PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: d7odca2

Fold library id	Fold	Superfamily	Family
d7odca2	TIM beta/alpha-barrel	PLP-binding barrel	Alanine racemase-like, N-terminal domain

Links to external resources
Added to library: Tue Mar 16 14:12:12 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence D L G D I L K K H L R W L K A L P R V T P F Y A V K C N D S R A I V S T L A A I G T G F D C A S K T E I Q L V Q G L G V P A E R V I Y A N P

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T G G G
T
S T T
G G G
S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence C K Q V S Q I K Y A A S N G V Q M M T F D S E I E L M K V A R A H P K A K L V L R I A T K F G A T L K T S R L L L E R A K E L N I D V I G V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S
T T
S
T T
B
B
T T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence S F H V G S G C T D P D T F V Q A V S D A R C V F D M A T E V G F S M H L L D I G G G F P G S E D T K L K F E E I T S V I N P A L D K Y F P

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S
T T
S S S S S S
S

. . . . . . . . . 220 . . . . . . . . .

Sequence S D S G V R I I A E P G R Y Y V A S A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) G G G T
S T T

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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Phyre2 is part of Genome3D

	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	D	L	G	D	I	L	K	K	H	L	R	W	L	K	A	L	P	R	V	T	P	F	Y	A	V	K	C	N	D	S	R	A	I	V	S	T	L	A	A	I	G	T	G	F	D	C	A	S	K	T	E	I	Q	L	V	Q	G	L	G	V	P	A	E	R	V	I	Y	A	N	P
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																	T	T							G	G	G														T							S										T	T			G	G	G						S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	C	K	Q	V	S	Q	I	K	Y	A	A	S	N	G	V	Q	M	M	T	F	D	S	E	I	E	L	M	K	V	A	R	A	H	P	K	A	K	L	V	L	R	I	A	T	K	F	G	A	T	L	K	T	S	R	L	L	L	E	R	A	K	E	L	N	I	D	V	I	G	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S												T	T								S												T	T							B						B															T	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	S	F	H	V	G	S	G	C	T	D	P	D	T	F	V	Q	A	V	S	D	A	R	C	V	F	D	M	A	T	E	V	G	F	S	M	H	L	L	D	I	G	G	G	F	P	G	S	E	D	T	K	L	K	F	E	E	I	T	S	V	I	N	P	A	L	D	K	Y	F	P
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)						S	S				T																					T															S	S	S	S	S	S																	S
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.
Sequence	S	D	S	G	V	R	I	I	A	E	P	G	R	Y	Y	V	A	S	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	G	G	G	T								S					T	T