PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c2ppgB_

Fold library id	PDB Header	Molecule	Title
c2ppgB_	PDB header: isomerase	Chain: B: PDB Molecule: putative isomerase;	PDBTitle: crystal structure of putative isomerase from sinorhizobium2 meliloti

Links to external resources
Added to library: Tue Mar 16 12:29:52 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence S D R V K K I E S F T L T L P R P N G R G Y L V R K A N R T V Y P T F D R S V L V R I E T E N G A V G W G E T Y G L V A P R A T X E I I D D

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T S T T T T S T T
S S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence L L A D F T I G R D P F D A A A I H D D L Y D L X R V R G Y T G G F Y V D A L A A I D I A L W D L A G K L A G L P V C K L L G G Q R R D R I

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T G G G T T T
G G G T T G G G T
S S T S B G G G G T T
S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence A A Y I S G L P E D T R A K R A E L A A A W Q A K G F S S F K F A S P V A K E X E I L R E R L G P A V R I A C D X H W A H T A S E A V A L I

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S T T T
S S S
S

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . . . . . . . . 260 . . . . . . . . . 270 . . . . . . . . . 280

Sequence K A X E P H G L W F A E A P V R T E D I D G L A R V A A S V S T A I A V G E E W R T V H D X V P R V A R R A L A I V Q P E X G H K G I T Q F

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) G G G
S
T T
T T
S S
T T
S G G G T T T
S

. . . . . . . . . 290 . . . . . . . . . 300 . . . . . . . . . 310 . . . . . . . . . 320 . . . . . . . . . 330 . . . . . . . . . 340 . . . . . . . . . 350

Sequence X R I G A Y A H V H H I K V I P H A T I G A G I F L A A S L Q A S A A L A N V D C H E F Q H S I F E P N R R L L V G D X D C L N G E Y V V P

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
S S
S
T T B
T G G G G G S
T T

. . . . . . . . . 360 . . . . . . . . . 370

Sequence T G P G L G V E P S K E A Q G L L K K H

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S B T S

Download: PDB structure FASTA sequence
Hidden Markov model

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	S	D	R	V	K	K	I	E	S	F	T	L	T	L	P	R	P	N	G	R	G	Y	L	V	R	K	A	N	R	T	V	Y	P	T	F	D	R	S	V	L	V	R	I	E	T	E	N	G	A	V	G	W	G	E	T	Y	G	L	V	A	P	R	A	T	X	E	I	I	D	D
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																			T	T	S					T	T	T	T					S												T	T											S	S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	L	L	A	D	F	T	I	G	R	D	P	F	D	A	A	A	I	H	D	D	L	Y	D	L	X	R	V	R	G	Y	T	G	G	F	Y	V	D	A	L	A	A	I	D	I	A	L	W	D	L	A	G	K	L	A	G	L	P	V	C	K	L	L	G	G	Q	R	R	D	R	I
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T	T	G	G	G	T	T	T			G	G	G											T	T	G	G	G	T		S	S																							T	S	B	G	G	G	G	T	T					S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	A	A	Y	I	S	G	L	P	E	D	T	R	A	K	R	A	E	L	A	A	A	W	Q	A	K	G	F	S	S	F	K	F	A	S	P	V	A	K	E	X	E	I	L	R	E	R	L	G	P	A	V	R	I	A	C	D	X	H	W	A	H	T	A	S	E	A	V	A	L	I
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)										S	S													T	T	T																							S	S	S								S
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Sequence	K	A	X	E	P	H	G	L	W	F	A	E	A	P	V	R	T	E	D	I	D	G	L	A	R	V	A	A	S	V	S	T	A	I	A	V	G	E	E	W	R	T	V	H	D	X	V	P	R	V	A	R	R	A	L	A	I	V	Q	P	E	X	G	H	K	G	I	T	Q	F
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				G	G	G									S		T	T										T	T		S	S						T	T			S	G	G	G	T						T	T			S
	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350
Sequence	X	R	I	G	A	Y	A	H	V	H	H	I	K	V	I	P	H	A	T	I	G	A	G	I	F	L	A	A	S	L	Q	A	S	A	A	L	A	N	V	D	C	H	E	F	Q	H	S	I	F	E	P	N	R	R	L	L	V	G	D	X	D	C	L	N	G	E	Y	V	V	P
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)										T	T									S	S		S														T	T	B											T	G	G	G	G	G				S					T	T
	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370
Sequence	T	G	P	G	L	G	V	E	P	S	K	E	A	Q	G	L	L	K	K	H
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		S	S	B	T	S