PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c2oz6A_

Fold library id	PDB Header	Molecule	Title
c2oz6A_	PDB header: dna binding protein	Chain: A: PDB Molecule: virulence factor regulator;	PDBTitle: crystal structure of virulence factor regulator from2 pseudomonas aeruginosa in complex with camp

Links to external resources
Added to library: Tue Mar 16 12:01:44 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence M K L K H L D K L L A H C H R R R Y T A K S T I I Y A G D R C E T L F F I I K G S V T I L I E D D D G R E M I I G Y L N S G D F F G E L G L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S
T T
T T S B
S
T T S
T T
S
T T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence F E Q E R S A W V R A K V E C E V A E I S Y A K F R E L S Q Q D S E I L Y T L G S Q M A D R L R K T T R K V G D L A F L D V T G R V A R T L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
B
S S S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 .

Sequence L D L C Q Q P D A M T H P D G M Q I K I T R Q E I G R I V G C S R E M V G R V L K S L E E Q G L V H V K G K T M V V F G T

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T S T T
T T
T S
T T S T T T

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	M	K	L	K	H	L	D	K	L	L	A	H	C	H	R	R	R	Y	T	A	K	S	T	I	I	Y	A	G	D	R	C	E	T	L	F	F	I	I	K	G	S	V	T	I	L	I	E	D	D	D	G	R	E	M	I	I	G	Y	L	N	S	G	D	F	F	G	E	L	G	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)												S	S							T	T						T	T	S	B										S									T	T	S										T	T				S		T	T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	F	E	Q	E	R	S	A	W	V	R	A	K	V	E	C	E	V	A	E	I	S	Y	A	K	F	R	E	L	S	Q	Q	D	S	E	I	L	Y	T	L	G	S	Q	M	A	D	R	L	R	K	T	T	R	K	V	G	D	L	A	F	L	D	V	T	G	R	V	A	R	T	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				B			S					S	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.
Sequence	L	D	L	C	Q	Q	P	D	A	M	T	H	P	D	G	M	Q	I	K	I	T	R	Q	E	I	G	R	I	V	G	C	S	R	E	M	V	G	R	V	L	K	S	L	E	E	Q	G	L	V	H	V	K	G	K	T	M	V	V	F	G	T
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				T	T	S	T	T					T	T																T	S															T	T	S					T	T						T