Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP33666
DateWed Jan 25 15:20:50 GMT 2012
Unique Job ID868320e2b339c08a

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template c3kvnA_
Top template information
PDB header:hydrolase
Chain: A: PDB Molecule:esterase esta;
PDBTitle: crystal structure of the full-length autotransporter esta from2 pseudomonas aeruginosa
Confidence and coverage
Confidence:100.0% Coverage: 15%
308 residues ( 15% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MQRKTLLSACIALALSGQGWAADITEVETTTGEKKNTNVTCPADPGKLSPEELKRLPSEC
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   .........70.........80.........90.........100.........110.........120
Sequence  SPLVEQNLMPWLSTGAAALITALAVVELNDDDDHHHRNNSPLPPTPPDDESDDTPVPPTP
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   .........130.........140.........150.........160.........170.........180
Sequence  GGDEIIPDDPDDTPTPPKPVSFNNDVILDKTEKTLTIRDSVFTYTENADGTISLQDSNGR
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   .........190.........200.........210.........220.........230.........240
Sequence  KATINLWQIDEANNTVALEGVSADGATKWQYNHNGELVITGDNATVNNNGKTTVDGKDST
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   .........250.........260.........270.........280.........290.........300
Sequence  GTEINGNNGKVIQDGDLDVSGGGHGIDITGDSATVDNKGTMTVTDPESMGIQIDGDKAIV
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   .........310.........320.........330.........340.........350.........360
Sequence  NNEGESTITNGGTGTQINGDDATANNNGKTTVDGKDSTGTEINGNNGKVIQDGDLDVSGG
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   .........370.........380.........390.........400.........410.........420
Sequence  GHGIDITGDSATVDNKGTMTVTDPESIGIQVDGDQAVVNNEGESAITNGGTGTQINGDDA
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   .........430.........440.........450.........460.........470.........480
Sequence  TANNNGKTTVDGKDSTGTEIAGNNGKVIQDGDLDVSGGGHGIDITGDSATVDNKGTMTVT
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   .........490.........500.........510.........520.........530.........540
Sequence  DPESIGIQIDGDQAIVNNEGESTITNGGTGTQINGNDATANNSGKTTVDGKDSTGTKIAG
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   .........550.........560.........570.........580.........590.........600
Sequence  NIGIVNLDGSLTVTGGAHGVENIGDNGTVNNKGDIVVSDTGSIGVLINGEGATVSNTGDV
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   .........610.........620.........630.........640.........650.........660
Sequence  NVSNEATGFSITTNSGKVSLAGSMQVGDFSTGVDLNGNNNSVTLAAKDLKVVGQKATGIN
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   .........670.........680.........690.........700.........710.........720
Sequence  VSGDANTVNITGNVLVDKDKTADNAAEYFFDPSVGINVYGSDNNVTLDGKLTVVSDSEVT
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   .........730.........740.........750.........760.........770.........780
Sequence  SRQSNLFDGSAEKTSGLVVIGDGNTVNMNGGLELIGEKNALADGSQVTSLRTGYSYTSVI
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   .........790.........800.........810.........820.........830.........840
Sequence  VVSGESSVYLNGDTTISGEFPLGFAGVIRVQDKALLEIGSGATLTMQDIDSFEHHGTRTV
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   .........850.........860.........870.........880.........890.........900
Sequence  EIQNLGFAFVTGENTTGINSGTISLLQNGKDPAPSPIVLLATNGGSATNAGTITGKVTEQ
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   .........910.........920.........930.........940.........950.........960
Sequence  HSVFNKYSTGTSNSFIFNNDVSSITGLVAQSNSTIINTDSGIIDLYGRGSVGMLAIADST
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   .........970.........980.........990.........1000.........1010.........1020
Sequence  AENQGKITLDSMWVDANDTTAMRDIASNSAIDFGTGVGVGTDSYSGAGKNATAINQLGGV
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   .........1030.........1040.........1050.........1060.........1070.........1080
Sequence  ITIYNAGAGMAAYGASNTVINQGTINLEKNGNYDDSLAANTLVGMAVYEHGTAINDQTGV
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   .........1090.........1100.........1110.........1120.........1130.........1140
Sequence  ININVGTGQAFYNDGTGTIVNYGTICTFGVCQSGNEYNNTDDFTSLIYTGGDTITRSGET
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   .........1150.........1160.........1170.........1180.........1190.........1200
Sequence  VTLNKSAAVTDKLAGNVVNSGTLSGDQITVSSGLLENTSGGIINNLVKLDKGAVIKNAGV
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   .........1210.........1220.........1230.........1240.........1250.........1260
Sequence  MTNNVDVSGGILNNAGEMTAQITMNAGADSSLVNNTGTINKIVQNAGVFNNSGSVTGRMM
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   .........1270.........1280.........1290.........1300.........1310.........1320
Sequence  SAGGVFNNQTDGAIMRGAALTGTAVANNEGTWNLGSSSEGNNTGMLEVNNNSAFNNRGEF
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   .........1330.........1340.........1350.........1360.........1370.........1380
Sequence  ILDNDKNAVHINQSGTLYNTGHMNISNSSHNGAVNMWGGNGRFINDGTIDVSAKSLVVSA
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   .........1390.........1400.........1410.........1420.........1430.........1440
Sequence  NNAGDQNAFFWNQDNGVINFDHDSASAVKVTHSNFIAQNDGIMNISGTGAVAMEGDKNAQ
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   .........1450.........1460.........1470.........1480.........1490.........1500
Sequence  LVNNGTINLGTAGTTDTGMIGMQLDANATADAVIENNGTINIFANDSFAFSVLGTVGHVV
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   .........1510.........1520.........1530.........1540.........1550.........1560
Sequence  NNGTVVIADGVTGSGLIKQGDSINVEGMNGNNGNSSEVHYGDYTLPDVPKPNTVSVTSGS
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   .........1570.........1580.........1590.........1600.........1610.........1620
Sequence  DEAGGSMNNLNGYVVGTNVNGSAGKLKVNNASMNGVEINTGFTAGTADTTVSFDNVVEGS
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   .........1630.........1640.........1650.........1660.........1670.........1680
Sequence  NLTDADAITSTSVVWTAKGSTDASGNVDVTMSKNAYTDVATDASVNDIAKALDAGYTNNE
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   .........1690.........1700.........1710.........1720.........1730.........1740
Sequence  LFTSLNVGTTAELNSALKQVSGSQATTVFREARVLSNRFSMLADAAPKVGNGLAFNVVAK
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   .........1750.........1760.........1770.........1780.........1790.........1800
Sequence  GDPRAELGNNTEYDMLALRKTIDLSESQTMSLEYGIARLDGDGAQKAGDNGVTGGYSQFF
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   .........1810.........1820.........1830.........1840.........1850.........1860
Sequence  GLKHQMSFDNGMNWNNALRYDVHNLDSSRSIAFGNTNKTADTDVKQQYLEFRSEGAKTFE
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   .........1870.........1880.........1890.........1900.........1910.........1920
Sequence  PSEGLKVTPYAGVKLRHTLEGGYQERNAGDFNLNMNSGSETAVDSIVGLKLDYAGKDGWS
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   .........1930.........1940.........1950.........1960.........1970.........1980
Sequence  ASATLEGGPNLSYAKSQRTASLAGAGSQHFNVDDGQKGGGINSLTSVGVKYSSKESSLNL
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   .........1990.........2000...
Sequence  DAYNWKEDGISDKGVMLNFKKTF
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Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 3kvn chain A

3D model

Region: 1695 - 2003
Aligned: 308
Modelled: 308
Confidence: 100.0%
Identity: 14%
PDB header:hydrolase
Chain: A: PDB Molecule:esterase esta;
PDBTitle: crystal structure of the full-length autotransporter esta from2 pseudomonas aeruginosa

Phyre2

PDB 3slj chain A

3D model

Region: 1689 - 2003
Aligned: 296
Modelled: 296
Confidence: 100.0%
Identity: 15%
PDB header:protein transport
Chain: A: PDB Molecule:serine protease espp;
PDBTitle: pre-cleavage structure of the autotransporter espp - n1023a mutant

Phyre2

PDB 1uyn chain X

3D model

Region: 1701 - 2003
Aligned: 277
Modelled: 277
Confidence: 99.9%
Identity: 13%
Fold: Transmembrane beta-barrels
Superfamily: Autotransporter
Family: Autotransporter

Phyre2

PDB 3qq2 chain C

3D model

Region: 1732 - 2003
Aligned: 239
Modelled: 239
Confidence: 99.9%
Identity: 18%
PDB header:membrane protein/protein transport
Chain: C: PDB Molecule:brka autotransporter;
PDBTitle: crystal structure of the beta domain of the bordetella autotransporter2 brka

Phyre2

PDB 3aeh chain B

3D model

Region: 1690 - 2003
Aligned: 264
Modelled: 264
Confidence: 99.9%
Identity: 16%
PDB header:hydrolase
Chain: B: PDB Molecule:hemoglobin-binding protease hbp autotransporter;
PDBTitle: integral membrane domain of autotransporter hbp

Phyre2

PDB 2qom chain B

3D model

Region: 1726 - 2003
Aligned: 259
Modelled: 259
Confidence: 99.9%
Identity: 12%
PDB header:hydrolase
Chain: B: PDB Molecule:serine protease espp;
PDBTitle: the crystal structure of the e.coli espp autotransporter beta-domain.

Phyre2

PDB 2x27 chain X

3D model

Region: 1771 - 1971
Aligned: 186
Modelled: 186
Confidence: 98.0%
Identity: 13%
PDB header:membrane protein
Chain: X: PDB Molecule:outer membrane protein oprg;
PDBTitle: crystal structure of the outer membrane protein oprg from2 pseudomonas aeruginosa

Phyre2

PDB 3qra chain A

3D model

Region: 1775 - 2003
Aligned: 145
Modelled: 145
Confidence: 97.8%
Identity: 17%
PDB header:cell invasion
Chain: A: PDB Molecule:attachment invasion locus protein;
PDBTitle: the crystal structure of ail, the attachment invasion locus protein of2 yersinia pestis

Phyre2

PDB 2f1t chain B

3D model

Region: 1771 - 1971
Aligned: 179
Modelled: 179
Confidence: 97.3%
Identity: 13%
PDB header:membrane protein
Chain: B: PDB Molecule:outer membrane protein w;
PDBTitle: outer membrane protein ompw

Phyre2

PDB 1qjp chain A

3D model

Region: 1770 - 1972
Aligned: 131
Modelled: 131
Confidence: 97.2%
Identity: 11%
Fold: Transmembrane beta-barrels
Superfamily: OMPA-like
Family: Outer membrane protein

Phyre2

PDB 2jmm chain A

3D model

Region: 1806 - 2003
Aligned: 146
Modelled: 146
Confidence: 97.1%
Identity: 18%
PDB header:membrane protein
Chain: A: PDB Molecule:outer membrane protein a;
PDBTitle: nmr solution structure of a minimal transmembrane beta-2 barrel platform protein

Phyre2

PDB 3nb3 chain C

3D model

Region: 1770 - 1972
Aligned: 131
Modelled: 131
Confidence: 96.7%
Identity: 10%
PDB header:virus
Chain: C: PDB Molecule:outer membrane protein a;
PDBTitle: the host outer membrane proteins ompa and ompc are packed at specific2 sites in the shigella phage sf6 virion as structural components

Phyre2

PDB 1p4t chain A

3D model

Region: 1771 - 1971
Aligned: 149
Modelled: 149
Confidence: 96.5%
Identity: 16%
Fold: Transmembrane beta-barrels
Superfamily: OMPA-like
Family: Outer membrane protein

Phyre2

PDB 1g90 chain A

3D model

Region: 1771 - 1958
Aligned: 163
Modelled: 163
Confidence: 96.3%
Identity: 13%
Fold: Transmembrane beta-barrels
Superfamily: OMPA-like
Family: Outer membrane protein

Phyre2

PDB 1qj8 chain A

3D model

Region: 1776 - 1927
Aligned: 125
Modelled: 125
Confidence: 95.4%
Identity: 12%
Fold: Transmembrane beta-barrels
Superfamily: OMPA-like
Family: Outer membrane protein

Phyre2

PDB 2k0l chain A

3D model

Region: 1725 - 1917
Aligned: 176
Modelled: 176
Confidence: 94.4%
Identity: 11%
PDB header:membrane protein
Chain: A: PDB Molecule:outer membrane protein a;
PDBTitle: nmr structure of the transmembrane domain of the outer2 membrane protein a from klebsiella pneumoniae in dhpc3 micelles.

Phyre2

PDB 2vdf chain A domain 1

3D model

Region: 1759 - 1911
Aligned: 136
Modelled: 136
Confidence: 92.8%
Identity: 15%
Fold: Transmembrane beta-barrels
Superfamily: OMPT-like
Family: Outer membrane adhesin/invasin OpcA

Phyre2

PDB 1t16 chain A

3D model

Region: 1752 - 2003
Aligned: 245
Modelled: 245
Confidence: 90.7%
Identity: 12%
Fold: Transmembrane beta-barrels
Superfamily: Porins
Family: Outer membrane protein transport protein

Phyre2

PDB 3dwo chain X

3D model

Region: 1754 - 1986
Aligned: 202
Modelled: 202
Confidence: 90.5%
Identity: 16%
PDB header:membrane protein
Chain: X: PDB Molecule:probable outer membrane protein;
PDBTitle: crystal structure of a pseudomonas aeruginosa fadl homologue

Phyre2

PDB 2lhf chain A

3D model

Region: 1770 - 1972
Aligned: 177
Modelled: 177
Confidence: 88.6%
Identity: 12%
PDB header:membrane protein
Chain: A: PDB Molecule:outer membrane protein h1;
PDBTitle: solution structure of outer membrane protein h (oprh) from p.2 aeruginosa in dhpc micelles

Phyre2

PDB 1vp5 chain A

3D model

Region: 3 - 74
Aligned: 66
Modelled: 66
Confidence: 64.2%
Identity: 17%
Fold: TIM beta/alpha-barrel
Superfamily: NAD(P)-linked oxidoreductase
Family: Aldo-keto reductases (NADP)

Phyre2
1

c3kvnA_
2

c3sljA_
3

d1uynx_
4

c3qq2C_
5

c3aehB_
6

c2qomB_
7

c2x27X_
8

c3qraA_
9

c2f1tB_
10

d1qjpa_
11

c2jmmA_
12

c3nb3C_
13

d1p4ta_
14

d1g90a_
15

d1qj8a_
16

c2k0lA_
17

d2vdfa1
18

d1t16a_
19

c3dwoX_
20

c2lhfA_
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d1vp5a_
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Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c3kvnA_



100.0 14 PDB header:hydrolase
Chain: A: PDB Molecule:esterase esta;
PDBTitle: crystal structure of the full-length autotransporter esta from2 pseudomonas aeruginosa
2c3sljA_



100.0 15 PDB header:protein transport
Chain: A: PDB Molecule:serine protease espp;
PDBTitle: pre-cleavage structure of the autotransporter espp - n1023a mutant
3d1uynx_



99.9 13 Fold:Transmembrane beta-barrels
Superfamily:Autotransporter
Family:Autotransporter
4c3qq2C_



99.9 18 PDB header:membrane protein/protein transport
Chain: C: PDB Molecule:brka autotransporter;
PDBTitle: crystal structure of the beta domain of the bordetella autotransporter2 brka
5c3aehB_



99.9 16 PDB header:hydrolase
Chain: B: PDB Molecule:hemoglobin-binding protease hbp autotransporter;
PDBTitle: integral membrane domain of autotransporter hbp
6c2qomB_



99.9 12 PDB header:hydrolase
Chain: B: PDB Molecule:serine protease espp;
PDBTitle: the crystal structure of the e.coli espp autotransporter beta-domain.
7c2x27X_



98.0 13 PDB header:membrane protein
Chain: X: PDB Molecule:outer membrane protein oprg;
PDBTitle: crystal structure of the outer membrane protein oprg from2 pseudomonas aeruginosa
8c3qraA_



97.8 17 PDB header:cell invasion
Chain: A: PDB Molecule:attachment invasion locus protein;
PDBTitle: the crystal structure of ail, the attachment invasion locus protein of2 yersinia pestis
9c2f1tB_



97.3 13 PDB header:membrane protein
Chain: B: PDB Molecule:outer membrane protein w;
PDBTitle: outer membrane protein ompw
10d1qjpa_



97.2 11 Fold:Transmembrane beta-barrels
Superfamily:OMPA-like
Family:Outer membrane protein
11c2jmmA_



97.1 18 PDB header:membrane protein
Chain: A: PDB Molecule:outer membrane protein a;
PDBTitle: nmr solution structure of a minimal transmembrane beta-2 barrel platform protein
12c3nb3C_



96.7 10 PDB header:virus
Chain: C: PDB Molecule:outer membrane protein a;
PDBTitle: the host outer membrane proteins ompa and ompc are packed at specific2 sites in the shigella phage sf6 virion as structural components
13d1p4ta_



96.5 16 Fold:Transmembrane beta-barrels
Superfamily:OMPA-like
Family:Outer membrane protein
14d1g90a_



96.3 13 Fold:Transmembrane beta-barrels
Superfamily:OMPA-like
Family:Outer membrane protein
15d1qj8a_



95.4 12 Fold:Transmembrane beta-barrels
Superfamily:OMPA-like
Family:Outer membrane protein
16c2k0lA_



94.4 11 PDB header:membrane protein
Chain: A: PDB Molecule:outer membrane protein a;
PDBTitle: nmr structure of the transmembrane domain of the outer2 membrane protein a from klebsiella pneumoniae in dhpc3 micelles.
17d2vdfa1



92.8 15 Fold:Transmembrane beta-barrels
Superfamily:OMPT-like
Family:Outer membrane adhesin/invasin OpcA
18d1t16a_



90.7 12 Fold:Transmembrane beta-barrels
Superfamily:Porins
Family:Outer membrane protein transport protein
19c3dwoX_



90.5 16 PDB header:membrane protein
Chain: X: PDB Molecule:probable outer membrane protein;
PDBTitle: crystal structure of a pseudomonas aeruginosa fadl homologue
20c2lhfA_



88.6 12 PDB header:membrane protein
Chain: A: PDB Molecule:outer membrane protein h1;
PDBTitle: solution structure of outer membrane protein h (oprh) from p.2 aeruginosa in dhpc micelles
21d2zfga1



not modelled 87.5 18 Fold:Transmembrane beta-barrels
Superfamily:Porins
Family:Porin
22c2wjqA_



not modelled 86.9 12 PDB header:transport protein
Chain: A: PDB Molecule:probable n-acetylneuraminic acid outer membrane channel
PDBTitle: nanc porin structure in hexagonal crystal form.
23c2ervA_



not modelled 83.2 16 PDB header:membrane protein
Chain: A: PDB Molecule:hypothetical protein paer03002360;
PDBTitle: crystal structure of the outer membrane enzyme pagl
24c3dzmB_



not modelled 79.7 15 PDB header:unknown function
Chain: B: PDB Molecule:hypothetical conserved protein;
PDBTitle: crystal structure of a major outer membrane protein from thermus2 thermophilus hb27
25c3nsgA_



not modelled 75.0 15 PDB header:membrane protein
Chain: A: PDB Molecule:outer membrane protein f;
PDBTitle: crystal structure of ompf, an outer membrane protein from salmonella2 typhi
26c3bryB_



not modelled 69.5 11 PDB header:transport protein
Chain: B: PDB Molecule:tbux;
PDBTitle: crystal structure of the ralstonia pickettii toluene2 transporter tbux
27d2fgqx1



not modelled 67.8 9 Fold:Transmembrane beta-barrels
Superfamily:Porins
Family:Porin
28c2iwvD_



not modelled 65.2 11 PDB header:ion channel
Chain: D: PDB Molecule:outer membrane protein g;
PDBTitle: structure of the monomeric outer membrane porin ompg in the2 open and closed conformation
29d1vp5a_



64.2 17 Fold:TIM beta/alpha-barrel
Superfamily:NAD(P)-linked oxidoreductase
Family:Aldo-keto reductases (NADP)
30d1osma_



not modelled 64.1 16 Fold:Transmembrane beta-barrels
Superfamily:Porins
Family:Porin
31d1c9wa_



not modelled 57.9 26 Fold:TIM beta/alpha-barrel
Superfamily:NAD(P)-linked oxidoreductase
Family:Aldo-keto reductases (NADP)
32d1tlya_



not modelled 54.6 13 Fold:Transmembrane beta-barrels
Superfamily:Tsx-like channel
Family:Tsx-like channel
33d3eaua1



not modelled 53.9 20 Fold:TIM beta/alpha-barrel
Superfamily:NAD(P)-linked oxidoreductase
Family:Aldo-keto reductases (NADP)
34c2xueB_



not modelled 52.3 23 PDB header:oxidoreductase
Chain: B: PDB Molecule:lysine-specific demethylase 6b;
PDBTitle: crystal structure of jmjd3
35c3flpJ_



not modelled 51.6 17 PDB header:sugar binding protein
Chain: J: PDB Molecule:sap-like pentraxin;
PDBTitle: crystal structure of native heptameric sap-like pentraxin2 from limulus polyphemus
36c3n6qF_



not modelled 50.8 12 PDB header:oxidoreductase
Chain: F: PDB Molecule:yghz aldo-keto reductase;
PDBTitle: crystal structure of yghz from e. coli
37c3n50E_



not modelled 48.9 25 PDB header:transcription
Chain: E: PDB Molecule:transcription factor coe3;
PDBTitle: human early b-cell factor 3 (ebf3) ipt/tig and hlhlh domains
38d1i78a_



not modelled 48.8 10 Fold:Transmembrane beta-barrels
Superfamily:OMPT-like
Family:Outer membrane protease OMPT
39d1vqoa1



not modelled 47.6 23 Fold:SH3-like barrel
Superfamily:Translation proteins SH3-like domain
Family:C-terminal domain of ribosomal protein L2
40c2z4lC_



not modelled 46.4 25 PDB header:ribosome
Chain: C: PDB Molecule:50s ribosomal protein l2;
PDBTitle: crystal structure of the bacterial ribosome from escherichia2 coli in complex with paromomycin and ribosome recycling3 factor (rrf). this file contains the 50s subunit of the4 first 70s ribosome, with paromomycin and rrf bound. the5 entire crystal structure contains two 70s ribosomes and is6 described in remark 400.
41c2k4tA_



not modelled 45.0 13 PDB header:membrane protein,apoptosis
Chain: A: PDB Molecule:voltage-dependent anion-selective channel
PDBTitle: solution structure of human vdac-1 in ldao micelles
42c3lutA_



not modelled 43.7 20 PDB header:membrane protein
Chain: A: PDB Molecule:voltage-gated potassium channel subunit beta-2;
PDBTitle: a structural model for the full-length shaker potassium channel kv1.2
43c3erpA_



not modelled 41.4 14 PDB header:oxidoreductase
Chain: A: PDB Molecule:putative oxidoreductase;
PDBTitle: structure of idp01002, a putative oxidoreductase from and essential2 gene of salmonella typhimurium
44c2vqiA_



not modelled 41.3 9 PDB header:transport
Chain: A: PDB Molecule:outer membrane usher protein papc;
PDBTitle: structure of the p pilus usher (papc) translocation pore
45c3up8B_



not modelled 41.0 20 PDB header:oxidoreductase
Chain: B: PDB Molecule:putative 2,5-diketo-d-gluconic acid reductase b;
PDBTitle: crystal structure of a putative 2,5-diketo-d-gluconic acid reductase b
46d1lqaa_



not modelled 39.6 18 Fold:TIM beta/alpha-barrel
Superfamily:NAD(P)-linked oxidoreductase
Family:Aldo-keto reductases (NADP)
47c3jsbA_



not modelled 38.1 34 PDB header:rna binding protein
Chain: A: PDB Molecule:rna-directed rna polymerase;
PDBTitle: crystal structure of the n-terminal domain of the lymphocytic2 choriomeningitis virus l protein
48d1l1fa2



not modelled 36.8 27 Fold:Aminoacid dehydrogenase-like, N-terminal domain
Superfamily:Aminoacid dehydrogenase-like, N-terminal domain
Family:Aminoacid dehydrogenases
49c1ynpA_



not modelled 36.3 16 PDB header:oxidoreductase
Chain: A: PDB Molecule:oxidoreductase;
PDBTitle: aldo-keto reductase akr11c1 from bacillus halodurans (apo form)
50d1pz1a_



not modelled 36.2 16 Fold:TIM beta/alpha-barrel
Superfamily:NAD(P)-linked oxidoreductase
Family:Aldo-keto reductases (NADP)
51d1mi3a_



not modelled 36.1 17 Fold:TIM beta/alpha-barrel
Superfamily:NAD(P)-linked oxidoreductase
Family:Aldo-keto reductases (NADP)
52c2ki0A_



not modelled 35.9 64 PDB header:de novo protein
Chain: A: PDB Molecule:ds119;
PDBTitle: nmr structure of a de novo designed beta alpha beta
53c2ke4A_



not modelled 34.9 25 PDB header:membrane protein
Chain: A: PDB Molecule:cdc42-interacting protein 4;
PDBTitle: the nmr structure of the tc10 and cdc42 interacting domain2 of cip4
54d1iyjb1



not modelled 34.1 29 Fold:BRCA2 helical domain
Superfamily:BRCA2 helical domain
Family:BRCA2 helical domain
55c3brzA_



not modelled 34.0 12 PDB header:transport protein
Chain: A: PDB Molecule:todx;
PDBTitle: crystal structure of the pseudomonas putida toluene2 transporter todx
56c2eo2A_



not modelled 33.6 36 PDB header:oxidoreductase
Chain: A: PDB Molecule:adult male hypothalamus cdna, riken full-length
PDBTitle: solution structure of the insertion region (510-573) of2 fthfs domain from mouse methylenetetrahydrofolate3 dehydrogenase (nadp+ dependent) 1-like protein
57d2dlqa1



not modelled 32.8 54 Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
58d2j01d1



not modelled 31.6 22 Fold:SH3-like barrel
Superfamily:Translation proteins SH3-like domain
Family:C-terminal domain of ribosomal protein L2
59c1kqsA_



not modelled 30.2 26 PDB header:ribosome
Chain: A: PDB Molecule:ribosomal protein l2;
PDBTitle: the haloarcula marismortui 50s complexed with a2 pretranslocational intermediate in protein synthesis
60d1rl2a1



not modelled 29.9 22 Fold:SH3-like barrel
Superfamily:Translation proteins SH3-like domain
Family:C-terminal domain of ribosomal protein L2
61c3a8tA_



not modelled 29.9 17 PDB header:transferase
Chain: A: PDB Molecule:adenylate isopentenyltransferase;
PDBTitle: plant adenylate isopentenyltransferase in complex with atp
62c1vliA_



not modelled 29.8 23 PDB header:biosynthetic protein
Chain: A: PDB Molecule:spore coat polysaccharide biosynthesis protein spse;
PDBTitle: crystal structure of spore coat polysaccharide biosynthesis protein2 spse (bsu37870) from bacillus subtilis at 2.38 a resolution
63d1tuza_



not modelled 29.8 27 Fold:EF Hand-like
Superfamily:EF-hand
Family:EF-hand modules in multidomain proteins
64c2ns2A_



not modelled 29.7 30 PDB header:cell cycle
Chain: A: PDB Molecule:spindlin-1;
PDBTitle: crystal structure of spindlin1
65d3proc2



not modelled 29.3 55 Fold:Alpha-lytic protease prodomain-like
Superfamily:Alpha-lytic protease prodomain
Family:Alpha-lytic protease prodomain
66c3h7rA_



not modelled 29.3 13 PDB header:oxidoreductase
Chain: A: PDB Molecule:aldo-keto reductase;
PDBTitle: crystal structure of the plant stress-response enzyme akr4c8
67c2ftcB_



not modelled 29.2 17 PDB header:ribosome
Chain: B: PDB Molecule:mitochondrial ribosomal protein l2;
PDBTitle: structural model for the large subunit of the mammalian mitochondrial2 ribosome
68d1vlia2



not modelled 29.2 23 Fold:TIM beta/alpha-barrel
Superfamily:Aldolase
Family:NeuB-like
69d1j96a_



not modelled 28.9 19 Fold:TIM beta/alpha-barrel
Superfamily:NAD(P)-linked oxidoreductase
Family:Aldo-keto reductases (NADP)
70d1frba_



not modelled 28.8 23 Fold:TIM beta/alpha-barrel
Superfamily:NAD(P)-linked oxidoreductase
Family:Aldo-keto reductases (NADP)
71d2zjra1



not modelled 28.7 29 Fold:SH3-like barrel
Superfamily:Translation proteins SH3-like domain
Family:C-terminal domain of ribosomal protein L2
72c3buvB_



not modelled 28.5 20 PDB header:oxidoreductase
Chain: B: PDB Molecule:3-oxo-5-beta-steroid 4-dehydrogenase;
PDBTitle: crystal structure of human delta(4)-3-ketosteroid 5-beta-reductase in2 complex with nadp and hepes. resolution: 1.35 a.
73c3njqB_



not modelled 28.5 21 PDB header:viral protein/inhibitor
Chain: B: PDB Molecule:orf 17;
PDBTitle: crystal structure of kaposi's sarcoma-associated herpesvirus protease2 in complex with dimer disruptor
74c3d5bD_



not modelled 28.5 18 PDB header:ribosome
Chain: D: PDB Molecule:50s ribosomal protein l2;
PDBTitle: structural basis for translation termination on the 70s ribosome. this2 file contains the 50s subunit of one 70s ribosome. the entire crystal3 structure contains two 70s ribosomes as described in remark 400.
75c1tkeA_



not modelled 28.1 29 PDB header:ligase
Chain: A: PDB Molecule:threonyl-trna synthetase;
PDBTitle: crystal structure of the editing domain of threonyl-trna2 synthetase complexed with serine
76d1bvua2



not modelled 28.0 30 Fold:Aminoacid dehydrogenase-like, N-terminal domain
Superfamily:Aminoacid dehydrogenase-like, N-terminal domain
Family:Aminoacid dehydrogenases
77c1vbjB_



not modelled 27.7 17 PDB header:oxidoreductase
Chain: B: PDB Molecule:prostaglandin f synthase;
PDBTitle: the crystal structure of prostaglandin f synthase from2 trypanosoma brucei
78d1hqta_



not modelled 27.4 21 Fold:TIM beta/alpha-barrel
Superfamily:NAD(P)-linked oxidoreductase
Family:Aldo-keto reductases (NADP)
79c3f7jB_



not modelled 27.4 17 PDB header:oxidoreductase
Chain: B: PDB Molecule:yvgn protein;
PDBTitle: b.subtilis yvgn
80c3h7uA_



not modelled 26.8 17 PDB header:oxidoreductase
Chain: A: PDB Molecule:aldo-keto reductase;
PDBTitle: crystal structure of the plant stress-response enzyme akr4c9
81d1ah4a_



not modelled 26.6 30 Fold:TIM beta/alpha-barrel
Superfamily:NAD(P)-linked oxidoreductase
Family:Aldo-keto reductases (NADP)
82d1b65a_



not modelled 26.4 23 Fold:DmpA/ArgJ-like
Superfamily:DmpA/ArgJ-like
Family:DmpA-like
83c2zkra_



not modelled 26.2 23 PDB header:ribosomal protein/rna
Chain: A: PDB Molecule:rna expansion segment es3;
PDBTitle: structure of a mammalian ribosomal 60s subunit within an2 80s complex obtained by docking homology models of the rna3 and proteins into an 8.7 a cryo-em map
84d1qr0a1



not modelled 25.9 10 Fold:4'-phosphopantetheinyl transferase
Superfamily:4'-phosphopantetheinyl transferase
Family:4'-Phosphopantetheinyl transferase SFP
85c2ze5A_



not modelled 25.7 16 PDB header:transferase
Chain: A: PDB Molecule:isopentenyl transferase;
PDBTitle: crystal structure of adenosine phosphate-isopentenyltransferase
86d1afsa_



not modelled 25.6 21 Fold:TIM beta/alpha-barrel
Superfamily:NAD(P)-linked oxidoreductase
Family:Aldo-keto reductases (NADP)
87c2j9uB_



not modelled 25.5 26 PDB header:protein transport
Chain: B: PDB Molecule:vacuolar protein sorting-associated protein 36;
PDBTitle: 2 angstrom x-ray structure of the yeast escrt-i vps28 c-2 terminus in complex with the nzf-n domain from escrt-ii
88d2j9ub1



not modelled 25.5 26 Fold:Rubredoxin-like
Superfamily:Ran binding protein zinc finger-like
Family:Ran binding protein zinc finger-like
89c3b3dA_



not modelled 25.4 16 PDB header:oxidoreductase
Chain: A: PDB Molecule:putative morphine dehydrogenase;
PDBTitle: b.subtilis ytbe
90d1ur3m_



not modelled 25.2 12 Fold:TIM beta/alpha-barrel
Superfamily:NAD(P)-linked oxidoreductase
Family:Aldo-keto reductases (NADP)
91d2alra_



not modelled 25.2 24 Fold:TIM beta/alpha-barrel
Superfamily:NAD(P)-linked oxidoreductase
Family:Aldo-keto reductases (NADP)
92c1htoB_



not modelled 25.0 29 PDB header:ligase
Chain: B: PDB Molecule:glutamine synthetase;
PDBTitle: crystallographic structure of a relaxed glutamine synthetase from2 mycobacterium tuberculosis
93d1s1pa_



not modelled 24.9 17 Fold:TIM beta/alpha-barrel
Superfamily:NAD(P)-linked oxidoreductase
Family:Aldo-keto reductases (NADP)
94d1miua1



not modelled 24.9 26 Fold:BRCA2 helical domain
Superfamily:BRCA2 helical domain
Family:BRCA2 helical domain
95d1q5ma_



not modelled 24.9 21 Fold:TIM beta/alpha-barrel
Superfamily:NAD(P)-linked oxidoreductase
Family:Aldo-keto reductases (NADP)
96c2yfqA_



not modelled 24.8 40 PDB header:oxidoreductase
Chain: A: PDB Molecule:nad-specific glutamate dehydrogenase;
PDBTitle: crystal structure of glutamate dehydrogenase from2 peptoniphilus asaccharolyticus
97d2zdra2



not modelled 24.6 24 Fold:TIM beta/alpha-barrel
Superfamily:Aldolase
Family:NeuB-like
98c2gyaA_



not modelled 24.6 17 PDB header:ribosome
Chain: A: PDB Molecule:50s ribosomal protein l2;
PDBTitle: structure of the 50s subunit of a pre-translocational e.2 coli ribosome obtained by fitting atomic models for rna and3 protein components into cryo-em map emd-1056
99c3fozB_



not modelled 24.4 25 PDB header:transferase/rna
Chain: B: PDB Molecule:trna delta(2)-isopentenylpyrophosphate transferase;
PDBTitle: structure of e. coli isopentenyl-trna transferase in complex with e.2 coli trna(phe)
100d1gtma2



not modelled 24.3 33 Fold:Aminoacid dehydrogenase-like, N-terminal domain
Superfamily:Aminoacid dehydrogenase-like, N-terminal domain
Family:Aminoacid dehydrogenases
101c4a1cA_



not modelled 24.1 20 PDB header:ribosome
Chain: A: PDB Molecule:rpl8;
PDBTitle: t.thermophila 60s ribosomal subunit in complex with2 initiation factor 6. this file contains 5s rrna,3 5.8s rrna and proteins of molecule 4.
102c2j8pA_



not modelled 23.4 31 PDB header:nuclear protein
Chain: A: PDB Molecule:cleavage stimulation factor 64 kda subunit;
PDBTitle: nmr structure of c-terminal domain of human cstf-64
103c3jyzA_



not modelled 23.3 25 PDB header:structural protein
Chain: A: PDB Molecule:type iv pilin structural subunit;
PDBTitle: crystal structure of pseudomonas aeruginosa (strain:2 pa110594) typeiv pilin in space group p41212
104c1rl2A_



not modelled 23.2 22 PDB header:ribosomal protein
Chain: A: PDB Molecule:protein (ribosomal protein l2);
PDBTitle: ribosomal protein l2 rna-binding domain from bacillus2 stearothermophilus
105d1us0a_



not modelled 22.9 21 Fold:TIM beta/alpha-barrel
Superfamily:NAD(P)-linked oxidoreductase
Family:Aldo-keto reductases (NADP)
106c2b66D_



not modelled 22.8 22 PDB header:ribosome
Chain: D: PDB Molecule:50s ribosomal protein l2;
PDBTitle: 50s ribosomal subunit from a crystal structure of release factor rf1,2 trnas and mrna bound to the ribosome. this file contains the 50s3 subunit from a crystal structure of release factor rf1, trnas and4 mrna bound to the ribosome and is described in remark 400
107c2oz6A_



not modelled 22.7 23 PDB header:dna binding protein
Chain: A: PDB Molecule:virulence factor regulator;
PDBTitle: crystal structure of virulence factor regulator from pseudomonas2 aeruginosa in complex with camp
108d2pfxa1



not modelled 22.5 28 Fold:AhpD-like
Superfamily:AhpD-like
Family:Atu0492-like
109d1qwka_



not modelled 22.4 21 Fold:TIM beta/alpha-barrel
Superfamily:NAD(P)-linked oxidoreductase
Family:Aldo-keto reductases (NADP)
110c3bboE_



not modelled 22.4 33 PDB header:ribosome
Chain: E: PDB Molecule:ribosomal protein l2;
PDBTitle: homology model for the spinach chloroplast 50s subunit2 fitted to 9.4a cryo-em map of the 70s chlororibosome
111c2hb0B_



not modelled 21.8 40 PDB header:cell adhesion
Chain: B: PDB Molecule:cfa/i fimbrial subunit e;
PDBTitle: crystal structure of cfae, the adhesive subunit of cfa/i2 fimbria of enterotoxigenic escherichia coli
112c2ov3A_



not modelled 21.8 8 PDB header:transport protein
Chain: A: PDB Molecule:periplasmic binding protein component of an abc
PDBTitle: crystal structure of 138-173 znua deletion mutant plus zinc2 bound
113d2slia1



not modelled 21.8 36 Fold:Concanavalin A-like lectins/glucanases
Superfamily:Concanavalin A-like lectins/glucanases
Family:Leech intramolecular trans-sialidase, N-terminal domain
114c1kn7A_



not modelled 21.8 42 PDB header:membrane protein
Chain: A: PDB Molecule:voltage-gated potassium channel protein kv1.4;
PDBTitle: solution structure of the tandem inactivation domain2 (residues 1-75) of potassium channel rck4 (kv1.4)
115c3ohnA_



not modelled 21.7 7 PDB header:membrane protein
Chain: A: PDB Molecule:outer membrane usher protein fimd;
PDBTitle: crystal structure of the fimd translocation domain
116d1u04a1



not modelled 21.7 42 Fold:SH3-like barrel
Superfamily:PAZ domain
Family:PAZ domain
117c1zgdB_



not modelled 21.6 10 PDB header:plant protein
Chain: B: PDB Molecule:chalcone reductase;
PDBTitle: chalcone reductase complexed with nadp+ at 1.7 angstrom2 resolution
118c2drhD_



not modelled 21.6 15 PDB header:structural genomics, unknown function
Chain: D: PDB Molecule:361aa long hypothetical d-aminopeptidase;
PDBTitle: crystal structure of the ph0078 protein from pyrococcus horikoshii ot3
119c2b99A_



not modelled 21.5 31 PDB header:transferase
Chain: A: PDB Molecule:riboflavin synthase;
PDBTitle: crystal structure of an archaeal pentameric riboflavin2 synthase complex with a substrate analog inhibitor
120c2ql8A_



not modelled 21.3 15 PDB header:oxidoreductase
Chain: A: PDB Molecule:putative redox protein;
PDBTitle: crystal structure of a putative redox protein (lsei_0423) from2 lactobacillus casei atcc 334 at 1.50 a resolution

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite



Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0