PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c3lmzA_

Fold library id	PDB Header	Molecule	Title
c3lmzA_	PDB header: isomerase	Chain: A: PDB Molecule: putative sugar isomerase;	PDBTitle: crystal structure of putative sugar isomerase.2 (yp_001305105.1) from parabacteroides distasonis atcc 85033 at 1.44 a resolution

Links to external resources
Added to library: Sat Aug 28 15:47:50 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence V K P K A P K A V N P F H L G X A G Y T F V N F D L D T T L K T L E R L D I H Y L C I K D F H L P L N S T D E Q I R A F H D K C A A H K V T

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S
G G G G T T S
T T
T T T S
T T
T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence G Y A V G P I Y X K S E E E I D R A F D Y A K R V G V K L I V G V P N Y E L L P Y V D K K V K E Y D F H Y A I H L H G P D I K T Y P D A T D

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S T
S
G G G T
T T
S S S
S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence V W V H T K D L D P R I G X C L D V G H D L R N G C D P V A D L K K Y H T R V F D X H I K D V T D S S K A G V G I E I G R G K I D F P A L I

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T S
T T T T
G G G
S
S S T T
T T S S S

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 .

Sequence R X X R E V N Y T G X C S L E Y E K D X K D P F L G I A E S I G Y F K A V S D L T

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
S
S S T T S

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	V	K	P	K	A	P	K	A	V	N	P	F	H	L	G	X	A	G	Y	T	F	V	N	F	D	L	D	T	T	L	K	T	L	E	R	L	D	I	H	Y	L	C	I	K	D	F	H	L	P	L	N	S	T	D	E	Q	I	R	A	F	H	D	K	C	A	A	H	K	V	T
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)											S	S						G	G	G	G	T	T	S												T	T								T	T	T	S		T	T																T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	G	Y	A	V	G	P	I	Y	X	K	S	E	E	E	I	D	R	A	F	D	Y	A	K	R	V	G	V	K	L	I	V	G	V	P	N	Y	E	L	L	P	Y	V	D	K	K	V	K	E	Y	D	F	H	Y	A	I	H	L	H	G	P	D	I	K	T	Y	P	D	A	T	D
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)											S															T		S								G	G	G												T										T	T		S	S	S		S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	V	W	V	H	T	K	D	L	D	P	R	I	G	X	C	L	D	V	G	H	D	L	R	N	G	C	D	P	V	A	D	L	K	K	Y	H	T	R	V	F	D	X	H	I	K	D	V	T	D	S	S	K	A	G	V	G	I	E	I	G	R	G	K	I	D	F	P	A	L	I
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)						T	T	S		T	T													T	T											G	G	G										S		S	S	T	T						T	T	S	S	S
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.
Sequence	R	X	X	R	E	V	N	Y	T	G	X	C	S	L	E	Y	E	K	D	X	K	D	P	F	L	G	I	A	E	S	I	G	Y	F	K	A	V	S	D	L	T
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)						T	T			S								S	S	T	T	S