Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP38104
DateThu Jan 5 11:57:58 GMT 2012
Unique Job ID9cfe34fe4548a92e

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template c2qjjC_
Top template information
PDB header:lyase
Chain: C: PDB Molecule:mandelate racemase/muconate lactonizing enzyme;
PDBTitle: crystal structure of d-mannonate dehydratase from novosphingobium2 aromaticivorans
Confidence and coverage
Confidence:100.0% Coverage: 95%
384 residues ( 95% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MKIVKAEVFVTCPGRNFVTLKITTEDGITGLGDATLNGRELSVASYLQDHLCPQLIGRDA
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Disorder  ????























































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   .........70.........80.........90.........100.........110.........120
Sequence  HRIEDIWQFFYKGAYWRRGPVTMSAISAVDMALWDIKAKAANMPLYQLLGGASREGVMVY
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   .........130.........140.........150.........160.........170.........180
Sequence  CHTTGHSIDEALDDYARHQELGFKAIRVQCGIPGMKTTYGMSKGKGLAYEPATKGQWPEE
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?

?
?
?????
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   .........190.........200.........210.........220.........230.........240
Sequence  QLWSTEKYLDFMPKLFDAVRNKFGFNEHLLHDMHHRLTPIEAARFGKSIEDYRMFWMEDP
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Disorder  ?????






















































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   .........250.........260.........270.........280.........290.........300
Sequence  TPAENQECFRLIRQHTVTPIAVGEVFNSIWDCKQLIEEQLIDYIRTTLTHAGGITGMRRI
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   .........310.........320.........330.........340.........350.........360
Sequence  ADFASLYQVRTGSHGPSDLSPVCMAAALHFDLWVPNFGVQEYMGYSEQMLEVFPHNWTFD
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   .........370.........380.........390.........400....
Sequence  NGYMHPGDKPGLGIEFDEKLAAKYPYEPAYLPVARLEDGTLWNW
Secondary structure 





























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Disorder 







































????
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Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 2qjj chain C

3D model

Region: 1 - 404
Aligned: 384
Modelled: 384
Confidence: 100.0%
Identity: 66%
PDB header:lyase
Chain: C: PDB Molecule:mandelate racemase/muconate lactonizing enzyme;
PDBTitle: crystal structure of d-mannonate dehydratase from novosphingobium2 aromaticivorans

Phyre2

PDB 3thu chain C

3D model

Region: 2 - 404
Aligned: 401
Modelled: 403
Confidence: 100.0%
Identity: 66%
PDB header:lyase
Chain: C: PDB Molecule:mandelate racemase / muconate lactonizing enzyme family
PDBTitle: crystal structure of an enolase from sphingomonas sp. ska58 (efi2 target efi-501683) with bound mg

Phyre2

PDB 3t6c chain B

3D model

Region: 1 - 402
Aligned: 402
Modelled: 402
Confidence: 100.0%
Identity: 43%
PDB header:lyase
Chain: B: PDB Molecule:putative mand family dehydratase;
PDBTitle: crystal structure of an enolase from pantoea ananatis (efi target efi-2 501676) with bound d-gluconate and mg

Phyre2

PDB 3tji chain A

3D model

Region: 1 - 402
Aligned: 391
Modelled: 402
Confidence: 100.0%
Identity: 37%
PDB header:lyase
Chain: A: PDB Molecule:mandelate racemase/muconate lactonizing enzyme, n-terminal
PDBTitle: crystal structure of an enolase from enterobacter sp. 638 (efi target2 efi-501662) with bound mg

Phyre2

PDB 3bsm chain D

3D model

Region: 1 - 387
Aligned: 358
Modelled: 358
Confidence: 100.0%
Identity: 67%
PDB header:lyase
Chain: D: PDB Molecule:mandelate racemase/muconate lactonizing enzyme;
PDBTitle: crystal structure of d-mannonate dehydratase from2 chromohalobacter salexigens

Phyre2

PDB 3rr1 chain B

3D model

Region: 1 - 404
Aligned: 372
Modelled: 376
Confidence: 100.0%
Identity: 34%
PDB header:lyase
Chain: B: PDB Molecule:putative d-galactonate dehydratase;
PDBTitle: crystal structure of enolase prk14017 (target efi-500653) from2 ralstonia pickettii 12j

Phyre2

PDB 2oo6 chain A

3D model

Region: 1 - 391
Aligned: 376
Modelled: 380
Confidence: 100.0%
Identity: 24%
PDB header:isomerase
Chain: A: PDB Molecule:putative l-alanine-dl-glutamate epimerase;
PDBTitle: crystal structure of putative l-alanine-dl-glutamate epimerase from2 burkholderia xenovorans strain lb400

Phyre2

PDB 2o56 chain D

3D model

Region: 1 - 386
Aligned: 368
Modelled: 368
Confidence: 100.0%
Identity: 29%
PDB header:structural genomics, unknown function
Chain: D: PDB Molecule:putative mandelate racemase;
PDBTitle: crystal structure of a member of the enolase superfamily from2 salmonella typhimurium

Phyre2

PDB 2ox4 chain E

3D model

Region: 1 - 386
Aligned: 368
Modelled: 368
Confidence: 100.0%
Identity: 30%
PDB header:isomerase
Chain: E: PDB Molecule:putative mandelate racemase;
PDBTitle: crystal structure of putative dehydratase from zymomonas mobilis zm4

Phyre2

PDB 3rcy chain C

3D model

Region: 1 - 395
Aligned: 370
Modelled: 371
Confidence: 100.0%
Identity: 28%
PDB header:isomerase
Chain: C: PDB Molecule:mandelate racemase/muconate lactonizing enzyme-like
PDBTitle: crystal structure of mandelate racemase/muconate lactonizing enzyme-2 like protein from roseovarius sp. tm1035

Phyre2

PDB 3dfh chain C

3D model

Region: 2 - 385
Aligned: 353
Modelled: 353
Confidence: 100.0%
Identity: 39%
PDB header:isomerase
Chain: C: PDB Molecule:mandelate racemase;
PDBTitle: crystal structure of putative mandelate racemase / muconate2 lactonizing enzyme from vibrionales bacterium swat-3

Phyre2

PDB 2qgy chain A

3D model

Region: 2 - 387
Aligned: 351
Modelled: 352
Confidence: 100.0%
Identity: 22%
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:enolase from the environmental genome shotgun
PDBTitle: crystal structure of an enolase from the environmental2 genome shotgun sequencing of the sargasso sea

Phyre2

PDB 3n4e chain A

3D model

Region: 1 - 391
Aligned: 360
Modelled: 363
Confidence: 100.0%
Identity: 23%
PDB header:isomerase
Chain: A: PDB Molecule:mandelate racemase/muconate lactonizing enzyme, c-terminal
PDBTitle: crystal structure of mandelate racemase/muconate lactonizing protein2 from paracoccus denitrificans pd1222

Phyre2

PDB 2pod chain A

3D model

Region: 1 - 387
Aligned: 362
Modelled: 366
Confidence: 100.0%
Identity: 24%
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:mandelate racemase / muconate lactonizing enzyme;
PDBTitle: crystal structure of a member of enolase superfamily from burkholderia2 pseudomallei k96243

Phyre2

PDB 2gl5 chain A

3D model

Region: 1 - 385
Aligned: 372
Modelled: 385
Confidence: 100.0%
Identity: 30%
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:putative dehydratase protein;
PDBTitle: crystal structure of putative dehydratase from salmonella thyphimurium

Phyre2

PDB 2poz chain A

3D model

Region: 1 - 386
Aligned: 367
Modelled: 367
Confidence: 100.0%
Identity: 26%
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:putative dehydratase;
PDBTitle: crystal structure of a putative dehydratase from mesorhizobium loti

Phyre2

PDB 3h12 chain B

3D model

Region: 1 - 392
Aligned: 355
Modelled: 355
Confidence: 100.0%
Identity: 29%
PDB header:isomerase
Chain: B: PDB Molecule:mandelate racemase;
PDBTitle: crystal structure of putative mandelate racemase from bordetella2 bronchiseptica rb50

Phyre2

PDB 2qq6 chain B

3D model

Region: 2 - 393
Aligned: 370
Modelled: 374
Confidence: 100.0%
Identity: 26%
PDB header:isomerase
Chain: B: PDB Molecule:mandelate racemase/muconate lactonizing enzyme-
PDBTitle: crystal structure of mandelate racemase/muconate2 lactonizing enzyme-like protein from rubrobacter3 xylanophilus dsm 9941

Phyre2

PDB 3t8q chain A

3D model

Region: 1 - 391
Aligned: 357
Modelled: 363
Confidence: 100.0%
Identity: 22%
PDB header:isomerase
Chain: A: PDB Molecule:mandelate racemase/muconate lactonizing enzyme family
PDBTitle: crystal structure of mandelate racemase/muconate lactonizing enzyme2 family protein from hoeflea phototrophica

Phyre2

PDB 3t9p chain B

3D model

Region: 1 - 387
Aligned: 353
Modelled: 359
Confidence: 100.0%
Identity: 21%
PDB header:isomerase
Chain: B: PDB Molecule:mandelate racemase/muconate lactonizing enzyme family
PDBTitle: crystal structure of a putative mandelate racemase/muconate2 lactonizing enzyme family protein from roseovarius

Phyre2
1

c2qjjC_
2

c3thuC_
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c3t6cB_
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c3tjiA_
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c3bsmD_
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c3rr1B_
7

c2oo6A_
8

c2o56D_
9

c2ox4E_
10

c3rcyC_
11

c3dfhC_
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c2qgyA_
13

c3n4eA_
14

c2podA_
15

c2gl5A_
16

c2pozA_
17

c3h12B_
18

c2qq6B_
19

c3t8qA_
20

c3t9pB_
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Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c2qjjC_



100.0 66 PDB header:lyase
Chain: C: PDB Molecule:mandelate racemase/muconate lactonizing enzyme;
PDBTitle: crystal structure of d-mannonate dehydratase from novosphingobium2 aromaticivorans
2c3thuC_



100.0 66 PDB header:lyase
Chain: C: PDB Molecule:mandelate racemase / muconate lactonizing enzyme family
PDBTitle: crystal structure of an enolase from sphingomonas sp. ska58 (efi2 target efi-501683) with bound mg
3c3t6cB_



100.0 43 PDB header:lyase
Chain: B: PDB Molecule:putative mand family dehydratase;
PDBTitle: crystal structure of an enolase from pantoea ananatis (efi target efi-2 501676) with bound d-gluconate and mg
4c3tjiA_



100.0 37 PDB header:lyase
Chain: A: PDB Molecule:mandelate racemase/muconate lactonizing enzyme, n-terminal
PDBTitle: crystal structure of an enolase from enterobacter sp. 638 (efi target2 efi-501662) with bound mg
5c3bsmD_



100.0 67 PDB header:lyase
Chain: D: PDB Molecule:mandelate racemase/muconate lactonizing enzyme;
PDBTitle: crystal structure of d-mannonate dehydratase from2 chromohalobacter salexigens
6c3rr1B_



100.0 34 PDB header:lyase
Chain: B: PDB Molecule:putative d-galactonate dehydratase;
PDBTitle: crystal structure of enolase prk14017 (target efi-500653) from2 ralstonia pickettii 12j
7c2oo6A_



100.0 24 PDB header:isomerase
Chain: A: PDB Molecule:putative l-alanine-dl-glutamate epimerase;
PDBTitle: crystal structure of putative l-alanine-dl-glutamate epimerase from2 burkholderia xenovorans strain lb400
8c2o56D_



100.0 29 PDB header:structural genomics, unknown function
Chain: D: PDB Molecule:putative mandelate racemase;
PDBTitle: crystal structure of a member of the enolase superfamily from2 salmonella typhimurium
9c2ox4E_



100.0 30 PDB header:isomerase
Chain: E: PDB Molecule:putative mandelate racemase;
PDBTitle: crystal structure of putative dehydratase from zymomonas mobilis zm4
10c3rcyC_



100.0 28 PDB header:isomerase
Chain: C: PDB Molecule:mandelate racemase/muconate lactonizing enzyme-like
PDBTitle: crystal structure of mandelate racemase/muconate lactonizing enzyme-2 like protein from roseovarius sp. tm1035
11c3dfhC_



100.0 39 PDB header:isomerase
Chain: C: PDB Molecule:mandelate racemase;
PDBTitle: crystal structure of putative mandelate racemase / muconate2 lactonizing enzyme from vibrionales bacterium swat-3
12c2qgyA_



100.0 22 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:enolase from the environmental genome shotgun
PDBTitle: crystal structure of an enolase from the environmental2 genome shotgun sequencing of the sargasso sea
13c3n4eA_



100.0 23 PDB header:isomerase
Chain: A: PDB Molecule:mandelate racemase/muconate lactonizing enzyme, c-terminal
PDBTitle: crystal structure of mandelate racemase/muconate lactonizing protein2 from paracoccus denitrificans pd1222
14c2podA_



100.0 24 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:mandelate racemase / muconate lactonizing enzyme;
PDBTitle: crystal structure of a member of enolase superfamily from burkholderia2 pseudomallei k96243
15c2gl5A_



100.0 30 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:putative dehydratase protein;
PDBTitle: crystal structure of putative dehydratase from salmonella thyphimurium
16c2pozA_



100.0 26 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:putative dehydratase;
PDBTitle: crystal structure of a putative dehydratase from mesorhizobium loti
17c3h12B_



100.0 29 PDB header:isomerase
Chain: B: PDB Molecule:mandelate racemase;
PDBTitle: crystal structure of putative mandelate racemase from bordetella2 bronchiseptica rb50
18c2qq6B_



100.0 26 PDB header:isomerase
Chain: B: PDB Molecule:mandelate racemase/muconate lactonizing enzyme-
PDBTitle: crystal structure of mandelate racemase/muconate2 lactonizing enzyme-like protein from rubrobacter3 xylanophilus dsm 9941
19c3t8qA_



100.0 22 PDB header:isomerase
Chain: A: PDB Molecule:mandelate racemase/muconate lactonizing enzyme family
PDBTitle: crystal structure of mandelate racemase/muconate lactonizing enzyme2 family protein from hoeflea phototrophica
20c3t9pB_



100.0 21 PDB header:isomerase
Chain: B: PDB Molecule:mandelate racemase/muconate lactonizing enzyme family
PDBTitle: crystal structure of a putative mandelate racemase/muconate2 lactonizing enzyme family protein from roseovarius
21c2pgwC_



not modelled 100.0 24 PDB header:isomerase
Chain: C: PDB Molecule:muconate cycloisomerase;
PDBTitle: crystal structure of a putative muconate cycloisomerase from2 sinorhizobium meliloti 1021
22c2qdeA_



not modelled 100.0 26 PDB header:lyase
Chain: A: PDB Molecule:mandelate racemase/muconate lactonizing enzyme family
PDBTitle: crystal structure of mandelate racemase/muconate lactonizing family2 protein from azoarcus sp. ebn1
23c2pp1C_



not modelled 100.0 26 PDB header:lyase
Chain: C: PDB Molecule:l-talarate/galactarate dehydratase;
PDBTitle: crystal structure of l-talarate/galactarate dehydratase from2 salmonella typhimurium lt2 liganded with mg and l-lyxarohydroxamate
24c3i6eA_



not modelled 100.0 20 PDB header:isomerase
Chain: A: PDB Molecule:muconate cycloisomerase i;
PDBTitle: crystal structure of muconate lactonizing enzyme from2 ruegeria pomeroyi.
25c3sjnB_



not modelled 100.0 29 PDB header:lyase
Chain: B: PDB Molecule:mandelate racemase/muconate lactonizing protein;
PDBTitle: crystal structure of enolase spea_3858 (target efi-500646) from2 shewanella pealeana with magnesium bound
26c3dipA_



not modelled 100.0 25 PDB header:lyase
Chain: A: PDB Molecule:enolase;
PDBTitle: crystal structure of an enolase protein from the2 environmental genome shotgun sequencing of the sargasso sea
27c2chrA_



not modelled 100.0 20 PDB header:isomerase
Chain: A: PDB Molecule:chloromuconate cycloisomerase;
PDBTitle: a re-evaluation of the crystal structure of chloromuconate2 cycloisomerase
28c2nqlB_



not modelled 100.0 24 PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:isomerase/lactonizing enzyme;
PDBTitle: crystal structure of a member of the enolase superfamily from2 agrobacterium tumefaciens
29c3bjsB_



not modelled 100.0 30 PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:mandelate racemase/muconate lactonizing enzyme;
PDBTitle: crystal structure of a member of enolase superfamily from polaromonas2 sp. js666
30c2ps2A_



not modelled 100.0 22 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:putative mandelate racemase/muconate lactonizing
PDBTitle: crystal structure of putative mandelate racemase/muconate2 lactonizing enzyme from aspergillus oryzae
31c3fv9D_



not modelled 100.0 23 PDB header:hydrolase
Chain: D: PDB Molecule:mandelate racemase/muconate lactonizing enzyme;
PDBTitle: crystal structure of putative mandelate racemase/muconatelactonizing2 enzyme from roseovarius nubinhibens ism complexed with magnesium
32c3tj4B_



not modelled 100.0 27 PDB header:lyase
Chain: B: PDB Molecule:mandelate racemase;
PDBTitle: crystal structure of an enolase from agrobacterium tumefaciens (efi2 target efi-502087) no mg
33c3mqtV_



not modelled 100.0 22 PDB header:isomerase
Chain: V: PDB Molecule:
PDBTitle: crystal structure of a mandelate racemase/muconate lactonizing enzyme2 from shewanella pealeana
34c3es8D_



not modelled 100.0 27 PDB header:isomerase, lyase
Chain: D: PDB Molecule:muconate cycloisomerase;
PDBTitle: crystal structure of divergent enolase from oceanobacillus2 iheyensis complexed with mg and l-malate.
35c1nu5A_



not modelled 100.0 22 PDB header:isomerase
Chain: A: PDB Molecule:chloromuconate cycloisomerase;
PDBTitle: crystal structure of pseudomonas sp. p51 chloromuconate lactonizing2 enzyme
36c2rdxG_



not modelled 100.0 21 PDB header:structural genomics, unknown function
Chain: G: PDB Molecule:mandelate racemase/muconate lactonizing enzyme, putative;
PDBTitle: crystal structure of mandelate racemase/muconate lactonizing enzyme2 from roseovarius nubinhibens ism
37c2hxtA_



not modelled 100.0 23 PDB header:unknown function
Chain: A: PDB Molecule:l-fuconate dehydratase;
PDBTitle: crystal structure of l-fuconate dehydratase from xanthomonas2 campestris liganded with mg++ and d-erythronohydroxamate
38c3sqsA_



not modelled 100.0 25 PDB header:isomerase
Chain: A: PDB Molecule:mandelate racemase/muconate lactonizing protein;
PDBTitle: crystal structure of a putative mandelate racemase/muconate2 lactonizing protein from dinoroseobacter shibae dfl 12
39c2p88E_



not modelled 100.0 26 PDB header:lyase
Chain: E: PDB Molecule:mandelate racemase/muconate lactonizing enzyme
PDBTitle: crystal structure of n-succinyl arg/lys racemase from2 bacillus cereus atcc 14579
40c3mkcA_



not modelled 100.0 24 PDB header:isomerase
Chain: A: PDB Molecule:racemase;
PDBTitle: crystal structure of a putative racemase
41c2gdqB_



not modelled 100.0 25 PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:yitf;
PDBTitle: crystal structure of mandelate racemase/muconate lactonizing enzyme2 from bacillus subtilis at 1.8 a resolution
42c3dg7B_



not modelled 100.0 20 PDB header:isomerase
Chain: B: PDB Molecule:muconate cycloisomerase;
PDBTitle: crystal structure of muconate lactonizing enzyme from mucobacterium2 smegmatis complexed with muconolactone
43c3my9A_



not modelled 100.0 22 PDB header:isomerase
Chain: A: PDB Molecule:muconate cycloisomerase;
PDBTitle: crystal structure of a muconate cycloisomerase from azorhizobium2 caulinodans
44c3q45E_



not modelled 100.0 23 PDB header:isomerase
Chain: E: PDB Molecule:mandelate racemase/muconate lactonizing enzyme family;
PDBTitle: crystal structure of dipeptide epimerase from cytophaga hutchinsonii2 complexed with mg and dipeptide d-ala-l-val
45c1mraA_



not modelled 100.0 21 PDB header:racemase
Chain: A: PDB Molecule:mandelate racemase;
PDBTitle: mandelate racemase mutant d270n co-crystallized with (s)-atrolactate
46c1f9cA_



not modelled 100.0 21 PDB header:isomerase
Chain: A: PDB Molecule:protein (muconate cycloisomerase i);
PDBTitle: crystal structure of mle d178n variant
47c2hzgB_



not modelled 100.0 20 PDB header:isomerase
Chain: B: PDB Molecule:mandelate racemase/muconate lactonizing enzyme/enolase
PDBTitle: crystal stucture of predicted mandelate racemase from rhodobacter2 sphaeroides
48c3i4kA_



not modelled 100.0 22 PDB header:isomerase
Chain: A: PDB Molecule:muconate lactonizing enzyme;
PDBTitle: crystal structure of muconate lactonizing enzyme from2 corynebacterium glutamicum
49c3fcpF_



not modelled 100.0 22 PDB header:isomerase
Chain: F: PDB Molecule:l-ala-d/l-glu epimerase, a muconate lactonizing
PDBTitle: crystal structure of muconate lactonizing enzyme from2 klebsiella pneumoniae
50c3cb3B_



not modelled 100.0 26 PDB header:isomerase
Chain: B: PDB Molecule:mandelate racemase/muconate lactonizing enzyme;
PDBTitle: crystal structure of l-talarate dehydratase from polaromonas sp. js6662 complexed with mg and l-glucarate
51c1rvkA_



not modelled 100.0 22 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:isomerase/lactonizing enzyme;
PDBTitle: crystal structure of enolase agr_l_2751 from agrobacterium tumefaciens
52c2qddA_



not modelled 100.0 21 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:mandelate racemase/muconate lactonizing enzyme;
PDBTitle: crystal structure of a member of enolase superfamily from roseovarius2 nubinhibens ism
53c3eezA_



not modelled 100.0 25 PDB header:isomerase
Chain: A: PDB Molecule:putative mandelate racemase/muconate lactonizing
PDBTitle: crystal structure of a putative mandelate racemase/muconate2 lactonizing enzyme from silicibacter pomeroyi
54c3ugvE_



not modelled 100.0 25 PDB header:lyase
Chain: E: PDB Molecule:enolase;
PDBTitle: crystal structure of an enolase from alpha pretobacterium bal199 (efi2 target efi-501650) with bound mg
55c1ec8B_



not modelled 100.0 19 PDB header:lyase
Chain: B: PDB Molecule:glucarate dehydratase;
PDBTitle: e. coli glucarate dehydratase bound to product 2,3-2 dihydroxy-5-oxo-hexanedioate
56c2oqhD_



not modelled 100.0 22 PDB header:isomerase
Chain: D: PDB Molecule:putative isomerase;
PDBTitle: crystal structure of an isomerase from streptomyces coelicolor a3(2)
57c3toyC_



not modelled 100.0 25 PDB header:lyase
Chain: C: PDB Molecule:mandelate racemase/muconate lactonizing enzyme family
PDBTitle: crystal structure of enolase brado_4202 (target efi-501651) from2 bradyrhizobium sp. ors278 with calcium and acetate bound
58c2ppgB_



not modelled 100.0 23 PDB header:isomerase
Chain: B: PDB Molecule:putative isomerase;
PDBTitle: crystal structure of putative isomerase from sinorhizobium meliloti
59c3ddmD_



not modelled 100.0 22 PDB header:lyase
Chain: D: PDB Molecule:putative mandelate racemase/muconate lactonizing
PDBTitle: crystal structure of mandelate racemase/muconate2 lactonizing enzyme from bordetella bronchiseptica rb50
60c3n6jA_



not modelled 100.0 21 PDB header:isomerase
Chain: A: PDB Molecule:mandelate racemase/muconate lactonizing protein;
PDBTitle: crystal structure of mandelate racemase/muconate lactonizing protein2 from actinobacillus succinogenes 130z
61c1sjaA_



not modelled 100.0 19 PDB header:lyase, isomerase
Chain: A: PDB Molecule:n-acylamino acid racemase;
PDBTitle: x-ray structure of o-succinylbenzoate synthase complexed2 with n-acetylmethionine
62c1jpmB_



not modelled 100.0 26 PDB header:isomerase
Chain: B: PDB Molecule:l-ala-d/l-glu epimerase;
PDBTitle: l-ala-d/l-glu epimerase
63c2p0iA_



not modelled 100.0 23 PDB header:lyase
Chain: A: PDB Molecule:l-rhamnonate dehydratase;
PDBTitle: crystal structure of l-rhamnonate dehydratase from gibberella zeae
64c2ovlA_



not modelled 100.0 26 PDB header:isomerase
Chain: A: PDB Molecule:putative racemase;
PDBTitle: crystal structure of a racemase from streptomyces2 coelicolor a3(2)
65c3jw7E_



not modelled 100.0 24 PDB header:isomerase
Chain: E: PDB Molecule:dipeptide epimerase;
PDBTitle: crystal structure of dipeptide epimerase from enterococcus faecalis2 v583 complexed with mg and dipeptide l-ile-l-tyr
66c3nxlD_



not modelled 100.0 19 PDB header:lyase
Chain: D: PDB Molecule:glucarate dehydratase;
PDBTitle: crystal structure of glucarate dehydratase from burkholderia cepacia2 complexed with magnesium
67c3mznA_



not modelled 100.0 20 PDB header:lyase
Chain: A: PDB Molecule:glucarate dehydratase;
PDBTitle: crystal structure of probable glucarate dehydratase from2 chromohalobacter salexigens dsm 3043
68c2fkpC_



not modelled 100.0 22 PDB header:isomerase
Chain: C: PDB Molecule:n-acylamino acid racemase;
PDBTitle: the mutant g127c-t313c of deinococcus radiodurans n-2 acylamino acid racemase
69c3px5A_



not modelled 100.0 21 PDB header:metal binding protein
Chain: A: PDB Molecule:enzyme of enolase superfamily;
PDBTitle: structure of efi enolase target en500555, a putative dipeptide2 epimerase: apo structure
70c2oz3F_



not modelled 100.0 25 PDB header:lyase
Chain: F: PDB Molecule:mandelate racemase/muconate lactonizing enzyme;
PDBTitle: crystal structure of l-rhamnonate dehydratase from azotobacter2 vinelandii
71c3cxoA_



not modelled 100.0 22 PDB header:lyase
Chain: A: PDB Molecule:putative galactonate dehydratase;
PDBTitle: crystal structure of l-rhamnonate dehydratase from2 salmonella typhimurium complexed with mg and 3-deoxy-l-3 rhamnonate
72c1wueA_



not modelled 100.0 19 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:mandelate racemase/muconate lactonizing enzyme family
PDBTitle: crystal structure of protein gi:29375081, unknown member of enolase2 superfamily from enterococcus faecalis v583
73c2zc8B_



not modelled 100.0 22 PDB header:metal binding protein
Chain: B: PDB Molecule:n-acylamino acid racemase;
PDBTitle: crystal structure of n-acylamino acid racemase from thermus2 thermophilus hb8
74c2dw7G_



not modelled 100.0 19 PDB header:lyase
Chain: G: PDB Molecule:bll6730 protein;
PDBTitle: crystal structure of d-tartrate dehydratase from2 bradyrhizobium japonicum complexed with mg++ and meso-3 tartrate
75c2oz8B_



not modelled 100.0 21 PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:mll7089 protein;
PDBTitle: crystal structure of putative mandelate racemase from mesorhizobium2 loti
76c3ritE_



not modelled 100.0 23 PDB header:isomerase
Chain: E: PDB Molecule:dipeptide epimerase;
PDBTitle: crystal structure of dipeptide epimerase from methylococcus capsulatus2 complexed with mg and dipeptide l-arg-d-lys
77c2pmqA_



not modelled 100.0 22 PDB header:isomerase
Chain: A: PDB Molecule:mandelate racemase/muconate lactonizing enzyme;
PDBTitle: crystal structure of a mandelate racemase/muconate lactonizing enzyme2 from roseovarius sp. htcc2601
78c3msyC_



not modelled 100.0 26 PDB header:isomerase
Chain: C: PDB Molecule:mandelate racemase/muconate lactonizing enzyme;
PDBTitle: crystal structure of mandelate racemase/muconate lactonizing enzyme2 from a marine actinobacterium
79c3ik4A_



not modelled 100.0 19 PDB header:isomerase
Chain: A: PDB Molecule:mandelate racemase/muconate lactonizing protein;
PDBTitle: crystal structure of mandelate racemase/muconate lactonizing protein2 from herpetosiphon aurantiacus
80c1wufB_



not modelled 100.0 19 PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:hypothetical protein lin2664;
PDBTitle: crystal structure of protein gi:16801725, member of enolase2 superfamily from listeria innocua clip11262
81c3cyjA_



not modelled 100.0 26 PDB header:isomerase
Chain: A: PDB Molecule:mandelate racemase/muconate lactonizing enzyme-like
PDBTitle: crystal structure of a mandelate racemase/muconate lactonizing enzyme-2 like protein from rubrobacter xylanophilus
82c3mwcA_



not modelled 100.0 16 PDB header:ligase
Chain: A: PDB Molecule:mandelate racemase/muconate lactonizing protein;
PDBTitle: crystal structure of probable o-succinylbenzoic acid synthetase from2 kosmotoga olearia
83c3n4fD_



not modelled 100.0 19 PDB header:isomerase
Chain: D: PDB Molecule:mandelate racemase/muconate lactonizing protein;
PDBTitle: crystal structure of mandelate racemase/muconate lactonizing protein2 from geobacillus sp. y412mc10
84c3dfyJ_



not modelled 100.0 22 PDB header:isomerase
Chain: J: PDB Molecule:muconate cycloisomerase;
PDBTitle: crystal structure of apo dipeptide epimerase from2 thermotoga maritima
85c3qldB_



not modelled 100.0 15 PDB header:isomerase
Chain: B: PDB Molecule:mandelate racemase/muconate lactonizing protein;
PDBTitle: structure of probable mandelate racemase (aalaa1draft_2112) from2 alicyclobacillus acidocaldarius
86c2pgeA_



not modelled 100.0 14 PDB header:lyase
Chain: A: PDB Molecule:menc;
PDBTitle: crystal structure of menc from desulfotalea psychrophila2 lsv54
87c3ijlA_



not modelled 100.0 20 PDB header:isomerase
Chain: A: PDB Molecule:muconate cycloisomerase;
PDBTitle: structure of dipeptide epimerase from bacteroides thetaiotaomicron2 complexed with l-pro-d-glu; nonproductive substrate binding.
88c2oktA_



not modelled 100.0 15 PDB header:lyase
Chain: A: PDB Molecule:o-succinylbenzoic acid synthetase;
PDBTitle: crystal structure of o-succinylbenzoic acid synthetase from2 staphylococcus aureus, ligand-free form
89c1jpdX_



not modelled 100.0 21 PDB header:isomerase
Chain: X: PDB Molecule:l-ala-d/l-glu epimerase;
PDBTitle: l-ala-d/l-glu epimerase
90d2gl5a1



not modelled 100.0 26 Fold:TIM beta/alpha-barrel
Superfamily:Enolase C-terminal domain-like
Family:D-glucarate dehydratase-like
91d2gdqa1



not modelled 100.0 21 Fold:TIM beta/alpha-barrel
Superfamily:Enolase C-terminal domain-like
Family:D-glucarate dehydratase-like
92d2chra1



not modelled 100.0 15 Fold:TIM beta/alpha-barrel
Superfamily:Enolase C-terminal domain-like
Family:D-glucarate dehydratase-like
93d1muca1



not modelled 100.0 17 Fold:TIM beta/alpha-barrel
Superfamily:Enolase C-terminal domain-like
Family:D-glucarate dehydratase-like
94d1nu5a1



not modelled 100.0 18 Fold:TIM beta/alpha-barrel
Superfamily:Enolase C-terminal domain-like
Family:D-glucarate dehydratase-like
95d1tzza1



not modelled 100.0 19 Fold:TIM beta/alpha-barrel
Superfamily:Enolase C-terminal domain-like
Family:D-glucarate dehydratase-like
96d1sjda1



not modelled 100.0 18 Fold:TIM beta/alpha-barrel
Superfamily:Enolase C-terminal domain-like
Family:D-glucarate dehydratase-like
97d1rvka1



not modelled 100.0 20 Fold:TIM beta/alpha-barrel
Superfamily:Enolase C-terminal domain-like
Family:D-glucarate dehydratase-like
98c3cawB_



not modelled 100.0 15 PDB header:oxidoreductase
Chain: B: PDB Molecule:o-succinylbenzoate synthase;
PDBTitle: crystal structure of o-succinylbenzoate synthase from2 bdellovibrio bacteriovorus liganded with mg
99d1wufa1



not modelled 100.0 16 Fold:TIM beta/alpha-barrel
Superfamily:Enolase C-terminal domain-like
Family:D-glucarate dehydratase-like
100c1kczA_



not modelled 100.0 17 PDB header:lyase
Chain: A: PDB Molecule:beta-methylaspartase;
PDBTitle: crystal structure of beta-methylaspartase from clostridium2 tetanomorphum. mg-complex.
101d1yeya1



not modelled 100.0 21 Fold:TIM beta/alpha-barrel
Superfamily:Enolase C-terminal domain-like
Family:D-glucarate dehydratase-like
102d2mnra1



not modelled 100.0 22 Fold:TIM beta/alpha-barrel
Superfamily:Enolase C-terminal domain-like
Family:D-glucarate dehydratase-like
103d1r0ma1



not modelled 100.0 20 Fold:TIM beta/alpha-barrel
Superfamily:Enolase C-terminal domain-like
Family:D-glucarate dehydratase-like
104d1wuea1



not modelled 100.0 17 Fold:TIM beta/alpha-barrel
Superfamily:Enolase C-terminal domain-like
Family:D-glucarate dehydratase-like
105c1kkoB_



not modelled 100.0 17 PDB header:lyase
Chain: B: PDB Molecule:3-methylaspartate ammonia-lyase;
PDBTitle: crystal structure of citrobacter amalonaticus2 methylaspartate ammonia lyase
106c2oztA_



not modelled 100.0 14 PDB header:lyase
Chain: A: PDB Molecule:tlr1174 protein;
PDBTitle: crystal structure of o-succinylbenzoate synthase from2 thermosynechococcus elongatus bp-1
107d1jpma1



not modelled 100.0 23 Fold:TIM beta/alpha-barrel
Superfamily:Enolase C-terminal domain-like
Family:D-glucarate dehydratase-like
108c2pa6A_



not modelled 100.0 18 PDB header:lyase
Chain: A: PDB Molecule:enolase;
PDBTitle: crystal structure of mj0232 from methanococcus jannaschii
109c3uj2C_



not modelled 100.0 20 PDB header:lyase
Chain: C: PDB Molecule:enolase 1;
PDBTitle: crystal structure of an enolase from anaerostipes caccae (efi target2 efi-502054) with bound mg and sulfate
110c2qvhB_



not modelled 100.0 18 PDB header:lyase
Chain: B: PDB Molecule:o-succinylbenzoate-coa synthase;
PDBTitle: crystal structure of o-succinylbenzoate synthase complexed with o-2 succinyl benzoate (osb)
111c3qn3B_



not modelled 100.0 17 PDB header:lyase
Chain: B: PDB Molecule:enolase;
PDBTitle: phosphopyruvate hydratase from campylobacter jejuni.
112c3tqpA_



not modelled 100.0 17 PDB header:lyase
Chain: A: PDB Molecule:enolase;
PDBTitle: structure of an enolase (eno) from coxiella burnetii
113d1jdfa1



not modelled 100.0 19 Fold:TIM beta/alpha-barrel
Superfamily:Enolase C-terminal domain-like
Family:D-glucarate dehydratase-like
114c1l8pC_



not modelled 100.0 19 PDB header:lyase
Chain: C: PDB Molecule:enolase 1;
PDBTitle: mg-phosphonoacetohydroxamate complex of s39a yeast enolase 1
115d1bqga1



not modelled 100.0 19 Fold:TIM beta/alpha-barrel
Superfamily:Enolase C-terminal domain-like
Family:D-glucarate dehydratase-like
116c1iyxA_



not modelled 100.0 18 PDB header:lyase
Chain: A: PDB Molecule:enolase;
PDBTitle: crystal structure of enolase from enterococcus hirae
117c2ptwA_



not modelled 100.0 20 PDB header:lyase
Chain: A: PDB Molecule:enolase;
PDBTitle: crystal structure of the t. brucei enolase complexed with2 sulphate, identification of a metal binding site iv
118c2akmA_



not modelled 100.0 17 PDB header:lyase
Chain: A: PDB Molecule:gamma enolase;
PDBTitle: fluoride inhibition of enolase: crystal structure of the2 inhibitory complex
119c2fymA_



not modelled 100.0 22 PDB header:lyase
Chain: A: PDB Molecule:enolase;
PDBTitle: crystal structure of e. coli enolase complexed with the2 minimal binding segment of rnase e.
120c3qtpB_



not modelled 100.0 16 PDB header:lyase
Chain: B: PDB Molecule:enolase 1;
PDBTitle: crystal structure analysis of entamoeba histolytica enolase

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite



Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0