PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c3qldB_

Fold library id	PDB Header	Molecule	Title
c3qldB_	PDB header: isomerase	Chain: B: PDB Molecule: mandelate racemase/muconate lactonizing protein;	PDBTitle: structure of probable mandelate racemase (aalaa1draft_2112) from2 alicyclobacillus acidocaldarius

Links to external resources
Added to library: Sat Apr 30 08:59:16 2011

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence S L Q T C V L H R L S L P L K F P X R T A H G H I R E K Q A I L V Q L V D A D G I E G W S E C V A L A E P T Y T E E C T D T A W V X L V H H

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T T T S
B S S T T S S S
B T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence L V P R F A R W L R A A D V D P R T V C E A L R D V R G N R X S V A A I E X A V W D W Y A A R T G Q P L V G L L G G G R D R V E V S A T L G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
G G G G G G G G T T
S
T
T
S B

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence X S E S L D V L I Q S V D A A V E Q G F R R V K L K I A P G R D R A A I K A V R L R Y P D L A I A A D A N G S Y R P E D A P V L R Q L D A Y

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
T T
S
B T T B S
T T S
T T
G G G G G G G

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . . . . . . . . 260 . . . . . . . . . 270 . . . . . . . . . 280

Sequence D L Q F I E Q P L P E D D W F D L A K L Q A S L R T P V C L D E S V R S V R E L K L T A R L G A A R V L N V K P G R L G G F G A T L R A L D

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
S
T T
T
S S
S T T
S T
S
T S

. . . . . . . . . 290 . . . . . . . . . 300 . . . . . . . . . 310 . . . . . . . . . 320 . . . . . . . . . 330 . . . . . . . . . 340 . . . . . . . . . 350

Sequence V A G E A G X A A W V G G X Y E T G V G R V H G L I A A A L P L X R Y A T D L G P S D R Y F E Q D V L K E P I A F V E P G V I Q V P Q C A G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
T T S T T
S
B S
G G G T
S S
S B S S
S B T T
S S

. . . . . . . . . 360 . . . . . . . . . 370 . . . .

Sequence V A D W V D R D A V R R F S T A T W S V D L R T

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S G G G B
T T

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	S	L	Q	T	C	V	L	H	R	L	S	L	P	L	K	F	P	X	R	T	A	H	G	H	I	R	E	K	Q	A	I	L	V	Q	L	V	D	A	D	G	I	E	G	W	S	E	C	V	A	L	A	E	P	T	Y	T	E	E	C	T	D	T	A	W	V	X	L	V	H	H
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																					T	T																T	T	S										B	S	S	T	T	S	S	S		B											T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	L	V	P	R	F	A	R	W	L	R	A	A	D	V	D	P	R	T	V	C	E	A	L	R	D	V	R	G	N	R	X	S	V	A	A	I	E	X	A	V	W	D	W	Y	A	A	R	T	G	Q	P	L	V	G	L	L	G	G	G	R	D	R	V	E	V	S	A	T	L	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)										T	T					G	G	G	G	G	G	G	G	T	T			S																					T								T				S				B
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	X	S	E	S	L	D	V	L	I	Q	S	V	D	A	A	V	E	Q	G	F	R	R	V	K	L	K	I	A	P	G	R	D	R	A	A	I	K	A	V	R	L	R	Y	P	D	L	A	I	A	A	D	A	N	G	S	Y	R	P	E	D	A	P	V	L	R	Q	L	D	A	Y
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			S															T	T		S							B	T	T	B	S												T	T	S							T	T				G	G	G							G	G	G	G
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Sequence	D	L	Q	F	I	E	Q	P	L	P	E	D	D	W	F	D	L	A	K	L	Q	A	S	L	R	T	P	V	C	L	D	E	S	V	R	S	V	R	E	L	K	L	T	A	R	L	G	A	A	R	V	L	N	V	K	P	G	R	L	G	G	F	G	A	T	L	R	A	L	D
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			S						S		T	T											T		S	S					S	T	T			S											T			S										T	S
	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350
Sequence	V	A	G	E	A	G	X	A	A	W	V	G	G	X	Y	E	T	G	V	G	R	V	H	G	L	I	A	A	A	L	P	L	X	R	Y	A	T	D	L	G	P	S	D	R	Y	F	E	Q	D	V	L	K	E	P	I	A	F	V	E	P	G	V	I	Q	V	P	Q	C	A	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)					T	T																						T	T	S	T	T			S		B	S				G	G	G	T		S	S		S	B	S	S					S	B	T	T								S	S
	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.
Sequence	V	A	D	W	V	D	R	D	A	V	R	R	F	S	T	A	T	W	S	V	D	L	R	T
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S	G	G	G	B																	T	T