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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c2xueB_

Fold library idPDB HeaderMoleculeTitle
c2xueB_PDB header: oxidoreductaseChain: B: PDB Molecule: lysine-specific demethylase 6b;PDBTitle: crystal structure of jmjd3


Added to library: Sat Dec 31 16:43:27 2011
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence LNPPTPSIYLESKRDAFSPVLLQFCTDPRNPITVIRGLAGSLRLNLGLFSTKTLVEASGEHTVEVRTQVQ
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Known secondary structure (DSSP)






SSTS
TT
STTT

GGGGSTT

 .........80.........90.........100.........110.........120.........130.........140
Sequence QPSDENWDLTGTRQIWPCESSRSHTTIAKYAQYQASSFQESLHHIIKFGTNIDLSDAKRWKPQLQELLKL
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Known secondary structure (DSSP)

TT

B
TTSSSB
SB


TT





TTTTGGGS
 .........150.........160.........170.........180.........190.........200.........210
Sequence PAFMRVTSTGNMLSHVGHTILGMNTVQLYMKVPGSRTPGHQENNNFCSVNINIGPGDCEWFAVHEHYWET
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Known secondary structure (DSSP)
GGGSSS
TTBGGGGSSS

TTTTS

TT


GGG
S

GGG
 .........220.........230.........240.........250.........260.........270.........280
Sequence ISAFCDRHGVDYLTGSWWPILDDLYASNIPVYRFVQRPGDLVWINAGTVHWVQATGWCNNIAWNVGPLTA
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Known secondary structure (DSSP) TT

TTTS
B


TT



TT

TT
SSS
BSS
 .........290.........300.........310.........320.........330.........340.........350
Sequence YQYQLALERYEWNEVKNVKSIVPMIHVSWNVARTVKISDPDLFKMIKFCLLQSMKHCQVQRESLVRAGKK
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Known secondary structure (DSSP) TT


SS





T

 .........360.........370.........380.........390.........400.........410.........420
Sequence IAYQGRVKDEPAYYCNECDVEVFNILFVTSNTYLVHCEGCARRRSAGLQGVVVLEQYRTEELAQAYDAFT
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Known secondary structure (DSSP)



TT



TTT


S




STTTTTT
SS


 ...
Sequence LAP
Predicted secondary structure

SS confidence


Known secondary structure (DSSP)



Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Michael Sternberg 
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