Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	K	Y	I	G	A	H	V	S	A	A	G	G	L	A	N	A	A	I	R	A	A	E	I	D	A	T	A	F	A	L	F	T	K	N	Q	R	Q	W	R	A	A	P	L	T	T	Q	T	I	D	E	F	K	A	A	C	E	K	Y	H
Secondary structure
SS confidence
Disorder		?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		Y	T	S	A	Q	I	L	P	H	D	S	Y	L	I	N	L	G	H	P	V	T	E	A	L	E	K	S	R	D	A	F	I	D	E	M	Q	R	C	E	Q	L	G	L	S	L	L	N	F	H	P	G	S	H	L	M	Q	I	S	E	E
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		D	C	L	A	R	I	A	E	S	I	N	I	A	L	D	K	T	Q	G	V	T	A	V	I	E	N	T	A	G	Q	G	S	N	L	G	F	K	F	E	H	L	A	A	I	I	D	G	V	E	D	K	S	R	V	G	V	C	I	D	T
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		C	H	A	F	A	A	G	Y	D	L	R	T	P	A	E	C	E	K	T	F	A	D	F	A	R	T	V	G	F	K	Y	L	R	G	M	H	L	N	D	A	K	S	T	F	G	S	R	V	D	R	H	H	S	L	G	E	G	N	I	G
Secondary structure
SS confidence
Disorder																																														?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.
Sequence		H	D	A	F	R	W	I	M	Q	D	D	R	F	D	G	I	P	L	I	L	E	T	I	N	P	D	I	W	A	E	E	I	A	W	L	K	A	Q	Q	T	E	K	A	V	A
Secondary structure
SS confidence
Disorder																																									?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1qtw chain A Region: 1 - 285 Aligned: 285 Modelled: 285 Confidence: 100.0% Identity: 100% Fold: TIM beta/alpha-barrel Superfamily: Xylose isomerase-like Family: Endonuclease IV Phyre2 PDB 2x7v chain A Region: 1 - 285 Aligned: 284 Modelled: 285 Confidence: 100.0% Identity: 32% PDB header:hydrolase Chain: A: PDB Molecule:probable endonuclease 4; PDBTitle: crystal structure of thermotoga maritima endonuclease iv in2 the presence of zinc Phyre2 PDB 1xp3 chain A domain 1 Region: 1 - 284 Aligned: 279 Modelled: 283 Confidence: 100.0% Identity: 30% Fold: TIM beta/alpha-barrel Superfamily: Xylose isomerase-like Family: Endonuclease IV Phyre2 PDB 3aam chain A Region: 2 - 282 Aligned: 266 Modelled: 281 Confidence: 100.0% Identity: 35% PDB header:hydrolase Chain: A: PDB Molecule:endonuclease iv; PDBTitle: crystal structure of endonuclease iv from thermus thermophilus hb8 Phyre2 PDB 3qxb chain B Region: 2 - 276 Aligned: 266 Modelled: 271 Confidence: 100.0% Identity: 10% PDB header:isomerase Chain: B: PDB Molecule:putative xylose isomerase; PDBTitle: crystal structure of a putative xylose isomerase (yp_426450.1) from2 rhodospirillum rubrum atcc 11170 at 1.90 a resolution Phyre2 PDB 2hk1 chain D Region: 2 - 279 Aligned: 250 Modelled: 277 Confidence: 100.0% Identity: 16% PDB header:isomerase Chain: D: PDB Molecule:d-psicose 3-epimerase; PDBTitle: crystal structure of d-psicose 3-epimerase (dpease) in the presence of2 d-fructose Phyre2 PDB 2qw5 chain B Region: 14 - 283 Aligned: 251 Modelled: 270 Confidence: 100.0% Identity: 16% PDB header:isomerase Chain: B: PDB Molecule:xylose isomerase-like tim barrel; PDBTitle: crystal structure of a putative sugar phosphate isomerase/epimerase2 (ava4194) from anabaena variabilis atcc 29413 at 1.78 a resolution Phyre2 PDB 3cqk chain B Region: 3 - 284 Aligned: 264 Modelled: 282 Confidence: 100.0% Identity: 11% PDB header:isomerase Chain: B: PDB Molecule:l-ribulose-5-phosphate 3-epimerase ulae; PDBTitle: crystal structure of l-xylulose-5-phosphate 3-epimerase ulae (form b)2 complex with zn2+ and sulfate Phyre2 PDB 1i60 chain A Region: 2 - 283 Aligned: 262 Modelled: 279 Confidence: 100.0% Identity: 15% Fold: TIM beta/alpha-barrel Superfamily: Xylose isomerase-like Family: IolI-like Phyre2 PDB 2ou4 chain C Region: 2 - 279 Aligned: 250 Modelled: 268 Confidence: 100.0% Identity: 16% PDB header:isomerase Chain: C: PDB Molecule:d-tagatose 3-epimerase; PDBTitle: crystal structure of d-tagatose 3-epimerase from2 pseudomonas cichorii Phyre2 PDB 3kws chain B Region: 3 - 282 Aligned: 250 Modelled: 268 Confidence: 100.0% Identity: 12% PDB header:isomerase Chain: B: PDB Molecule:putative sugar isomerase; PDBTitle: crystal structure of putative sugar isomerase (yp_001305149.1) from2 parabacteroides distasonis atcc 8503 at 1.68 a resolution Phyre2 PDB 3ktc chain B Region: 13 - 280 Aligned: 245 Modelled: 264 Confidence: 100.0% Identity: 16% PDB header:isomerase Chain: B: PDB Molecule:xylose isomerase; PDBTitle: crystal structure of putative sugar isomerase (yp_050048.1) from2 erwinia carotovora atroseptica scri1043 at 1.54 a resolution Phyre2 PDB 2zvr chain A Region: 1 - 279 Aligned: 249 Modelled: 270 Confidence: 100.0% Identity: 16% PDB header:isomerase Chain: A: PDB Molecule:uncharacterized protein tm_0416; PDBTitle: crystal structure of a d-tagatose 3-epimerase-related2 protein from thermotoga maritima Phyre2 PDB 2zds chain B Region: 2 - 277 Aligned: 261 Modelled: 270 Confidence: 100.0% Identity: 18% PDB header:dna binding protein Chain: B: PDB Molecule:putative dna-binding protein; PDBTitle: crystal structure of sco6571 from streptomyces coelicolor2 a3(2) Phyre2 PDB 3ju2 chain A Region: 1 - 280 Aligned: 255 Modelled: 272 Confidence: 100.0% Identity: 16% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein smc04130; PDBTitle: crystal structure of protein smc04130 from sinorhizobium meliloti 1021 Phyre2 PDB 1k77 chain A Region: 13 - 280 Aligned: 237 Modelled: 268 Confidence: 100.0% Identity: 16% Fold: TIM beta/alpha-barrel Superfamily: Xylose isomerase-like Family: Hypothetical protein YgbM (EC1530) Phyre2 PDB 3dx5 chain A Region: 2 - 277 Aligned: 252 Modelled: 275 Confidence: 100.0% Identity: 13% PDB header:lyase Chain: A: PDB Molecule:uncharacterized protein asbf; PDBTitle: crystal structure of the probable 3-dhs dehydratase asbf involved in2 the petrobactin synthesis from bacillus anthracis Phyre2 PDB 3ngf chain A Region: 1 - 281 Aligned: 248 Modelled: 281 Confidence: 100.0% Identity: 14% PDB header:isomerase Chain: A: PDB Molecule:ap endonuclease, family 2; PDBTitle: crystal structure of ap endonuclease, family 2 from brucella2 melitensis Phyre2 PDB 3cny chain A Region: 3 - 281 Aligned: 245 Modelled: 261 Confidence: 100.0% Identity: 13% PDB header:biosynthetic protein Chain: A: PDB Molecule:inositol catabolism protein iole; PDBTitle: crystal structure of a putative inositol catabolism protein iole2 (iole, lp_3607) from lactobacillus plantarum wcfs1 at 1.85 a3 resolution Phyre2 PDB 3obe chain B Region: 10 - 277 Aligned: 241 Modelled: 257 Confidence: 100.0% Identity: 13% PDB header:isomerase Chain: B: PDB Molecule:sugar phosphate isomerase/epimerase; PDBTitle: crystal structure of a sugar phosphate isomerase/epimerase (bdi_3400)2 from parabacteroides distasonis atcc 8503 at 1.70 a resolution Phyre2 1 d1qtwa_ 2 c2x7vA_ 3 d1xp3a1 4 c3aamA_ 5 c3qxbB_ 6 c2hk1D_ 7 c2qw5B_ 8 c3cqkB_ 9 d1i60a_ 10 c2ou4C_ 11 c3kwsB_ 12 c3ktcB_ 13 c2zvrA_ 14 c2zdsB_ 15 c3ju2A_ 16 d1k77a_ 17 c3dx5A_ 18 c3ngfA_ 19 c3cnyA_ 20 c3obeB_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265 266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283 284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301 302 303 304 305 306 307 308 309 310 311 312 313 314 315 316 317 318 319 320 321 322 323 324 325 326

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1qtwa_ 100.0 100 Fold:TIM beta/alpha-barrel Superfamily:Xylose isomerase-like Family:Endonuclease IV 2 c2x7vA_ 100.0 32 PDB header:hydrolase Chain: A: PDB Molecule:probable endonuclease 4; PDBTitle: crystal structure of thermotoga maritima endonuclease iv in2 the presence of zinc 3 d1xp3a1 100.0 30 Fold:TIM beta/alpha-barrel Superfamily:Xylose isomerase-like Family:Endonuclease IV 4 c3aamA_ 100.0 35 PDB header:hydrolase Chain: A: PDB Molecule:endonuclease iv; PDBTitle: crystal structure of endonuclease iv from thermus thermophilus hb8 5 c3qxbB_ 100.0 10 PDB header:isomerase Chain: B: PDB Molecule:putative xylose isomerase; PDBTitle: crystal structure of a putative xylose isomerase (yp_426450.1) from2 rhodospirillum rubrum atcc 11170 at 1.90 a resolution 6 c2hk1D_ 100.0 16 PDB header:isomerase Chain: D: PDB Molecule:d-psicose 3-epimerase; PDBTitle: crystal structure of d-psicose 3-epimerase (dpease) in the presence of2 d-fructose 7 c2qw5B_ 100.0 16 PDB header:isomerase Chain: B: PDB Molecule:xylose isomerase-like tim barrel; PDBTitle: crystal structure of a putative sugar phosphate isomerase/epimerase2 (ava4194) from anabaena variabilis atcc 29413 at 1.78 a resolution 8 c3cqkB_ 100.0 11 PDB header:isomerase Chain: B: PDB Molecule:l-ribulose-5-phosphate 3-epimerase ulae; PDBTitle: crystal structure of l-xylulose-5-phosphate 3-epimerase ulae (form b)2 complex with zn2+ and sulfate 9 d1i60a_ 100.0 15 Fold:TIM beta/alpha-barrel Superfamily:Xylose isomerase-like Family:IolI-like 10 c2ou4C_ 100.0 16 PDB header:isomerase Chain: C: PDB Molecule:d-tagatose 3-epimerase; PDBTitle: crystal structure of d-tagatose 3-epimerase from2 pseudomonas cichorii 11 c3kwsB_ 100.0 12 PDB header:isomerase Chain: B: PDB Molecule:putative sugar isomerase; PDBTitle: crystal structure of putative sugar isomerase (yp_001305149.1) from2 parabacteroides distasonis atcc 8503 at 1.68 a resolution 12 c3ktcB_ 100.0 16 PDB header:isomerase Chain: B: PDB Molecule:xylose isomerase; PDBTitle: crystal structure of putative sugar isomerase (yp_050048.1) from2 erwinia carotovora atroseptica scri1043 at 1.54 a resolution 13 c2zvrA_ 100.0 16 PDB header:isomerase Chain: A: PDB Molecule:uncharacterized protein tm_0416; PDBTitle: crystal structure of a d-tagatose 3-epimerase-related2 protein from thermotoga maritima 14 c2zdsB_ 100.0 18 PDB header:dna binding protein Chain: B: PDB Molecule:putative dna-binding protein; PDBTitle: crystal structure of sco6571 from streptomyces coelicolor2 a3(2) 15 c3ju2A_ 100.0 16 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein smc04130; PDBTitle: crystal structure of protein smc04130 from sinorhizobium meliloti 1021 16 d1k77a_ 100.0 16 Fold:TIM beta/alpha-barrel Superfamily:Xylose isomerase-like Family:Hypothetical protein YgbM (EC1530) 17 c3dx5A_ 100.0 13 PDB header:lyase Chain: A: PDB Molecule:uncharacterized protein asbf; PDBTitle: crystal structure of the probable 3-dhs dehydratase asbf involved in2 the petrobactin synthesis from bacillus anthracis 18 c3ngfA_ 100.0 14 PDB header:isomerase Chain: A: PDB Molecule:ap endonuclease, family 2; PDBTitle: crystal structure of ap endonuclease, family 2 from brucella2 melitensis 19 c3cnyA_ 100.0 13 PDB header:biosynthetic protein Chain: A: PDB Molecule:inositol catabolism protein iole; PDBTitle: crystal structure of a putative inositol catabolism protein iole2 (iole, lp_3607) from lactobacillus plantarum wcfs1 at 1.85 a3 resolution 20 c3obeB_ 100.0 13 PDB header:isomerase Chain: B: PDB Molecule:sugar phosphate isomerase/epimerase; PDBTitle: crystal structure of a sugar phosphate isomerase/epimerase (bdi_3400)2 from parabacteroides distasonis atcc 8503 at 1.70 a resolution 21 c3l23A_ not modelled 100.0 13 PDB header:isomerase Chain: A: PDB Molecule:sugar phosphate isomerase/epimerase; PDBTitle: crystal structure of sugar phosphate isomerase/epimerase2 (yp_001303399.1) from parabacteroides distasonis atcc 8503 at 1.70 a3 resolution 22 d2g0wa1 not modelled 100.0 13 Fold:TIM beta/alpha-barrel Superfamily:Xylose isomerase-like Family:IolI-like 23 d2q02a1 not modelled 100.0 13 Fold:TIM beta/alpha-barrel Superfamily:Xylose isomerase-like Family:IolI-like 24 c3lmzA_ not modelled 100.0 17 PDB header:isomerase Chain: A: PDB Molecule:putative sugar isomerase; PDBTitle: crystal structure of putative sugar isomerase. (yp_001305105.1) from2 parabacteroides distasonis atcc 8503 at 1.44 a resolution 25 c3p6lA_ not modelled 100.0 15 PDB header:isomerase Chain: A: PDB Molecule:sugar phosphate isomerase/epimerase; PDBTitle: crystal structure of a sugar phosphate isomerase/epimerase (bdi_1903)2 from parabacteroides distasonis atcc 8503 at 1.85 a resolution 26 d1xima_ not modelled 100.0 18 Fold:TIM beta/alpha-barrel Superfamily:Xylose isomerase-like Family:Xylose isomerase 27 d1yx1a1 not modelled 100.0 15 Fold:TIM beta/alpha-barrel Superfamily:Xylose isomerase-like Family:KguE-like 28 d1tz9a_ not modelled 100.0 13 Fold:TIM beta/alpha-barrel Superfamily:Xylose isomerase-like Family:UxuA-like 29 d1muwa_ not modelled 100.0 16 Fold:TIM beta/alpha-barrel Superfamily:Xylose isomerase-like Family:Xylose isomerase 30 d1qt1a_ not modelled 100.0 18 Fold:TIM beta/alpha-barrel Superfamily:Xylose isomerase-like Family:Xylose isomerase 31 d2glka1 not modelled 100.0 16 Fold:TIM beta/alpha-barrel Superfamily:Xylose isomerase-like Family:Xylose isomerase 32 d1bxba_ not modelled 99.9 17 Fold:TIM beta/alpha-barrel Superfamily:Xylose isomerase-like Family:Xylose isomerase 33 d1bxca_ not modelled 99.9 16 Fold:TIM beta/alpha-barrel Superfamily:Xylose isomerase-like Family:Xylose isomerase 34 c3bdkB_ not modelled 99.9 14 PDB header:lyase Chain: B: PDB Molecule:d-mannonate dehydratase; PDBTitle: crystal structure of streptococcus suis mannonate2 dehydratase complexed with substrate analogue 35 d1xlma_ not modelled 99.9 16 Fold:TIM beta/alpha-barrel Superfamily:Xylose isomerase-like Family:Xylose isomerase 36 c3bzjA_ not modelled 99.9 16 PDB header:hydrolase Chain: A: PDB Molecule:uv endonuclease; PDBTitle: uvde k229l 37 d1a0ea_ not modelled 99.7 11 Fold:TIM beta/alpha-barrel Superfamily:Xylose isomerase-like Family:Xylose isomerase 38 d1a0da_ not modelled 99.7 11 Fold:TIM beta/alpha-barrel Superfamily:Xylose isomerase-like Family:Xylose isomerase 39 c2i56A_ not modelled 99.7 15 PDB header:isomerase, metal-binding protein Chain: A: PDB Molecule:l-rhamnose isomerase; PDBTitle: crystal structure of l-rhamnose isomerase from pseudomonas2 stutzeri with l-rhamnose 40 d1a0ca_ not modelled 99.7 14 Fold:TIM beta/alpha-barrel Superfamily:Xylose isomerase-like Family:Xylose isomerase 41 c3bwwA_ not modelled 99.0 16 PDB header:metal binding protein Chain: A: PDB Molecule:protein of unknown function duf692/cog3220; PDBTitle: crystal structure of a duf692 family protein (hs_1138) from2 haemophilus somnus 129pt at 2.20 a resolution 42 d1d8wa_ not modelled 98.4 12 Fold:TIM beta/alpha-barrel Superfamily:Xylose isomerase-like Family:L-rhamnose isomerase 43 c3p14C_ not modelled 98.1 14 PDB header:isomerase Chain: C: PDB Molecule:l-rhamnose isomerase; PDBTitle: crystal structure of l-rhamnose isomerase with a novel high thermo-2 stability from bacillus halodurans 44 d1qwga_ not modelled 97.5 11 Fold:TIM beta/alpha-barrel Superfamily:(2r)-phospho-3-sulfolactate synthase ComA Family:(2r)-phospho-3-sulfolactate synthase ComA 45 c1rr2A_ not modelled 96.8 10 PDB header:transferase Chain: A: PDB Molecule:transcarboxylase 5s subunit; PDBTitle: propionibacterium shermanii transcarboxylase 5s subunit bound to 2-2 ketobutyric acid 46 c2ftpA_ not modelled 96.2 15 PDB header:lyase Chain: A: PDB Molecule:hydroxymethylglutaryl-coa lyase; PDBTitle: crystal structure of hydroxymethylglutaryl-coa lyase from pseudomonas2 aeruginosa 47 c2nx9B_ not modelled 95.7 12 PDB header:lyase Chain: B: PDB Molecule:oxaloacetate decarboxylase 2, subunit alpha; PDBTitle: crystal structure of the carboxyltransferase domain of the2 oxaloacetate decarboxylase na+ pump from vibrio cholerae 48 c3bg3B_ not modelled 95.5 11 PDB header:ligase Chain: B: PDB Molecule:pyruvate carboxylase, mitochondrial; PDBTitle: crystal structure of human pyruvate carboxylase (missing2 the biotin carboxylase domain at the n-terminus) 49 c1ydoC_ not modelled 95.3 15 PDB header:lyase Chain: C: PDB Molecule:hmg-coa lyase; PDBTitle: crystal structure of the bacillis subtilis hmg-coa lyase, northeast2 structural genomics target sr181. 50 d1rqba2 not modelled 94.5 14 Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:HMGL-like 51 d1u83a_ not modelled 93.6 10 Fold:TIM beta/alpha-barrel Superfamily:(2r)-phospho-3-sulfolactate synthase ComA Family:(2r)-phospho-3-sulfolactate synthase ComA 52 c1u83A_ not modelled 93.6 10 PDB header:lyase Chain: A: PDB Molecule:phosphosulfolactate synthase; PDBTitle: psl synthase from bacillus subtilis 53 c2zyfA_ not modelled 93.2 13 PDB header:transferase Chain: A: PDB Molecule:homocitrate synthase; PDBTitle: crystal structure of homocitrate synthase from thermus thermophilus2 complexed with magnesuim ion and alpha-ketoglutarate 54 c3hf3A_ not modelled 93.0 14 PDB header:oxidoreductase Chain: A: PDB Molecule:chromate reductase; PDBTitle: old yellow enzyme from thermus scotoductus sa-01 55 c3btnA_ not modelled 92.8 11 PDB header:biosynthetic protein Chain: A: PDB Molecule:antizyme inhibitor 1; PDBTitle: crystal structure of antizyme inhibitor, an ornithine2 decarboxylase homologous protein 56 c2i2xO_ not modelled 92.6 16 PDB header:transferase Chain: O: PDB Molecule:methyltransferase 1; PDBTitle: crystal structure of methanol:cobalamin methyltransferase complex2 mtabc from methanosarcina barkeri 57 c2cw6B_ not modelled 92.6 13 PDB header:lyase Chain: B: PDB Molecule:hydroxymethylglutaryl-coa lyase, mitochondrial; PDBTitle: crystal structure of human hmg-coa lyase: insights into2 catalysis and the molecular basis for3 hydroxymethylglutaric aciduria 58 c1ydnA_ not modelled 92.1 10 PDB header:lyase Chain: A: PDB Molecule:hydroxymethylglutaryl-coa lyase; PDBTitle: crystal structure of the hmg-coa lyase from brucella melitensis,2 northeast structural genomics target lr35. 59 c3ogrA_ not modelled 92.1 8 PDB header:hydrolase Chain: A: PDB Molecule:beta-galactosidase; PDBTitle: complex structure of beta-galactosidase from trichoderma reesei with2 galactose 60 d1z41a1 not modelled 91.9 12 Fold:TIM beta/alpha-barrel Superfamily:FMN-linked oxidoreductases Family:FMN-linked oxidoreductases 61 c2dh3A_ not modelled 91.8 15 PDB header:transport protein, signaling protein Chain: A: PDB Molecule:4f2 cell-surface antigen heavy chain; PDBTitle: crystal structure of human ed-4f2hc 62 c3ivuB_ not modelled 91.1 11 PDB header:transferase Chain: B: PDB Molecule:homocitrate synthase, mitochondrial; PDBTitle: homocitrate synthase lys4 bound to 2-og 63 d1f3ta2 not modelled 90.6 10 Fold:TIM beta/alpha-barrel Superfamily:PLP-binding barrel Family:Alanine racemase-like, N-terminal domain 64 c3gk0H_ not modelled 90.4 12 PDB header:transferase Chain: H: PDB Molecule:pyridoxine 5'-phosphate synthase; PDBTitle: crystal structure of pyridoxal phosphate biosynthetic2 protein from burkholderia pseudomallei 65 d1ps9a1 not modelled 89.9 16 Fold:TIM beta/alpha-barrel Superfamily:FMN-linked oxidoreductases Family:FMN-linked oxidoreductases 66 c1gcyA_ not modelled 89.6 10 PDB header:hydrolase Chain: A: PDB Molecule:glucan 1,4-alpha-maltotetrahydrolase; PDBTitle: high resolution crystal structure of maltotetraose-forming2 exo-amylase 67 c1d7kB_ not modelled 88.9 15 PDB header:lyase Chain: B: PDB Molecule:human ornithine decarboxylase; PDBTitle: crystal structure of human ornithine decarboxylase at 2.12 angstroms resolution 68 c2hmaA_ not modelled 88.5 16 PDB header:transferase Chain: A: PDB Molecule:probable trna (5-methylaminomethyl-2-thiouridylate)- PDBTitle: the crystal structure of trna (5-methylaminomethyl-2-thiouridylate)-2 methyltransferase trmu from streptococcus pneumoniae 69 d1d7ka2 not modelled 88.3 11 Fold:TIM beta/alpha-barrel Superfamily:PLP-binding barrel Family:Alanine racemase-like, N-terminal domain 70 d1x7fa2 not modelled 87.9 12 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:Outer surface protein, N-terminal domain 71 c2h90A_ not modelled 86.9 12 PDB header:oxidoreductase Chain: A: PDB Molecule:xenobiotic reductase a; PDBTitle: xenobiotic reductase a in complex with coumarin 72 d1ujpa_ not modelled 85.9 9 Fold:TIM beta/alpha-barrel Superfamily:Ribulose-phoshate binding barrel Family:Tryptophan biosynthesis enzymes 73 c1j0yD_ not modelled 85.2 11 PDB header:hydrolase Chain: D: PDB Molecule:beta-amylase; PDBTitle: beta-amylase from bacillus cereus var. mycoides in complex2 with glucose 74 d1vyra_ not modelled 85.0 12 Fold:TIM beta/alpha-barrel Superfamily:FMN-linked oxidoreductases Family:FMN-linked oxidoreductases 75 c1sr9A_ not modelled 85.0 12 PDB header:transferase Chain: A: PDB Molecule:2-isopropylmalate synthase; PDBTitle: crystal structure of leua from mycobacterium tuberculosis 76 d7odca2 not modelled 84.5 11 Fold:TIM beta/alpha-barrel Superfamily:PLP-binding barrel Family:Alanine racemase-like, N-terminal domain 77 c2aaaA_ not modelled 84.4 9 PDB header:glycosidase Chain: A: PDB Molecule:alpha-amylase; PDBTitle: calcium binding in alpha-amylases: an x-ray diffraction2 study at 2.1 angstroms resolution of two enzymes from3 aspergillus 78 d1e43a2 not modelled 84.3 22 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:Amylase, catalytic domain 79 c2on3A_ not modelled 83.7 11 PDB header:lyase Chain: A: PDB Molecule:ornithine decarboxylase; PDBTitle: a structural insight into the inhibition of human and2 leishmania donovani ornithine decarboxylases by 3-aminooxy-3 1-aminopropane 80 d1rh9a1 not modelled 83.5 14 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:beta-glycanases 81 c2xioA_ not modelled 83.2 12 PDB header:hydrolase Chain: A: PDB Molecule:putative deoxyribonuclease tatdn1; PDBTitle: structure of putative deoxyribonuclease tatdn1 isoform a 82 c3aysA_ not modelled 82.0 9 PDB header:hydrolase Chain: A: PDB Molecule:endoglucanase; PDBTitle: gh5 endoglucanase from a ruminal fungus in complex with cellotriose 83 c3u7vA_ not modelled 81.9 7 PDB header:hydrolase Chain: A: PDB Molecule:beta-galactosidase; PDBTitle: the structure of a putative beta-galactosidase from caulobacter2 crescentus cb15. 84 d1vema2 not modelled 81.7 11 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:Amylase, catalytic domain 85 c2ekcA_ not modelled 81.6 21 PDB header:lyase Chain: A: PDB Molecule:tryptophan synthase alpha chain; PDBTitle: structural study of project id aq_1548 from aquifex aeolicus vf5 86 c1ud8A_ not modelled 81.5 17 PDB header:hydrolase Chain: A: PDB Molecule:amylase; PDBTitle: crystal structure of amyk38 with lithium ion 87 c1qhoA_ not modelled 80.5 15 PDB header:hydrolase Chain: A: PDB Molecule:alpha-amylase; PDBTitle: five-domain alpha-amylase from bacillus stearothermophilus,2 maltose/acarbose complex 88 d1nvma2 not modelled 79.5 11 Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:HMGL-like 89 c2taaA_ not modelled 79.1 11 PDB header:hydrolase (o-glycosyl) Chain: A: PDB Molecule:taka-amylase a; PDBTitle: structure and possible catalytic residues of taka-amylase a 90 c2by0A_ not modelled 79.1 14 PDB header:hydrolase Chain: A: PDB Molecule:maltooligosyltrehalose trehalohydrolase; PDBTitle: is radiation damage dependent on the dose-rate used during2 macromolecular crystallography data collection 91 d1q45a_ not modelled 79.0 18 Fold:TIM beta/alpha-barrel Superfamily:FMN-linked oxidoreductases Family:FMN-linked oxidoreductases 92 c3b0vD_ not modelled 79.0 17 PDB header:oxidoreductase/rna Chain: D: PDB Molecule:trna-dihydrouridine synthase; PDBTitle: trna-dihydrouridine synthase from thermus thermophilus in complex with2 trna 93 c1xc6A_ not modelled 78.8 10 PDB header:hydrolase Chain: A: PDB Molecule:beta-galactosidase; PDBTitle: native structure of beta-galactosidase from penicillium sp. in complex2 with galactose 94 c1x7fA_ not modelled 78.6 14 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:outer surface protein; PDBTitle: crystal structure of an uncharacterized b. cereus protein 95 c3dhuC_ not modelled 78.3 13 PDB header:hydrolase Chain: C: PDB Molecule:alpha-amylase; PDBTitle: crystal structure of an alpha-amylase from lactobacillus2 plantarum 96 d1oyaa_ not modelled 78.3 16 Fold:TIM beta/alpha-barrel Superfamily:FMN-linked oxidoreductases Family:FMN-linked oxidoreductases 97 c2bdqA_ not modelled 77.9 14 PDB header:metal transport Chain: A: PDB Molecule:copper homeostasis protein cutc; PDBTitle: crystal structure of the putative copper homeostasis2 protein cutc from streptococcus agalactiae, northeast3 strucural genomics target sar15. 98 c3mi6A_ not modelled 77.7 9 PDB header:hydrolase Chain: A: PDB Molecule:alpha-galactosidase; PDBTitle: crystal structure of the alpha-galactosidase from lactobacillus2 brevis, northeast structural genomics consortium target lbr11. 99 d1gjwa2 not modelled 77.3 11 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:Amylase, catalytic domain 100 d2bhua3 not modelled 77.3 14 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:Amylase, catalytic domain 101 c1bagA_ not modelled 77.2 18 PDB header:alpha-amylase Chain: A: PDB Molecule:alpha-1,4-glucan-4-glucanohydrolase; PDBTitle: alpha-amylase from bacillus subtilis complexed with2 maltopentaose 102 c3thaB_ not modelled 77.0 19 PDB header:lyase Chain: B: PDB Molecule:tryptophan synthase alpha chain; PDBTitle: tryptophan synthase subunit alpha from campylobacter jejuni. 103 d1avaa2 not modelled 76.2 12 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:Amylase, catalytic domain 104 d1icpa_ not modelled 75.1 18 Fold:TIM beta/alpha-barrel Superfamily:FMN-linked oxidoreductases Family:FMN-linked oxidoreductases 105 c3l5aA_ not modelled 74.6 14 PDB header:oxidoreductase Chain: A: PDB Molecule:nadh/flavin oxidoreductase/nadh oxidase; PDBTitle: crystal structure of a probable nadh-dependent flavin oxidoreductase2 from staphylococcus aureus 106 c3ewbX_ not modelled 74.5 13 PDB header:transferase Chain: X: PDB Molecule:2-isopropylmalate synthase; PDBTitle: crystal structure of n-terminal domain of putative 2-2 isopropylmalate synthase from listeria monocytogenes 107 c2qjhH_ not modelled 74.3 13 PDB header:lyase Chain: H: PDB Molecule:putative aldolase mj0400; PDBTitle: m. jannaschii adh synthase covalently bound to2 dihydroxyacetone phosphate 108 c3lciA_ not modelled 74.2 8 PDB header:lyase Chain: A: PDB Molecule:n-acetylneuraminate lyase; PDBTitle: the d-sialic acid aldolase mutant v251w 109 d1ua7a2 not modelled 74.0 18 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:Amylase, catalytic domain 110 c1njjC_ not modelled 73.7 11 PDB header:lyase Chain: C: PDB Molecule:ornithine decarboxylase; PDBTitle: crystal structure determination of t. brucei ornithine2 decarboxylase bound to d-ornithine and to g418 111 c1jd7A_ not modelled 73.5 8 PDB header:hydrolase Chain: A: PDB Molecule:alpha-amylase; PDBTitle: crystal structure analysis of the mutant k300r of2 pseudoalteromonas haloplanctis alpha-amylase 112 d1hx0a2 not modelled 73.3 2 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:Amylase, catalytic domain 113 d1vjia_ not modelled 73.0 23 Fold:TIM beta/alpha-barrel Superfamily:FMN-linked oxidoreductases Family:FMN-linked oxidoreductases 114 c2derA_ not modelled 73.0 20 PDB header:transferase/rna Chain: A: PDB Molecule:trna-specific 2-thiouridylase mnma; PDBTitle: cocrystal structure of an rna sulfuration enzyme mnma and2 trna-glu in the initial trna binding state 115 c3qc3B_ not modelled 72.8 11 PDB header:isomerase Chain: B: PDB Molecule:d-ribulose-5-phosphate-3-epimerase; PDBTitle: crystal structure of a d-ribulose-5-phosphate-3-epimerase (np_954699)2 from homo sapiens at 2.20 a resolution 116 c1ehaA_ not modelled 72.8 9 PDB header:hydrolase Chain: A: PDB Molecule:glycosyltrehalose trehalohydrolase; PDBTitle: crystal structure of glycosyltrehalose trehalohydrolase2 from sulfolobus solfataricus 117 d1hvxa2 not modelled 72.4 19 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:Amylase, catalytic domain 118 d1djqa1 not modelled 72.4 13 Fold:TIM beta/alpha-barrel Superfamily:FMN-linked oxidoreductases Family:FMN-linked oxidoreductases 119 c3k8kB_ not modelled 71.7 9 PDB header:membrane protein Chain: B: PDB Molecule:alpha-amylase, susg; PDBTitle: crystal structure of susg 120 c3eegB_ not modelled 71.5 13 PDB header:transferase Chain: B: PDB Molecule:2-isopropylmalate synthase; PDBTitle: crystal structure of a 2-isopropylmalate synthase from2 cytophaga hutchinsonii

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0