PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c2qdeA_

Fold library id	PDB Header	Molecule	Title
c2qdeA_	PDB header: lyase	Chain: A: PDB Molecule: mandelate racemase/muconate lactonizing enzyme	PDBTitle: crystal structure of mandelate racemase/muconate2 lactonizing family protein from azoarcus sp. ebn1

Links to external resources
Added to library: Tue Mar 16 13:27:37 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence L K I T K V E V I P I S T P M K R I D G V L L K L H S D E G L V G I A D A G D T S S W Y R G E T Q D S I T S M I C D F F A P K V L L G E D P

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T S
T T T T
T T T T T
T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence T K I E K I V G R M D I L T R D N N Q A K A T V D F A L H D L V G K R F G V P V Y Q L L G G K T I E R I P L G L V L G A G E P E A V A E E A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
S S
T S B T T
S
S S B
S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence L A V L R E G F H F V K L K A G G P L K A D I A M V A E V R R A V G D D V D L F I D I N G A W T Y D Q A L T T I R A L E K Y N L S K I E Q P

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
S
S
T T S
T T
G G G
S

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . . . . . . . . 260 . . . . . . . . . 270 . . . . . . . . . 280

Sequence L P A W D L D G M A R L R G K V A T P I Y A D E S A Q E L H D L L A I I N K G A A D G L M I K T Q K A G G L L K A Q R W L T L A R L A N L P

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S
T T
T T
S S
S T T
S T
S
T S T

. . . . . . . . . 290 . . . . . . . . . 300 . . . . . . . . . 310 . . . . . . . . . 320 . . . . . . . . . 330 . . . . . . . . . 340 . . . . . . . . . 350

Sequence V I C G C M V G S G L E A S P A A H L L A A N D W I A Q F P Q E N A G P L H I H D C L N S R D I D N D I A L N V P R F E G G Y L Y P N D G P

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
T T G G G S
B
T T
S S G G G
S B T T
T T
S S

. . . . . . . . . 360 . . . . . . . . . 370 . . . . .

Sequence G L G I E L N E D L V R R L V T P G K A A R V V T

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) B T
B
B
T T

Download: PDB structure FASTA sequence
Hidden Markov model

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	L	K	I	T	K	V	E	V	I	P	I	S	T	P	M	K	R	I	D	G	V	L	L	K	L	H	S	D	E	G	L	V	G	I	A	D	A	G	D	T	S	S	W	Y	R	G	E	T	Q	D	S	I	T	S	M	I	C	D	F	F	A	P	K	V	L	L	G	E	D	P
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																												T	T	S												T	T	T	T														T					T	T	T	T			T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	T	K	I	E	K	I	V	G	R	M	D	I	L	T	R	D	N	N	Q	A	K	A	T	V	D	F	A	L	H	D	L	V	G	K	R	F	G	V	P	V	Y	Q	L	L	G	G	K	T	I	E	R	I	P	L	G	L	V	L	G	A	G	E	P	E	A	V	A	E	E	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T														S	S																					T	S	B					T	T			S		S	S			B							S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	L	A	V	L	R	E	G	F	H	F	V	K	L	K	A	G	G	P	L	K	A	D	I	A	M	V	A	E	V	R	R	A	V	G	D	D	V	D	L	F	I	D	I	N	G	A	W	T	Y	D	Q	A	L	T	T	I	R	A	L	E	K	Y	N	L	S	K	I	E	Q	P
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)							T		S								S																		T	T	S							T	T															G	G	G			S
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Sequence	L	P	A	W	D	L	D	G	M	A	R	L	R	G	K	V	A	T	P	I	Y	A	D	E	S	A	Q	E	L	H	D	L	L	A	I	I	N	K	G	A	A	D	G	L	M	I	K	T	Q	K	A	G	G	L	L	K	A	Q	R	W	L	T	L	A	R	L	A	N	L	P
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S		T	T										T	T		S	S					S	T	T			S											T			S										T	S															T
	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350
Sequence	V	I	C	G	C	M	V	G	S	G	L	E	A	S	P	A	A	H	L	L	A	A	N	D	W	I	A	Q	F	P	Q	E	N	A	G	P	L	H	I	H	D	C	L	N	S	R	D	I	D	N	D	I	A	L	N	V	P	R	F	E	G	G	Y	L	Y	P	N	D	G	P
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)							S																	T	T	G	G	G	S		B									T	T		S	S	G	G	G					S	B	T	T						T	T							S	S
	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.
Sequence	G	L	G	I	E	L	N	E	D	L	V	R	R	L	V	T	P	G	K	A	A	R	V	V	T
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	B	T				B									B		T	T