PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: d2vdfa1

Fold library id	Fold	Superfamily	Family
d2vdfa1	Transmembrane beta-barrels	OMPT-like	Outer membrane adhesin/invasin OpcA

Links to external resources
Added to library: Tue Mar 16 12:34:24 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence A N E F T V H T D L S S I S S T R A F L K E K H K A A K H I G V R A D I P F D A N Q G I R L E A G F G R S K K N I I N L E T D E N K L G K T

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T S S S S
T S S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence K N V K L P T G V P E N R I D L Y T G Y T Y T Q T L S D S L N F R V G A G L G F E S S K D S I L H S S R Q S W L A K V H A D L L S Q L G N G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S T T
T T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence W Y I N P W S E V K F D L N S R Y K L N T D I N Q K T N G W G F G L G A N I G K K L G A S I E A G P F Y K Q R T Y K E S G E F S V S L T I P

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
B
B

. . . . . . . . . 220 . . . . .

Sequence K T S I R E Y G L R V G I K F

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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Phyre2 is part of Genome3D

	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	A	N	E	F	T	V	H	T	D	L	S	S	I	S	S	T	R	A	F	L	K	E	K	H	K	A	A	K	H	I	G	V	R	A	D	I	P	F	D	A	N	Q	G	I	R	L	E	A	G	F	G	R	S	K	K	N	I	I	N	L	E	T	D	E	N	K	L	G	K	T
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																		T	T																			S	S	S	S																										T	S	S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	K	N	V	K	L	P	T	G	V	P	E	N	R	I	D	L	Y	T	G	Y	T	Y	T	Q	T	L	S	D	S	L	N	F	R	V	G	A	G	L	G	F	E	S	S	K	D	S	I	L	H	S	S	R	Q	S	W	L	A	K	V	H	A	D	L	L	S	Q	L	G	N	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)								S																				T	T																																								T	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	W	Y	I	N	P	W	S	E	V	K	F	D	L	N	S	R	Y	K	L	N	T	D	I	N	Q	K	T	N	G	W	G	F	G	L	G	A	N	I	G	K	K	L	G	A	S	I	E	A	G	P	F	Y	K	Q	R	T	Y	K	E	S	G	E	F	S	V	S	L	T	I	P
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																																																															B				B
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.
Sequence	K	T	S	I	R	E	Y	G	L	R	V	G	I	K	F
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)