PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c3mqtV_

Fold library id	PDB Header	Molecule	Title
c3mqtV_	PDB header: isomerase	Chain: V: PDB Molecule:	PDBTitle: crystal structure of a mandelate racemase/muconate lactonizing enzyme2 from shewanella pealeana

Links to external resources
Added to library: Sat Aug 28 19:32:11 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence A N I V S V E F I P V N V A S E N T V I V K V T D E N G V Y G L G E A D G P P E C M K A F S E I E N E H K W L N N I K E A V I G R D P L E F

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T S
S
T T
B T T B
G G G G T T T S
T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence R A N Y N R M Y D T T K W I G M R G L G L F A I S G I D M A L Y D L A G K Q L G V P A Y K L M G G A Q K A Q L T P Y F T L Y P S V A A D A T

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T T T
S S T T
B T T
S S
B
T T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence L S E I V E A Y K P L I A K A K E R G A K A V K V C I I P N D K V S D K E I V A Y L R E L R E V I G W D M D M M V D C L Y R W T D W Q K A R

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
S
T T S
S S S
T T
S

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . . . . . . . . 260 . . . . . . . . . 270 . . . . . . . . . 280

Sequence W T F R Q L E D I D L Y F I E A C L Q H D D L I G H Q K L A A A I N T R L C G A E M S T T R F E A Q E W L E K T G I S V V Q S D Y N R C G G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) G G G G
S S
S
T T
S S S
T T
S
T T T S S

. . . . . . . . . 290 . . . . . . . . . 300 . . . . . . . . . 310 . . . . . . . . . 320 . . . . . . . . . 330 . . . . . . . . . 340 . . . . . . . . . 350

Sequence V T E L L R I M D I C E H H N A Q L M P H N W K T G I T A A A A R H F G I V C H I S E Y V E Y L H P D F W N G T L T Q Q L T L N E P K I I D

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
S
T T
S
G G G
S B S
B T

. . . . . . . . . 360 . . . . . . . . . 370 . . . . . . . .

Sequence G A I E V S D K P G L G I E L N I E F V E Q V T G H K F

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T B B
S S B T
B
S

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

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Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	A	N	I	V	S	V	E	F	I	P	V	N	V	A	S	E	N	T	V	I	V	K	V	T	D	E	N	G	V	Y	G	L	G	E	A	D	G	P	P	E	C	M	K	A	F	S	E	I	E	N	E	H	K	W	L	N	N	I	K	E	A	V	I	G	R	D	P	L	E	F
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																										T	T	S									S									T	T					B	T	T	B			G	G	G	G	T	T	T	S		T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	R	A	N	Y	N	R	M	Y	D	T	T	K	W	I	G	M	R	G	L	G	L	F	A	I	S	G	I	D	M	A	L	Y	D	L	A	G	K	Q	L	G	V	P	A	Y	K	L	M	G	G	A	Q	K	A	Q	L	T	P	Y	F	T	L	Y	P	S	V	A	A	D	A	T
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)											T	T	T	T		S	S	T																						T		B					T	T				S	S		B												T	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	L	S	E	I	V	E	A	Y	K	P	L	I	A	K	A	K	E	R	G	A	K	A	V	K	V	C	I	I	P	N	D	K	V	S	D	K	E	I	V	A	Y	L	R	E	L	R	E	V	I	G	W	D	M	D	M	M	V	D	C	L	Y	R	W	T	D	W	Q	K	A	R
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																		T	T		S										T	T	S																		S	S	S							T	T			S
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Sequence	W	T	F	R	Q	L	E	D	I	D	L	Y	F	I	E	A	C	L	Q	H	D	D	L	I	G	H	Q	K	L	A	A	A	I	N	T	R	L	C	G	A	E	M	S	T	T	R	F	E	A	Q	E	W	L	E	K	T	G	I	S	V	V	Q	S	D	Y	N	R	C	G	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)						G	G	G	G			S				S		S		T	T												S	S	S						T	T																	S						T	T	T	S	S
	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350
Sequence	V	T	E	L	L	R	I	M	D	I	C	E	H	H	N	A	Q	L	M	P	H	N	W	K	T	G	I	T	A	A	A	A	R	H	F	G	I	V	C	H	I	S	E	Y	V	E	Y	L	H	P	D	F	W	N	G	T	L	T	Q	Q	L	T	L	N	E	P	K	I	I	D
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)														T	T									S																T	T		S							G	G	G									S	B	S						B	T
	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.
Sequence	G	A	I	E	V	S	D	K	P	G	L	G	I	E	L	N	I	E	F	V	E	Q	V	T	G	H	K	F
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T	B	B					S	S	B	T				B											S