14/01/2012 11:00:07 : INFO  : Run start: Sat Jan 14 11:00:07 GMT 2012
14/01/2012 11:00:10 : INFO  : Initialised job
14/01/2012 11:00:11 : INFO  : Renaming log file 'phyre2_20120114_110006.log' to '/bmm/www/servers/phyre2/public_html/phyre2_output/9cfe34fe4548a92e/phyre_20120114_110006.log'
14/01/2012 11:00:12 : INFO  : Initialised job:
Sequence
>batch____
MKIVKAEVFVTCPGRNFVTLKITTEDGITGLGDATLNGRELSVASYLQDHLCPQLIGRDA
HRIEDIWQFFYKGAYWRRGPVTMSAISAVDMALWDIKAKAANMPLYQLLGGASREGVMVY
CHTTGHSIDEALDDYARHQELGFKAIRVQCGIPGMKTTYGMSKGKGLAYEPATKGQWPEE
QLWSTEKYLDFMPKLFDAVRNKFGFNEHLLHDMHHRLTPIEAARFGKSIEDYRMFWMEDP
TPAENQECFRLIRQHTVTPIAVGEVFNSIWDCKQLIEEQLIDYIRTTLTHAGGITGMRRI
ADFASLYQVRTGSHGPSDLSPVCMAAALHFDLWVPNFGVQEYMGYSEQMLEVFPHNWTFD
NGYMHPGDKPGLGIEFDEKLAAKYPYEPAYLPVARLEDGTLWNW

14/01/2012 11:00:12 : INFO  : Checked sequence
14/01/2012 11:00:15 : INFO  : Finding homologues with PSI-BLAST
14/01/2012 11:00:17 : INFO  : PSI-BLAST 3 iterations
14/01/2012 11:02:37 : INFO  : PSI-BLAST 5 iterations
14/01/2012 11:05:07 : INFO  : Finished PSI-BLAST
14/01/2012 11:05:08 : INFO  : Running Buildali to generate a3m file
14/01/2012 11:13:43 : INFO  : Converting to HMM
14/01/2012 11:13:47 : INFO  : Calibrating HMM
14/01/2012 11:14:02 : INFO  : Searching HMM database
14/01/2012 11:23:27 : INFO  : Finished buildali
14/01/2012 11:23:27 : INFO  : Predicting secondary structure
14/01/2012 11:23:30 : INFO  : Predicted secondary structure (PSI-Pred)
14/01/2012 11:23:31 : INFO  : Predicting Disordered regions
14/01/2012 11:23:34 : INFO  : Predicted Disorder (Disopred)
14/01/2012 11:23:34 : INFO  : Running memsat_svm check
14/01/2012 11:24:55 : INFO  : Globular protein
14/01/2012 11:24:56 : INFO  : Predicted Transmembrane (memsat_svm) ID '9cfe34fe4548a92e'
14/01/2012 11:24:56 : INFO  : Initialising fold library search
14/01/2012 11:24:58 : INFO  : Initialised search input
14/01/2012 11:24:59 : INFO  : Building Ensemble models
14/01/2012 11:25:01 : INFO  : Building hh.c2qjjC_.model.1.pdb
14/01/2012 11:25:08 : INFO  : Building hh.c3thuC_.model.2.pdb
14/01/2012 11:25:14 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/9cfe34fe4548a92e/hh.c3thuC_.model.2.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/9cfe34fe4548a92e/c3thuC_.2.pdb
14/01/2012 11:25:16 : INFO  : Building hh.c3bsmD_.model.3.pdb
14/01/2012 11:25:22 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/9cfe34fe4548a92e/hh.c3bsmD_.model.3.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/9cfe34fe4548a92e/c3bsmD_.5.pdb
14/01/2012 11:25:25 : INFO  : Building c2qjjC_.1.pdb
14/01/2012 11:25:32 : INFO  : Building c3thuC_.2.pdb
14/01/2012 11:25:39 : INFO  : Building c3t6cB_.3.pdb
14/01/2012 11:25:45 : INFO  : Building c3tjiA_.4.pdb
14/01/2012 11:25:52 : INFO  : Building c3bsmD_.5.pdb
14/01/2012 11:25:58 : INFO  : Building c3rr1B_.6.pdb
14/01/2012 11:26:04 : INFO  : Building c2oo6A_.7.pdb
14/01/2012 11:26:14 : INFO  : Building c2o56D_.8.pdb
14/01/2012 11:26:20 : INFO  : Building c2ox4E_.9.pdb
14/01/2012 11:26:26 : INFO  : Building c3rcyC_.10.pdb
14/01/2012 11:26:32 : INFO  : Building c3dfhC_.11.pdb
14/01/2012 11:26:38 : INFO  : Building c2qgyA_.12.pdb
14/01/2012 11:26:46 : INFO  : Building c3n4eA_.13.pdb
14/01/2012 11:26:53 : INFO  : Building c2podA_.14.pdb
14/01/2012 11:26:58 : INFO  : Building c2gl5A_.15.pdb
14/01/2012 11:27:04 : INFO  : Building c2pozA_.16.pdb
14/01/2012 11:27:11 : INFO  : Building c3h12B_.17.pdb
14/01/2012 11:27:17 : INFO  : Building c2qq6B_.18.pdb
14/01/2012 11:27:22 : INFO  : Building c3t8qA_.19.pdb
14/01/2012 11:27:27 : INFO  : Building c3t9pB_.20.pdb
14/01/2012 11:27:55 : INFO  : Finished HH model building
14/01/2012 11:27:56 : WARN  : Set python to /bmm/www/servers/phyre2/bin//newpython/python2.6
14/01/2012 11:28:35 : INFO  : html domain output complete ID '9cfe34fe4548a92e'
14/01/2012 13:12:35 : INFO  : Run end  : Sat Jan 14 13:12:34 GMT 2012
