PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c3ddmD_

Fold library id	PDB Header	Molecule	Title
c3ddmD_	PDB header: lyase	Chain: D: PDB Molecule: putative mandelate racemase/muconate lactonizing	PDBTitle: crystal structure of mandelate racemase/muconate2 lactonizing enzyme from bordetella bronchiseptica rb50

Links to external resources
Added to library: Tue Mar 16 12:58:37 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence A S I T P A R V R A H V F R Y P V H D R P A V L V E V E D S D G A V G W G E V W C N F P A C G A E H R A R L V E T V L A P L L T A R A F A D

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
B
T T S
S S T T T T T S
B S S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence P A Q A F A H L E A R T A V L A I Q T G E P G P L A Q A I A G L D I A L C D L A A R R A G Q P L W A W L G G S G D R I G V Y A S G I N P E N

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T T
T
B T T
S
S S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence P E D V V A R K A A E G Y R A F K L K V G F D D A R D V R N A L H V R E L L G A A T P L M A D A N Q G W D L P R A R Q M A Q R L G P A Q L D

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
S S
S S S
T T
G G G

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . . . . . . . . 260 . . . . . . . . . 270 . . . . . . . . . 280

Sequence W L E E P L R A D R P A A E W A E L A Q A A P M P L A G G E N I A G V A A F E T A L A A R S L R V M Q P D L A K W G G F S G C L P V A R A V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
T T S
S S
T T
S T
T T T T T

. . . . . . . . . 290 . . . . . . . . . 300 . . . . . . . . . 310 . . . . . . . . . 320 . . . . . . . . . 330 . . . . . . . . . 340 . . . . . . . . . 350

Sequence V A A G L R Y C P H Y L G A G I G L Q A S A H L L A A V P G L A S P G L L G V D A N D N P L R S L L S P A L A T L H E G R I T L G G A P G L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
S
S
S S S
S
T S
G G G G G
S S
S
S B T

. . . . . . . . . 360 . . .

Sequence G V T P D L A A L R A A C

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S
T T

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

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Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	A	S	I	T	P	A	R	V	R	A	H	V	F	R	Y	P	V	H	D	R	P	A	V	L	V	E	V	E	D	S	D	G	A	V	G	W	G	E	V	W	C	N	F	P	A	C	G	A	E	H	R	A	R	L	V	E	T	V	L	A	P	L	L	T	A	R	A	F	A	D
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			B																											T	T	S											S	S	T	T												T						T	T	S		B	S	S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	P	A	Q	A	F	A	H	L	E	A	R	T	A	V	L	A	I	Q	T	G	E	P	G	P	L	A	Q	A	I	A	G	L	D	I	A	L	C	D	L	A	A	R	R	A	G	Q	P	L	W	A	W	L	G	G	S	G	D	R	I	G	V	Y	A	S	G	I	N	P	E	N
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)											T	T								T																									T		B					T	T		S													S	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	P	E	D	V	V	A	R	K	A	A	E	G	Y	R	A	F	K	L	K	V	G	F	D	D	A	R	D	V	R	N	A	L	H	V	R	E	L	L	G	A	A	T	P	L	M	A	D	A	N	Q	G	W	D	L	P	R	A	R	Q	M	A	Q	R	L	G	P	A	Q	L	D
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)												T									S	S																		S	S	S							T	T															G	G	G
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Sequence	W	L	E	E	P	L	R	A	D	R	P	A	A	E	W	A	E	L	A	Q	A	A	P	M	P	L	A	G	G	E	N	I	A	G	V	A	A	F	E	T	A	L	A	A	R	S	L	R	V	M	Q	P	D	L	A	K	W	G	G	F	S	G	C	L	P	V	A	R	A	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)						S		T	T	S													S	S						T	T			S											T									T	T	T	T	T
	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350
Sequence	V	A	A	G	L	R	Y	C	P	H	Y	L	G	A	G	I	G	L	Q	A	S	A	H	L	L	A	A	V	P	G	L	A	S	P	G	L	L	G	V	D	A	N	D	N	P	L	R	S	L	L	S	P	A	L	A	T	L	H	E	G	R	I	T	L	G	G	A	P	G	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			T	T									S															S			S	S	S									S							T	S		G	G	G	G	G			S	S						S		S	B	T
	.	.	.	.	.	.	.	.	.	360	.	.	.
Sequence	G	V	T	P	D	L	A	A	L	R	A	A	C
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S										T	T