PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c3jw7E_

Fold library id	PDB Header	Molecule	Title
c3jw7E_	PDB header: isomerase	Chain: E: PDB Molecule: dipeptide epimerase;	PDBTitle: crystal structure of dipeptide epimerase from enterococcus faecalis2 v583 complexed with mg and dipeptide l-ile-l-tyr

Links to external resources
Added to library: Sat Aug 28 20:31:15 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence M K I K Q V H V R A S K I K L K E T F T I A L G T I E S A D S A I V E I E T E E G L V G Y G E G G P G I F I T G E T L A G T L E T I E L F G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T T T S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence Q A I I G L N P F N I E K I H E V M D K I S A F A P A A K A A I D I A C Y D L M G Q K A Q L P L Y Q L L G G Y D N Q V I T D I T L G I D E P

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S T T
T T
S S
T S B T T
S
S
S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence N V M A Q K A V E K V K L G F D T L K I K V G T G I E A D I A R V K A I R E A V G F D I K L R L D A N Q A W T P K D A V K A I Q A L A D Y Q

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T T
S
T T S
T T
S
T G G G

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . . . . . . . . 260 . . . . . . . . . 270 . . . . . . . . . 280

Sequence I E L V E Q P V K R R D L E G L K Y V T S Q V N T T I M A D E S C F D A Q D A L E L V K K G T V D V I N I K L M K C G G I H E A L K I N Q I

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
T T
S S S T T
S T
S
T S

. . . . . . . . . 290 . . . . . . . . . 300 . . . . . . . . . 310 . . . . . . . . . 320 . . . . . . . . . 330 . . . . . . . . . 340 . . . . . . . . . 350

Sequence C E T A G I E C M I G C M A E E T T I G I T A A A H L A A A Q K N I T R A D L D A T F G L E T A P V T G G V S L E A K P L L E L G E A A G L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
T T
T T
G G G G B S S
S S S B S S
S
S
S S S B T

. . . . .

Sequence G I S I Y

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
B

Download: PDB structure FASTA sequence
Hidden Markov model

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

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Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	M	K	I	K	Q	V	H	V	R	A	S	K	I	K	L	K	E	T	F	T	I	A	L	G	T	I	E	S	A	D	S	A	I	V	E	I	E	T	E	E	G	L	V	G	Y	G	E	G	G	P	G	I	F	I	T	G	E	T	L	A	G	T	L	E	T	I	E	L	F	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																						T	T																T	T	S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	Q	A	I	I	G	L	N	P	F	N	I	E	K	I	H	E	V	M	D	K	I	S	A	F	A	P	A	A	K	A	A	I	D	I	A	C	Y	D	L	M	G	Q	K	A	Q	L	P	L	Y	Q	L	L	G	G	Y	D	N	Q	V	I	T	D	I	T	L	G	I	D	E	P
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			S	T	T			T	T														S	S																					T	S	B					T	T		S		S										S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	N	V	M	A	Q	K	A	V	E	K	V	K	L	G	F	D	T	L	K	I	K	V	G	T	G	I	E	A	D	I	A	R	V	K	A	I	R	E	A	V	G	F	D	I	K	L	R	L	D	A	N	Q	A	W	T	P	K	D	A	V	K	A	I	Q	A	L	A	D	Y	Q
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)												T	T	T										S																		T	T	S							T	T		S												T	G	G	G
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Sequence	I	E	L	V	E	Q	P	V	K	R	R	D	L	E	G	L	K	Y	V	T	S	Q	V	N	T	T	I	M	A	D	E	S	C	F	D	A	Q	D	A	L	E	L	V	K	K	G	T	V	D	V	I	N	I	K	L	M	K	C	G	G	I	H	E	A	L	K	I	N	Q	I
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)								S		T	T													S	S					S	T	T			S											T			S										T	S
	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350
Sequence	C	E	T	A	G	I	E	C	M	I	G	C	M	A	E	E	T	T	I	G	I	T	A	A	A	H	L	A	A	A	Q	K	N	I	T	R	A	D	L	D	A	T	F	G	L	E	T	A	P	V	T	G	G	V	S	L	E	A	K	P	L	L	E	L	G	E	A	A	G	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)					T									T	T																	T	T								G	G	G	G	B	S	S		S	S	S	B	S	S		S				S						S	S	S	B	T
	.	.	.	.	.
Sequence	G	I	S	I	Y
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		B