PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c3flpJ_

Fold library id	PDB Header	Molecule	Title
c3flpJ_	PDB header: sugar binding protein	Chain: J: PDB Molecule: sap-like pentraxin;	PDBTitle: crystal structure of native heptameric sap-like pentraxin2 from limulus polyphemus

Links to external resources
Added to library: Tue Mar 16 12:55:53 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence A V D I R D V K I S F P G T Q N P K F P H L R F M Q T L P A V R Q L T V C Q R I K P F H R N T G Y I F S C A T S N Q D N Q F I T S M Y V K S

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
G G G
B T T B
S S
B
B S S
S S
T T
T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence D G T L N L G L Q V N A S S N K Y I S C P I E I E L G Q W Y H V C H V W S G V D G R M A V Y A N G S P C G T M E N V G K G H Q I S A G G T V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T S T T
T T S
T T T T T T S
S S T T
B
S
B

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence V I G Q E Q D K I G G G F E E Q E S W S G E L S D L Q V W D E A L T T H Q V S T V A S C N G I R P R G N V I S W M E D S F V A D D G V I V G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S S
S B T T B
G G G
S S
T T S
S S T T T S
S S

. . . . . . .

Sequence I S H M C S L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	A	V	D	I	R	D	V	K	I	S	F	P	G	T	Q	N	P	K	F	P	H	L	R	F	M	Q	T	L	P	A	V	R	Q	L	T	V	C	Q	R	I	K	P	F	H	R	N	T	G	Y	I	F	S	C	A	T	S	N	Q	D	N	Q	F	I	T	S	M	Y	V	K	S
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				G	G	G									B	T	T	B							S	S		B			B	S											S		S	S										T	T													T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	D	G	T	L	N	L	G	L	Q	V	N	A	S	S	N	K	Y	I	S	C	P	I	E	I	E	L	G	Q	W	Y	H	V	C	H	V	W	S	G	V	D	G	R	M	A	V	Y	A	N	G	S	P	C	G	T	M	E	N	V	G	K	G	H	Q	I	S	A	G	G	T	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T	S									T	T														T	T	S										T	T	T	T							T	T							S		S	S	T	T			B		S		B
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	V	I	G	Q	E	Q	D	K	I	G	G	G	F	E	E	Q	E	S	W	S	G	E	L	S	D	L	Q	V	W	D	E	A	L	T	T	H	Q	V	S	T	V	A	S	C	N	G	I	R	P	R	G	N	V	I	S	W	M	E	D	S	F	V	A	D	D	G	V	I	V	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			S	S			S	B	T	T	B				G	G	G													S	S													T	T	S						S	S			T	T	T	S						S	S
	.	.	.	.	.	.	.
Sequence	I	S	H	M	C	S	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				S	S