PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c3bdkB_

Fold library id	PDB Header	Molecule	Title
c3bdkB_	PDB header: lyase	Chain: B: PDB Molecule: d-mannonate dehydratase;	PDBTitle: crystal structure of streptococcus suis mannonate2 dehydratase complexed with substrate analogue

Links to external resources
Added to library: Tue Mar 16 13:06:09 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence G S H M K M S F R W Y G K K D P V T L E E I K A I P G M Q G I V T A V Y D V P V G Q A W P L E N I L E L K K M V E E A G L E I T V I E S I P

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
S S
T S T T
S S
T T S
T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence V H E D I K Q G K P N R D A L I E N Y K T S I R N V G A A G I P V V C Y N F M P V F D W T R S D L H H P L P D G S T S L A F L K S D L A G V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T
T T T
S S
S
S B S S
T T S
B
S S S S
S S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence D P V A I I E N Y R Q N I S E E D L W A N L E Y F I K A I L P T A E E A G V K M A I H P D D P P Y G I F G L P R I I T G Q E A V E R F L N L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T
T
S S S S
T T
S T T

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . . . . . . . . 260 . . . . . . . . . 270 . . . . . . . . . 280

Sequence Y D S E H N G I T M C V G S Y A S D P K N D V L A M T E Y A L K R N R I N F M H T R N V T A G A W G F Q E T A H L S Q A G D I D M N A V V K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S
S T T T T S T T
T
T T
S S G G G S S

. . . . . . . . . 290 . . . . . . . . . 300 . . . . . . . . . 310 . . . . . . . . . 320 . . . . . . . . . 330 . . . . . . . . . 340 . . . . . . . . .

Sequence L L V D Y D W Q G S L R P D H G R R I W G D Q T K T P G Y G L Y D R A L G A T Y F N G L Y E A N M R A A G K T P D F G I K A K T V G T K E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
B
T T
S T T
T T
S
S S

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	G	S	H	M	K	M	S	F	R	W	Y	G	K	K	D	P	V	T	L	E	E	I	K	A	I	P	G	M	Q	G	I	V	T	A	V	Y	D	V	P	V	G	Q	A	W	P	L	E	N	I	L	E	L	K	K	M	V	E	E	A	G	L	E	I	T	V	I	E	S	I	P
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)													T	T		S	S							T	S	T	T										S	S		T	T	S																	T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	V	H	E	D	I	K	Q	G	K	P	N	R	D	A	L	I	E	N	Y	K	T	S	I	R	N	V	G	A	A	G	I	P	V	V	C	Y	N	F	M	P	V	F	D	W	T	R	S	D	L	H	H	P	L	P	D	G	S	T	S	L	A	F	L	K	S	D	L	A	G	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)								T		T	T																			T										S	S		S				S	B	S	S				T	T	S		B						S	S	S	S		S	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	D	P	V	A	I	I	E	N	Y	R	Q	N	I	S	E	E	D	L	W	A	N	L	E	Y	F	I	K	A	I	L	P	T	A	E	E	A	G	V	K	M	A	I	H	P	D	D	P	P	Y	G	I	F	G	L	P	R	I	I	T	G	Q	E	A	V	E	R	F	L	N	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)												T																									T									S	S	S	S			T	T							S									T	T
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Sequence	Y	D	S	E	H	N	G	I	T	M	C	V	G	S	Y	A	S	D	P	K	N	D	V	L	A	M	T	E	Y	A	L	K	R	N	R	I	N	F	M	H	T	R	N	V	T	A	G	A	W	G	F	Q	E	T	A	H	L	S	Q	A	G	D	I	D	M	N	A	V	V	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S		S	T	T											T	T	S	T	T														T														T	T							S	S	G	G	G	S	S
	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.
Sequence	L	L	V	D	Y	D	W	Q	G	S	L	R	P	D	H	G	R	R	I	W	G	D	Q	T	K	T	P	G	Y	G	L	Y	D	R	A	L	G	A	T	Y	F	N	G	L	Y	E	A	N	M	R	A	A	G	K	T	P	D	F	G	I	K	A	K	T	V	G	T	K	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)					T	T												B		T	T					S	T	T																								T	T										S		S	S