PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c3q45E_

Fold library id	PDB Header	Molecule	Title
c3q45E_	PDB header: isomerase	Chain: E: PDB Molecule: mandelate racemase/muconate lactonizing enzyme family;	PDBTitle: crystal structure of dipeptide epimerase from cytophaga hutchinsonii2 complexed with mg and dipeptide d-ala-l-val

Links to external resources
Added to library: Sat Feb 19 08:44:14 2011

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence M I I T Q V E L Y K S P V K L K E P F K I S L G I L T H A N N V I V R I H T A S G H I G Y G E C S P F M T I H G E S M D T A F I V G Q Y L A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
B T T T T
S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence K G L I G T S C L D I V S N S L L M D A I I Y G N S C I K S A F N I A L Y D L A A Q H A G L P L Y A F L G G K K D K I I Q T D Y T V S I D E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T S B T T
S
T S B T T
S
B
S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence P H K M A A D A V Q I K K N G F E I I K V K V G G S K E L D V E R I R M I R E A A G D S I T L R I D A N Q G W S V E T A I E T L T L L E P Y

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
S
S
S S S
T T
B
G G G

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . . . . . . . . 260 . . . . . . . . . 270 . . . . . . . . . 280

Sequence N I Q H C E E P V S R N L Y T A L P K I R Q A C R I P I M A D E S C C N S F D A E R L I Q I Q A C D S F N L K L S K S A G I T N A L N I I R

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
B
G G G G G G
S S
S T T
S T T
S
T T T T T S

. . . . . . . . . 290 . . . . . . . . . 300 . . . . . . . . . 310 . . . . . . . . . 320 . . . . . . . . . 330 . . . . . . . . . 340 . . . . . . . . . 350

Sequence L A E Q A H M P V Q V G G F L E S R L G F T A A A H V A L V S K T I C Y Y D F D T P L M F E A D P V R G G I V Y Q Q R G I I E V P E T A G L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
S S
T S
T T
G G G G B S S
S
G G G
S S B S

. . . . . . . . . 360 . . . . . . . . .

Sequence G A G Y Q K D Y L S G L E K I C I N V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T T G G G S

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	M	I	I	T	Q	V	E	L	Y	K	S	P	V	K	L	K	E	P	F	K	I	S	L	G	I	L	T	H	A	N	N	V	I	V	R	I	H	T	A	S	G	H	I	G	Y	G	E	C	S	P	F	M	T	I	H	G	E	S	M	D	T	A	F	I	V	G	Q	Y	L	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		B																				T	T																T	T																S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	K	G	L	I	G	T	S	C	L	D	I	V	S	N	S	L	L	M	D	A	I	I	Y	G	N	S	C	I	K	S	A	F	N	I	A	L	Y	D	L	A	A	Q	H	A	G	L	P	L	Y	A	F	L	G	G	K	K	D	K	I	I	Q	T	D	Y	T	V	S	I	D	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				T	T	S	B	T	T														S																						T	S	B					T	T					S				B						S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	P	H	K	M	A	A	D	A	V	Q	I	K	K	N	G	F	E	I	I	K	V	K	V	G	G	S	K	E	L	D	V	E	R	I	R	M	I	R	E	A	A	G	D	S	I	T	L	R	I	D	A	N	Q	G	W	S	V	E	T	A	I	E	T	L	T	L	L	E	P	Y
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)														T	T		S								S																		S	S	S							T	T		B													G	G	G
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Sequence	N	I	Q	H	C	E	E	P	V	S	R	N	L	Y	T	A	L	P	K	I	R	Q	A	C	R	I	P	I	M	A	D	E	S	C	C	N	S	F	D	A	E	R	L	I	Q	I	Q	A	C	D	S	F	N	L	K	L	S	K	S	A	G	I	T	N	A	L	N	I	I	R
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			S						B		G	G	G	G	G	G									S	S					S	T	T			S										T	T			S						T	T	T	T	T	S
	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350
Sequence	L	A	E	Q	A	H	M	P	V	Q	V	G	G	F	L	E	S	R	L	G	F	T	A	A	A	H	V	A	L	V	S	K	T	I	C	Y	Y	D	F	D	T	P	L	M	F	E	A	D	P	V	R	G	G	I	V	Y	Q	Q	R	G	I	I	E	V	P	E	T	A	G	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)					T	T								S	S														T	S		T	T								G	G	G	G	B	S	S						S					G	G	G							S	S	B	S
	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.
Sequence	G	A	G	Y	Q	K	D	Y	L	S	G	L	E	K	I	C	I	N	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)						T	T	T	G	G	G	S