PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c3bsmD_

Fold library id	PDB Header	Molecule	Title
c3bsmD_	PDB header: lyase	Chain: D: PDB Molecule: mandelate racemase/muconate lactonizing enzyme;	PDBTitle: crystal structure of d-mannonate dehydratase from2 chromohalobacter salexigens

Links to external resources
Added to library: Tue Mar 16 12:32:11 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence L K I R D A Y T I V T C P G R N F V T L K I V T E S G T H G I G D A T L N G R E M A V A A Y L D E H V V P A L I G R D A G R I E D T W Q Y L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
B
S S S
T T S
T T
T T T S B T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence Y R G A Y W R R G P V T M T A I A A V D M A L W D I K A K A A G M P L Y Q L L G G K S R E R V M T Y A H C T G Q T I E D C L G E V A R H V E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T S
T S B T
S
S S S S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence L G Y R A V R V Q S G V P G S T E K Y L N H A P K L F A A V R E R F G D D L H V L H D V H H R L T P I E A A R L G K A V E P Y H L F W L E D

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
S
S S S
T T
S
T G G G
S

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . . . . . . . . 260 . . . . . . . . . 270 . . . . . . . . . 280

Sequence C V P A E N Q E S L R L I R E H T T T P L A I G E V F N S I H D C R E L I Q N Q W I D Y I R M P L T H G G G I T A M R R V A D L A S L Y H V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
S S G G G G
S
T T
S G G G T T T
S
T T T T T T T

. . . . . . . . . 290 . . . . . . . . . 300 . . . . . . . . . 310 . . . . . . . . . 320 . . . . . . . . . 330 . . . . . . . . . 340 . . . . . . . . . 350

Sequence R T G F H G P T D L S P V C L G A A I H F D T W V P N F G I Q E H M P H T D E T D A V F P H D Y R F E D G H F L A G E S P G H G V D I D E E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T S
T T B
S
B
T T
S S B T S B

. . . . . . . .

Sequence L A A K Y P Y E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T S

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	L	K	I	R	D	A	Y	T	I	V	T	C	P	G	R	N	F	V	T	L	K	I	V	T	E	S	G	T	H	G	I	G	D	A	T	L	N	G	R	E	M	A	V	A	A	Y	L	D	E	H	V	V	P	A	L	I	G	R	D	A	G	R	I	E	D	T	W	Q	Y	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		B											S	S	S										T	T	S										T	T												T						T	T	S	B	T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	Y	R	G	A	Y	W	R	R	G	P	V	T	M	T	A	I	A	A	V	D	M	A	L	W	D	I	K	A	K	A	A	G	M	P	L	Y	Q	L	L	G	G	K	S	R	E	R	V	M	T	Y	A	H	C	T	G	Q	T	I	E	D	C	L	G	E	V	A	R	H	V	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				T	T	S																										T	S	B						T			S		S	S										S	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	L	G	Y	R	A	V	R	V	Q	S	G	V	P	G	S	T	E	K	Y	L	N	H	A	P	K	L	F	A	A	V	R	E	R	F	G	D	D	L	H	V	L	H	D	V	H	H	R	L	T	P	I	E	A	A	R	L	G	K	A	V	E	P	Y	H	L	F	W	L	E	D
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T	T		S																																S	S	S							T	T		S												T	G	G	G			S
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Sequence	C	V	P	A	E	N	Q	E	S	L	R	L	I	R	E	H	T	T	T	P	L	A	I	G	E	V	F	N	S	I	H	D	C	R	E	L	I	Q	N	Q	W	I	D	Y	I	R	M	P	L	T	H	G	G	G	I	T	A	M	R	R	V	A	D	L	A	S	L	Y	H	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		S			S	S	G	G	G	G									S						T	T			S	G	G	G	T						T	T			S						T	T	T	T	T															T	T
	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350
Sequence	R	T	G	F	H	G	P	T	D	L	S	P	V	C	L	G	A	A	I	H	F	D	T	W	V	P	N	F	G	I	Q	E	H	M	P	H	T	D	E	T	D	A	V	F	P	H	D	Y	R	F	E	D	G	H	F	L	A	G	E	S	P	G	H	G	V	D	I	D	E	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)								T	T	S																T	T	B																S		B						T	T							S	S	B	T	S	B
	.	.	.	.	.	.	.	.
Sequence	L	A	A	K	Y	P	Y	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				T	S