PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c3ritE_

Fold library id	PDB Header	Molecule	Title
c3ritE_	PDB header: isomerase	Chain: E: PDB Molecule: dipeptide epimerase;	PDBTitle: crystal structure of dipeptide epimerase from methylococcus capsulatus2 complexed with mg and dipeptide l-arg-d-lys

Links to external resources
Added to library: Sat Apr 30 08:59:48 2011

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence M K I A D I Q V R T E H F P L T R P Y R I A F R S I E E I D N L I V E I R T A D G L L G L G A A S P E R H V T G E T L E A C H A A L D H D R

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
T T S
T
T T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence L G W L M G R D I R T L P R L C R E L A E R L P A A P A A R A A L D M A L H D L V A Q C L G L P L V E I L G R A H D S L P T S V T I G I K P

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T G G G T T
G G G S T T
T S B S
S
S
B
S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence V E E T L A E A R E H L A L G F R V L K V K L C G D E E Q D F E R L R R L H E T L A G R A V V R V D P N Q S Y D R D G L L R L D R L V Q E L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
S
S S S S S
T T

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . . . . . . . . 260 . . . . . . . . . 270 . . . . . . . . . 280

Sequence G I E F I E Q P F P A G R T D W L R A L P K A I R R R I A A D E S L L G P A D A F A L A A P P A A C G I F N I K L M K C G G L A P A R R I A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
S
T T
T S
T S T T
S S S S
S
S
T S

. . . . . . . . . 290 . . . . . . . . . 300 . . . . . . . . . 310 . . . . . . . . . 320 . . . . . . . . . 330 . . . . . . . . . 340 . . . . . . . . . 350

Sequence T I A E T A G I D L M W G C M D E S R I S I A A A L H A A L A C P A T R Y L D L D G S F D L A R D V A E G G F I L E D G R L R V T E R P G L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
S
T
T T
G G G T T B S
S
S S
S S
S S S B T

. . . . .

Sequence G L V Y R

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	M	K	I	A	D	I	Q	V	R	T	E	H	F	P	L	T	R	P	Y	R	I	A	F	R	S	I	E	E	I	D	N	L	I	V	E	I	R	T	A	D	G	L	L	G	L	G	A	A	S	P	E	R	H	V	T	G	E	T	L	E	A	C	H	A	A	L	D	H	D	R
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																						T	T																T	T	S																									T		T	T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	L	G	W	L	M	G	R	D	I	R	T	L	P	R	L	C	R	E	L	A	E	R	L	P	A	A	P	A	A	R	A	A	L	D	M	A	L	H	D	L	V	A	Q	C	L	G	L	P	L	V	E	I	L	G	R	A	H	D	S	L	P	T	S	V	T	I	G	I	K	P
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T	G	G	G	T	T			G	G	G												S	T	T																					T	S	B					S			S		S				B						S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	V	E	E	T	L	A	E	A	R	E	H	L	A	L	G	F	R	V	L	K	V	K	L	C	G	D	E	E	Q	D	F	E	R	L	R	R	L	H	E	T	L	A	G	R	A	V	V	R	V	D	P	N	Q	S	Y	D	R	D	G	L	L	R	L	D	R	L	V	Q	E	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)														T	T										S																S	S	S	S	S							T	T
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Sequence	G	I	E	F	I	E	Q	P	F	P	A	G	R	T	D	W	L	R	A	L	P	K	A	I	R	R	R	I	A	A	D	E	S	L	L	G	P	A	D	A	F	A	L	A	A	P	P	A	A	C	G	I	F	N	I	K	L	M	K	C	G	G	L	A	P	A	R	R	I	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T								S		T	T							T	S							T				S	T	T			S									S	S	S		S		S										T	S
	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350
Sequence	T	I	A	E	T	A	G	I	D	L	M	W	G	C	M	D	E	S	R	I	S	I	A	A	A	L	H	A	A	L	A	C	P	A	T	R	Y	L	D	L	D	G	S	F	D	L	A	R	D	V	A	E	G	G	F	I	L	E	D	G	R	L	R	V	T	E	R	P	G	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)							T									S															T		T	T							G	G	G	T	T	B	S			S				S	S				S	S						S	S	S	B	T
	.	.	.	.	.
Sequence	G	L	V	Y	R
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)