled 100.0 17 PDB header:isomerase
Chain: E: PDB Molecule:mandelate racemase/muconate lactonizing enzyme family;
PDBTitle: crystal structure of dipeptide epimerase from cytophaga hutchinsonii2 complexed with mg and dipeptide d-ala-l-val
48c2gdqB_



not modelled 100.0 21 PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:yitf;
PDBTitle: crystal structure of mandelate racemase/muconate lactonizing enzyme2 from bacillus subtilis at 1.8 a resolution
49c2pmqA_



not modelled 100.0 22 PDB header:isomerase
Chain: A: PDB Molecule:mandelate racemase/muconate lactonizing enzyme;
PDBTitle: crystal structure of a mandelate racemase/muconate lactonizing enzyme2 from roseovarius sp. htcc2601
50c2pozA_



not modelled 100.0 20 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:putative dehydratase;
PDBTitle: crystal structure of a putative dehydratase from mesorhizobium loti
51c3mqtV_



not modelled 100.0 20 PDB header:isomerase
Chain: V: PDB Molecule:
PDBTitle: crystal structure of a mandelate racemase/muconate lactonizing enzyme2 from shewanella pealeana
52c2ppgB_



not modelled 100.0 24 PDB header:isomerase
Chain: B: PDB Molecule:putative isomerase;
PDBTitle: crystal structure of putative isomerase from sinorhizobium meliloti
53c2podA_



not modelled 100.0 17 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:mandelate racemase / muconate lactonizing enzyme;
PDBTitle: crystal structure of a member of enolase superfamily from burkholderia2 pseudomallei k96243
54c3t8qA_



not modelled 100.0 21 PDB header:isomerase
Chain: A: PDB Molecule:mandelate racemase/muconate lactonizing enzyme family
PDBTitle: crystal structure of mandelate racemase/muconate lactonizing enzyme2 family protein from hoeflea phototrophica
55c2oz3F_



not modelled 100.0 18 PDB header:lyase
Chain: F: PDB Molecule:mandelate racemase/muconate lactonizing enzyme;
PDBTitle: crystal structure of l-rhamnonate dehydratase from azotobacter2 vinelandii
56c3dfhC_



not modelled 100.0 17 PDB header:isomerase
Chain: C: PDB Molecule:mandelate racemase;
PDBTitle: crystal structure of putative mandelate racemase / muconate2 lactonizing enzyme from vibrionales bacterium swat-3
57c1mraA_



not modelled 100.0 19 PDB header:racemase
Chain: A: PDB Molecule:mandelate racemase;
PDBTitle: mandelate racemase mutant d270n co-crystallized with (s)-atrolactate
58c3toyC_



not modelled 100.0 22 PDB header:lyase
Chain: C: PDB Molecule:mandelate racemase/muconate lactonizing enzyme family
PDBTitle: crystal structure of enolase brado_4202 (target efi-501651) from2 bradyrhizobium sp. ors278 with calcium and acetate bound
59c2hzgB_



not modelled 100.0 21 PDB header:isomerase
Chain: B: PDB Molecule:mandelate racemase/muconate lactonizing enzyme/enolase
PDBTitle: crystal stucture of predicted mandelate racemase from rhodobacter2 sphaeroides
60c3ugvE_



not modelled 100.0 20 PDB header:lyase
Chain: E: PDB Molecule:enolase;
PDBTitle: crystal structure of an enolase from alpha pretobacterium bal199 (efi2 target efi-501650) with bound mg
61c2p88E_



not modelled 100.0 22 PDB header:lyase
Chain: E: PDB Molecule:mandelate racemase/muconate lactonizing enzyme
PDBTitle: crystal structure of n-succinyl arg/lys racemase from2 bacillus cereus atcc 14579
62c3cxoA_



not modelled 100.0 20 PDB header:lyase
Chain: A: PDB Molecule:putative galactonate dehydratase;
PDBTitle: crystal structure of l-rhamnonate dehydratase from2 salmonella typhimurium complexed with mg and 3-deoxy-l-3 rhamnonate
63c3cb3B_



not modelled 100.0 21 PDB header:isomerase
Chain: B: PDB Molecule:mandelate racemase/muconate lactonizing enzyme;
PDBTitle: crystal structure of l-talarate dehydratase from polaromonas sp. js6662 complexed with mg and l-glucarate
64c1wueA_



not modelled 100.0 19 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:mandelate racemase/muconate lactonizing enzyme family
PDBTitle: crystal structure of protein gi:29375081, unknown member of enolase2 superfamily from enterococcus faecalis v583
65c3t9pB_



not modelled 100.0 23 PDB header:isomerase
Chain: B: PDB Molecule:mandelate racemase/muconate lactonizing enzyme family
PDBTitle: crystal structure of a putative mandelate racemase/muconate2 lactonizing enzyme family protein from roseovarius
66c2ovlA_



not modelled 100.0 18 PDB header:isomerase
Chain: A: PDB Molecule:putative racemase;
PDBTitle: crystal structure of a racemase from streptomyces2 coelicolor a3(2)
67c2fkpC_



not modelled 100.0 22 PDB header:isomerase
Chain: C: PDB Molecule:n-acylamino acid racemase;
PDBTitle: the mutant g127c-t313c of deinococcus radiodurans n-2 acylamino acid racemase
68c3fcpF_



not modelled 100.0 19 PDB header:isomerase
Chain: F: PDB Molecule:l-ala-d/l-glu epimerase, a muconate lactonizing
PDBTitle: crystal structure of muconate lactonizing enzyme from2 klebsiella pneumoniae
69c3cyjA_



not modelled 100.0 21 PDB header:isomerase
Chain: A: PDB Molecule:mandelate racemase/muconate lactonizing enzyme-like
PDBTitle: crystal structure of a mandelate racemase/muconate lactonizing enzyme-2 like protein from rubrobacter xylanophilus
70c3ik4A_



not modelled 100.0 16 PDB header:isomerase
Chain: A: PDB Molecule:mandelate racemase/muconate lactonizing protein;
PDBTitle: crystal structure of mandelate racemase/muconate lactonizing protein2 from herpetosiphon aurantiacus
71c2zc8B_



not modelled 100.0 23 PDB header:metal binding protein
Chain: B: PDB Molecule:n-acylamino acid racemase;
PDBTitle: crystal structure of n-acylamino acid racemase from thermus2 thermophilus hb8
72c3mwcA_



not modelled 100.0 13 PDB header:ligase
Chain: A: PDB Molecule:mandelate racemase/muconate lactonizing protein;
PDBTitle: crystal structure of probable o-succinylbenzoic acid synthetase from2 kosmotoga olearia
73c2p0iA_



not modelled 100.0 15 PDB header:lyase
Chain: A: PDB Molecule:l-rhamnonate dehydratase;
PDBTitle: crystal structure of l-rhamnonate dehydratase from gibberella zeae
74c1wufB_



not modelled 100.0 15 PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:hypothetical protein lin2664;
PDBTitle: crystal structure of protein gi:16801725, member of enolase2 superfamily from listeria innocua clip11262
75c3ddmD_



not modelled 100.0 20 PDB header:lyase
Chain: D: PDB Molecule:putative mandelate racemase/muconate lactonizing
PDBTitle: crystal structure of mandelate racemase/muconate2 lactonizing enzyme from bordetella bronchiseptica rb50
76c3n4fD_



not modelled 100.0 20 PDB header:isomerase
Chain: D: PDB Molecule:mandelate racemase/muconate lactonizing protein;
PDBTitle: crystal structure of mandelate racemase/muconate lactonizing protein2 from geobacillus sp. y412mc10
77c2dw7G_



not modelled 100.0 16 PDB header:lyase
Chain: G: PDB Molecule:bll6730 protein;
PDBTitle: crystal structure of d-tartrate dehydratase from2 bradyrhizobium japonicum complexed with mg++ and meso-3 tartrate
78c1sjaA_



not modelled 100.0 19 PDB header:lyase, isomerase
Chain: A: PDB Molecule:n-acylamino acid racemase;
PDBTitle: x-ray structure of o-succinylbenzoate synthase complexed2 with n-acetylmethionine
79c2oz8B_



not modelled 100.0 20 PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:mll7089 protein;
PDBTitle: crystal structure of putative mandelate racemase from mesorhizobium2 loti
80c3msyC_



not modelled 100.0 17 PDB header:isomerase
Chain: C: PDB Molecule:mandelate racemase/muconate lactonizing enzyme;
PDBTitle: crystal structure of mandelate racemase/muconate lactonizing enzyme2 from a marine actinobacterium
81c3px5A_



not modelled 100.0 15 PDB header:metal binding protein
Chain: A: PDB Molecule:enzyme of enolase superfamily;
PDBTitle: structure of efi enolase target en500555, a putative dipeptide2 epimerase: apo structure
82c1jpmB_



not modelled 100.0 21 PDB header:isomerase
Chain: B: PDB Molecule:l-ala-d/l-glu epimerase;
PDBTitle: l-ala-d/l-glu epimerase
83c3jw7E_



not modelled 100.0 19 PDB header:isomerase
Chain: E: PDB Molecule:dipeptide epimerase;
PDBTitle: crystal structure of dipeptide epimerase from enterococcus faecalis2 v583 complexed with mg and dipeptide l-ile-l-tyr
84c3qldB_



not modelled 100.0 21 PDB header:isomerase
Chain: B: PDB Molecule:mandelate racemase/muconate lactonizing protein;
PDBTitle: structure of probable mandelate racemase (aalaa1draft_2112) from2 alicyclobacillus acidocaldarius
85c3ritE_



not modelled 100.0 16 PDB header:isomerase
Chain: E: PDB Molecule:dipeptide epimerase;
PDBTitle: crystal structure of dipeptide epimerase from methylococcus capsulatus2 complexed with mg and dipeptide l-arg-d-lys
86c3dfyJ_



not modelled 100.0 20 PDB header:isomerase
Chain: J: PDB Molecule:muconate cycloisomerase;
PDBTitle: crystal structure of apo dipeptide epimerase from2 thermotoga maritima
87c3ijlA_



not modelled 100.0 18 PDB header:isomerase
Chain: A: PDB Molecule:muconate cycloisomerase;
PDBTitle: structure of dipeptide epimerase from bacteroides thetaiotaomicron2 complexed with l-pro-d-glu; nonproductive substrate binding.
88c2oktA_



not modelled 100.0 16 PDB header:lyase
Chain: A: PDB Molecule:o-succinylbenzoic acid synthetase;
PDBTitle: crystal structure of o-succinylbenzoic acid synthetase from2 staphylococcus aureus, ligand-free form
89d1bqga1



not modelled 100.0 74 Fold:TIM beta/alpha-barrel
Superfamily:Enolase C-terminal domain-like
Family:D-glucarate dehydratase-like
90c2pgeA_



not modelled 100.0 20 PDB header:lyase
Chain: A: PDB Molecule:menc;
PDBTitle: crystal structure of menc from desulfotalea psychrophila2 lsv54
91c1jpdX_



not modelled 100.0 14 PDB header:isomerase
Chain: X: PDB Molecule:l-ala-d/l-glu epimerase;
PDBTitle: l-ala-d/l-glu epimerase
92d1muca1



not modelled 100.0 17 Fold:TIM beta/alpha-barrel
Superfamily:Enolase C-terminal domain-like
Family:D-glucarate dehydratase-like
93d2gl5a1



not modelled 100.0 18 Fold:TIM beta/alpha-barrel
Superfamily:Enolase C-terminal domain-like
Family:D-glucarate dehydratase-like
94d2chra1



not modelled 100.0 18 Fold:TIM beta/alpha-barrel
Superfamily:Enolase C-terminal domain-like
Family:D-glucarate dehydratase-like
95d1nu5a1



not modelled 100.0 19 Fold:TIM beta/alpha-barrel
Superfamily:Enolase C-terminal domain-like
Family:D-glucarate dehydratase-like
96c3cawB_



not modelled 100.0 16 PDB header:oxidoreductase
Chain: B: PDB Molecule:o-succinylbenzoate synthase;
PDBTitle: crystal structure of o-succinylbenzoate synthase from2 bdellovibrio bacteriovorus liganded with mg
97d1rvka1



not modelled 100.0 17 Fold:TIM beta/alpha-barrel
Superfamily:Enolase C-terminal domain-like
Family:D-glucarate dehydratase-like
98d1r0ma1



not modelled 100.0 25 Fold:TIM beta/alpha-barrel
Superfamily:Enolase C-terminal domain-like
Family:D-glucarate dehydratase-like
99d1wuea1



not modelled 100.0 20 Fold:TIM beta/alpha-barrel
Superfamily:Enolase C-terminal domain-like
Family:D-glucarate dehydratase-like
100d2gdqa1



not modelled 100.0 23 Fold:TIM beta/alpha-barrel
Superfamily:Enolase C-terminal domain-like
Family:D-glucarate dehydratase-like
101d1wufa1



not modelled 100.0 17 Fold:TIM beta/alpha-barrel
Superfamily:Enolase C-terminal domain-like
Family:D-glucarate dehydratase-like
102d1sjda1



not modelled 100.0 24 Fold:TIM beta/alpha-barrel
Superfamily:Enolase C-terminal domain-like
Family:D-glucarate dehydratase-like
103d1yeya1



not modelled 100.0 21 Fold:TIM beta/alpha-barrel
Superfamily:Enolase C-terminal domain-like
Family:D-glucarate dehydratase-like
104d1tzza1



not modelled 100.0 17 Fold:TIM beta/alpha-barrel
Superfamily:Enolase C-terminal domain-like
Family:D-glucarate dehydratase-like
105c2oztA_



not modelled 100.0 17 PDB header:lyase
Chain: A: PDB Molecule:tlr1174 protein;
PDBTitle: crystal structure of o-succinylbenzoate synthase from2 thermosynechococcus elongatus bp-1
106d2mnra1



not modelled 100.0 21 Fold:TIM beta/alpha-barrel
Superfamily:Enolase C-terminal domain-like
Family:D-glucarate dehydratase-like
107c1kczA_



not modelled 100.0 13 PDB header:lyase
Chain: A: PDB Molecule:beta-methylaspartase;
PDBTitle: crystal structure of beta-methylaspartase from clostridium2 tetanomorphum. mg-complex.
108d1jpma1



not modelled 100.0 20 Fold:TIM beta/alpha-barrel
Superfamily:Enolase C-terminal domain-like
Family:D-glucarate dehydratase-like
109c1kkoB_



not modelled 100.0 15 PDB header:lyase
Chain: B: PDB Molecule:3-methylaspartate ammonia-lyase;
PDBTitle: crystal structure of citrobacter amalonaticus2 methylaspartate ammonia lyase
110c2qvhB_



not modelled 100.0 23 PDB header:lyase
Chain: B: PDB Molecule:o-succinylbenzoate-coa synthase;
PDBTitle: crystal structure of o-succinylbenzoate synthase complexed with o-2 succinyl benzoate (osb)
111c3gc2A_



not modelled 100.0 21 PDB header:lyase
Chain: A: PDB Molecule:o-succinylbenzoate synthase;
PDBTitle: 1.85 angstrom crystal structure of o-succinylbenzoate synthase from2 salmonella typhimurium in complex with succinic acid
112c2pa6A_



not modelled 100.0 14 PDB header:lyase
Chain: A: PDB Molecule:enolase;
PDBTitle: crystal structure of mj0232 from methanococcus jannaschii
113c3uj2C_



not modelled 100.0 16 PDB header:lyase
Chain: C: PDB Molecule:enolase 1;
PDBTitle: crystal structure of an enolase from anaerostipes caccae (efi target2 efi-502054) with bound mg and sulfate
114c3qn3B_



not modelled 100.0 13 PDB header:lyase
Chain: B: PDB Molecule:enolase;
PDBTitle: phosphopyruvate hydratase from campylobacter jejuni.
115c1l8pC_



not modelled 100.0 16 PDB header:lyase
Chain: C: PDB Molecule:enolase 1;
PDBTitle: mg-phosphonoacetohydroxamate complex of s39a yeast enolase 1
116c3tqpA_



not modelled 100.0 14 PDB header:lyase
Chain: A: PDB Molecule:enolase;
PDBTitle: structure of an enolase (eno) from coxiella burnetii
117c1iyxA_



not modelled 100.0 16 PDB header:lyase
Chain: A: PDB Molecule:enolase;
PDBTitle: crystal structure of enolase from enterococcus hirae
118c2akmA_



not modelled 100.0 11 PDB header:lyase
Chain: A: PDB Molecule:gamma enolase;
PDBTitle: fluoride inhibition of enolase: crystal structure of the2 inhibitory complex
119c2fymA_



not modelled 100.0 13 PDB header:lyase
Chain: A: PDB Molecule:enolase;
PDBTitle: crystal structure of e. coli enolase complexed with the2 minimal binding segment of rnase e.
120c2ptwA_



not modelled 100.0 13 PDB header:lyase
Chain: A: PDB Molecule:enolase;
PDBTitle: crystal structure of the t. brucei enolase complexed with2 sulphate, identification of a metal binding site iv

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite



Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0