PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c3ijlA_

Fold library id	PDB Header	Molecule	Title
c3ijlA_	PDB header: isomerase	Chain: A: PDB Molecule: muconate cycloisomerase;	PDBTitle: structure of dipeptide epimerase from bacteroides thetaiotaomicron2 complexed with l-pro-d-glu; nonproductive substrate binding.

Links to external resources
Added to library: Sat Aug 28 17:48:39 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence K M T F F P Y E L K L R H V F T V A T Y S R T T T P D V Q V E I E Y E G V T G Y G E A S M P P Y L G E T V E S V M N F L K K V N L E Q F S D

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
T T
G G G S
T T
T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence P F Q L E D I L S Y V D S L S P K D T A A K A A V D I A L H D L V G K L L G A P W Y K I W G L N K E K T P S T T F T I G I D T P D V V R A K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
T
S
T S B T T
G G G
B B
B

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence T K E C A G L F N I L K V K L G R D N D K E M I E T I R S V T D L P I A V D A N Q G W K D R Q Y A L D M I H W L K E K G I V M I E Q P M P K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
S S
S S S
T T
T T
T T
S
T

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . . . . . . . . 260 . . . . . . . . . 270 . . . . . . . . . 280

Sequence E Q L D D I A W V T Q Q S P L P V F A D E S L Q R L G D V A A L K G A F T G I N I K L M K C T G M R E A W K M V T L A H A L G M R V M V G C

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
T
S S
S T T
S G G G T G G G B T T B S
T S T T

. . . . . . . . . 290 . . . . . . . . . 300 . . . . . . . . . 310 . . . . . . . . . 320 . . . . . . . . . 330 . . . . . . .

Sequence M T E T S C A I S A A S Q F S P A V D F A D L D G N L L I S N D R F K G V E V V N G K I T L N D L P G I G V M K P

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
T T G G G
S
G G G G B S
B
T T
S
S B T
B

Download: PDB structure FASTA sequence
Hidden Markov model

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

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Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	K	M	T	F	F	P	Y	E	L	K	L	R	H	V	F	T	V	A	T	Y	S	R	T	T	T	P	D	V	Q	V	E	I	E	Y	E	G	V	T	G	Y	G	E	A	S	M	P	P	Y	L	G	E	T	V	E	S	V	M	N	F	L	K	K	V	N	L	E	Q	F	S	D
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																		T	T																T	T											G	G	G	S											T	T				T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	P	F	Q	L	E	D	I	L	S	Y	V	D	S	L	S	P	K	D	T	A	A	K	A	A	V	D	I	A	L	H	D	L	V	G	K	L	L	G	A	P	W	Y	K	I	W	G	L	N	K	E	K	T	P	S	T	T	F	T	I	G	I	D	T	P	D	V	V	R	A	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T	T												T		S																						T	S	B					T	T			G	G	G			B	B			B
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	T	K	E	C	A	G	L	F	N	I	L	K	V	K	L	G	R	D	N	D	K	E	M	I	E	T	I	R	S	V	T	D	L	P	I	A	V	D	A	N	Q	G	W	K	D	R	Q	Y	A	L	D	M	I	H	W	L	K	E	K	G	I	V	M	I	E	Q	P	M	P	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)						T	T		S	S						S	S	S											T	T										T	T																		T	T								S		T
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Sequence	E	Q	L	D	D	I	A	W	V	T	Q	Q	S	P	L	P	V	F	A	D	E	S	L	Q	R	L	G	D	V	A	A	L	K	G	A	F	T	G	I	N	I	K	L	M	K	C	T	G	M	R	E	A	W	K	M	V	T	L	A	H	A	L	G	M	R	V	M	V	G	C
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T											T		S	S					S	T	T			S	G	G	G	T	G	G	G	B	T	T	B	S										T	S														T	T
	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.
Sequence	M	T	E	T	S	C	A	I	S	A	A	S	Q	F	S	P	A	V	D	F	A	D	L	D	G	N	L	L	I	S	N	D	R	F	K	G	V	E	V	V	N	G	K	I	T	L	N	D	L	P	G	I	G	V	M	K	P
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		S											T	T	G	G	G		S						G	G	G	G	B	S					B						T	T						S		S	B	T			B