PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c2gyaA_

Fold library id	PDB Header	Molecule	Title
c2gyaA_	PDB header: ribosome	Chain: A: PDB Molecule: 50s ribosomal protein l2;	PDBTitle: structure of the 50s subunit of a pre-translocational e.2 coli ribosome obtained by fitting atomic models for rna and3 protein components into cryo-em map emd-1056

Links to external resources
Added to library: Tue Mar 16 13:28:55 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence K S G G R N N N G R I T T R H I G G G H K Q A Y R I V D F K R N K D G I P A V V E R L E Y D P N R S A N I A L V L Y K D G E R R Y I L A P K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T T S S S S S
T T T S
S
S
S S
S S
T T S
S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence G L K A G D Q I Q S G V D A A I K P G N T L P M R N I P V G S T V H N V E M K P G K G G Q L A R S A G T Y V Q I V A R D G A Y V T L R L R S

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S
S S
S T T
S T T
G G G S
S S
B
S S S S S
S S
S S S
S
S S
B
T T T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence G E M R K V E A D C R A T L G E V G N A E H M L R V L G K A G A A R W R G V R P T V R G T A M N P V D H P H G G G E G R N F G K H P V T P W

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
B
S S
B
S
S
T T S
S G G G S
S T T S
T T T
S S
T T T T
T T

. . . . . . . . . 220 . . . . . . .

Sequence G V Q T K G K K T R S N K R T D K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T T
S S
S

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

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Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	K	S	G	G	R	N	N	N	G	R	I	T	T	R	H	I	G	G	G	H	K	Q	A	Y	R	I	V	D	F	K	R	N	K	D	G	I	P	A	V	V	E	R	L	E	Y	D	P	N	R	S	A	N	I	A	L	V	L	Y	K	D	G	E	R	R	Y	I	L	A	P	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			T	T	T	S	S	S	S	S			T	T	T	S				S												S															S	S		S	S								T	T	S									S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	G	L	K	A	G	D	Q	I	Q	S	G	V	D	A	A	I	K	P	G	N	T	L	P	M	R	N	I	P	V	G	S	T	V	H	N	V	E	M	K	P	G	K	G	G	Q	L	A	R	S	A	G	T	Y	V	Q	I	V	A	R	D	G	A	Y	V	T	L	R	L	R	S
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S			S	S						S	T	T				S	T	T					G	G	G	S		S	S				B				S	S	S	S	S			S	S			S	S	S						S				S	S		B				T	T	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	G	E	M	R	K	V	E	A	D	C	R	A	T	L	G	E	V	G	N	A	E	H	M	L	R	V	L	G	K	A	G	A	A	R	W	R	G	V	R	P	T	V	R	G	T	A	M	N	P	V	D	H	P	H	G	G	G	E	G	R	N	F	G	K	H	P	V	T	P	W
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T					B		S	S				B		S			S					T	T	S				S							G	G	G	S					S	T	T	S		T	T	T		S	S			T	T	T	T									T	T
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.
Sequence	G	V	Q	T	K	G	K	K	T	R	S	N	K	R	T	D	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			T	T	T			S			S		S