Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	K	R	N	A	K	T	I	I	A	G	M	I	A	L	A	I	S	H	T	A	M	A	D	D	I	K	V	A	V	V	G	A	M	S	G	P	I	A	Q	W	G	D	M	E	F	N	G	A	R	Q	A	I	K	D	I	N	A	K	G
Secondary structure
SS confidence
Disorder		?	?	?														?	?	?			?											?							?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		G	I	K	G	D	K	L	V	G	V	E	Y	D	D	A	C	D	P	K	Q	A	V	A	V	A	N	K	I	V	N	D	G	I	K	Y	V	I	G	H	L	C	S	S	S	T	Q	P	A	S	D	I	Y	E	D	E	G	I	L	M	I
Secondary structure
SS confidence
Disorder		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		S	P	G	A	T	N	P	E	L	T	Q	R	G	Y	Q	H	I	M	R	T	A	G	L	D	S	S	Q	G	P	T	A	A	K	Y	I	L	E	T	V	K	P	Q	R	I	A	I	I	H	D	K	Q	Q	Y	G	E	G	L	A	R	S
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		V	Q	D	G	L	K	A	A	N	A	N	V	V	F	F	D	G	I	T	A	G	E	K	D	F	S	A	L	I	A	R	L	K	K	E	N	I	D	F	V	Y	Y	G	G	Y	Y	P	E	M	G	Q	M	L	R	Q	A	R	S	V	G
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		L	K	T	Q	F	M	G	P	E	G	V	G	N	A	S	L	S	N	I	A	G	D	A	A	E	G	M	L	V	T	M	P	K	R	Y	D	Q	D	P	A	N	Q	G	I	V	D	A	L	K	A	D	K	K	D	P	S	G	P	Y	V
Secondary structure
SS confidence
Disorder																																				?		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
Sequence		W	I	T	Y	A	A	V	Q	S	L	A	T	A	L	E	R	T	G	S	D	E	P	L	A	L	V	K	D	L	K	A	N	G	A	N	T	V	I	G	P	L	N	W	D	E	K	G	D	L	K	G	F	D	F	G	V	F	Q	W	H
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.
Sequence		A	D	G	S	S	T	A	A	K
Secondary structure
SS confidence
Disorder							?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1usg chain A Region: 24 - 368 Aligned: 345 Modelled: 345 Confidence: 100.0% Identity: 100% Fold: Periplasmic binding protein-like I Superfamily: Periplasmic binding protein-like I Family: L-arabinose binding protein-like Phyre2 PDB 2liv chain A Region: 24 - 369 Aligned: 344 Modelled: 346 Confidence: 100.0% Identity: 79% Fold: Periplasmic binding protein-like I Superfamily: Periplasmic binding protein-like I Family: L-arabinose binding protein-like Phyre2 PDB 3ip5 chain A Region: 25 - 366 Aligned: 341 Modelled: 342 Confidence: 100.0% Identity: 41% PDB header:transport protein Chain: A: PDB Molecule:abc transporter, substrate binding protein (amino acid); PDBTitle: structure of atu2422-gaba receptor in complex with alanine Phyre2 PDB 3i09 chain A Region: 23 - 364 Aligned: 338 Modelled: 339 Confidence: 100.0% Identity: 15% PDB header:transport protein Chain: A: PDB Molecule:periplasmic branched-chain amino acid-binding protein; PDBTitle: crystal structure of a periplasmic binding protein (bma2936) from2 burkholderia mallei at 1.80 a resolution Phyre2 PDB 3hut chain A Region: 25 - 366 Aligned: 339 Modelled: 341 Confidence: 100.0% Identity: 21% PDB header:transport protein Chain: A: PDB Molecule:putative branched-chain amino acid abc PDBTitle: crystal structure of a putative branched-chain amino acid2 abc transporter from rhodospirillum rubrum Phyre2 PDB 3h5l chain B Region: 19 - 363 Aligned: 345 Modelled: 345 Confidence: 100.0% Identity: 19% PDB header:transport protein Chain: B: PDB Molecule:putative branched-chain amino acid abc PDBTitle: crystal structure of a putative branched-chain amino acid2 abc transporter from silicibacter pomeroyi Phyre2 PDB 1qo0 chain A Region: 27 - 367 Aligned: 337 Modelled: 341 Confidence: 100.0% Identity: 16% Fold: Periplasmic binding protein-like I Superfamily: Periplasmic binding protein-like I Family: L-arabinose binding protein-like Phyre2 PDB 3n0w chain A Region: 25 - 363 Aligned: 335 Modelled: 339 Confidence: 100.0% Identity: 16% PDB header:transport protein Chain: A: PDB Molecule:abc branched chain amino acid family transporter, PDBTitle: crystal structure of a branched chain amino acid abc transporter2 periplasmic ligand-binding protein (bxe_c0949) from burkholderia3 xenovorans lb400 at 1.88 a resolution Phyre2 PDB 3lkb chain B Region: 22 - 367 Aligned: 345 Modelled: 346 Confidence: 100.0% Identity: 16% PDB header:transport protein Chain: B: PDB Molecule:probable branched-chain amino acid abc PDBTitle: crystal structure of a branched chain amino acid abc2 transporter from thermus thermophilus with bound valine Phyre2 PDB 3i45 chain A Region: 22 - 367 Aligned: 344 Modelled: 346 Confidence: 100.0% Identity: 23% PDB header:signaling protein Chain: A: PDB Molecule:twin-arginine translocation pathway signal protein; PDBTitle: crystal structure of putative twin-arginine translocation pathway2 signal protein from rhodospirillum rubrum atcc 11170 Phyre2 PDB 3t0n chain A Region: 22 - 369 Aligned: 344 Modelled: 347 Confidence: 100.0% Identity: 20% PDB header:signaling protein Chain: A: PDB Molecule:twin-arginine translocation pathway signal; PDBTitle: crystal structure of twin-arginine translocation pathway signal from2 rhodopseudomonas palustris bisb5 Phyre2 PDB 3n0x chain A Region: 25 - 364 Aligned: 338 Modelled: 340 Confidence: 100.0% Identity: 18% PDB header:transport protein Chain: A: PDB Molecule:possible substrate binding protein of abc transporter PDBTitle: crystal structure of an abc-type branched-chain amino acid transporter2 (rpa4397) from rhodopseudomonas palustris cga009 at 1.50 a resolution Phyre2 PDB 3lop chain A Region: 25 - 366 Aligned: 339 Modelled: 342 Confidence: 100.0% Identity: 17% PDB header:substrate binding protein Chain: A: PDB Molecule:substrate binding periplasmic protein; PDBTitle: crystal structure of substrate-binding periplasmic protein2 (pbp) from ralstonia solanacearum Phyre2 PDB 3td9 chain A Region: 26 - 366 Aligned: 335 Modelled: 341 Confidence: 100.0% Identity: 24% PDB header:transport protein Chain: A: PDB Molecule:branched chain amino acid abc transporter, periplasmic PDBTitle: crystal structure of a leucine binding protein livk (tm1135) from2 thermotoga maritima msb8 at 1.90 a resolution Phyre2 PDB 3eaf chain A Region: 25 - 366 Aligned: 339 Modelled: 342 Confidence: 100.0% Identity: 17% PDB header:transport protein Chain: A: PDB Molecule:abc transporter, substrate binding protein; PDBTitle: crystal structure of abc transporter, substrate binding protein2 aeropyrum pernix Phyre2 PDB 3snr chain A Region: 23 - 369 Aligned: 337 Modelled: 341 Confidence: 100.0% Identity: 16% PDB header:transport protein Chain: A: PDB Molecule:extracellular ligand-binding receptor; PDBTitle: rpd_1889 protein, an extracellular ligand-binding receptor from2 rhodopseudomonas palustris. Phyre2 PDB 3sg0 chain A Region: 23 - 367 Aligned: 336 Modelled: 339 Confidence: 100.0% Identity: 17% PDB header:signaling protein Chain: A: PDB Molecule:extracellular ligand-binding receptor; PDBTitle: the crystal structure of an extracellular ligand-binding receptor from2 rhodopseudomonas palustris haa2 Phyre2 PDB 1jdp chain A Region: 20 - 367 Aligned: 345 Modelled: 348 Confidence: 100.0% Identity: 13% PDB header:signaling protein Chain: A: PDB Molecule:atrial natriuretic peptide clearance receptor; PDBTitle: crystal structure of hormone/receptor complex Phyre2 PDB 1jdp chain A Region: 20 - 367 Aligned: 345 Modelled: 348 Confidence: 100.0% Identity: 13% Fold: Periplasmic binding protein-like I Superfamily: Periplasmic binding protein-like I Family: L-arabinose binding protein-like Phyre2 PDB 1yk1 chain B Region: 20 - 368 Aligned: 345 Modelled: 349 Confidence: 100.0% Identity: 14% PDB header:hormone/growth factor receptor Chain: B: PDB Molecule:atrial natriuretic peptide clearance receptor; PDBTitle: structure of natriuretic peptide receptor-c complexed with brain2 natriuretic peptide Phyre2 1 d1usga_ 2 d2liva_ 3 c3ip5A_ 4 c3i09A_ 5 c3hutA_ 6 c3h5lB_ 7 d1qo0a_ 8 c3n0wA_ 9 c3lkbB_ 10 c3i45A_ 11 c3t0nA_ 12 c3n0xA_ 13 c3lopA_ 14 c3td9A_ 15 c3eafA_ 16 c3snrA_ 17 c3sg0A_ 18 c1jdpA_ 19 d1jdpa_ 20 c1yk1B_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1usga_ 100.0 100 Fold:Periplasmic binding protein-like I Superfamily:Periplasmic binding protein-like I Family:L-arabinose binding protein-like 2 d2liva_ 100.0 79 Fold:Periplasmic binding protein-like I Superfamily:Periplasmic binding protein-like I Family:L-arabinose binding protein-like 3 c3ip5A_ 100.0 41 PDB header:transport protein Chain: A: PDB Molecule:abc transporter, substrate binding protein (amino acid); PDBTitle: structure of atu2422-gaba receptor in complex with alanine 4 c3i09A_ 100.0 15 PDB header:transport protein Chain: A: PDB Molecule:periplasmic branched-chain amino acid-binding protein; PDBTitle: crystal structure of a periplasmic binding protein (bma2936) from2 burkholderia mallei at 1.80 a resolution 5 c3hutA_ 100.0 21 PDB header:transport protein Chain: A: PDB Molecule:putative branched-chain amino acid abc PDBTitle: crystal structure of a putative branched-chain amino acid2 abc transporter from rhodospirillum rubrum 6 c3h5lB_ 100.0 19 PDB header:transport protein Chain: B: PDB Molecule:putative branched-chain amino acid abc PDBTitle: crystal structure of a putative branched-chain amino acid2 abc transporter from silicibacter pomeroyi 7 d1qo0a_ 100.0 16 Fold:Periplasmic binding protein-like I Superfamily:Periplasmic binding protein-like I Family:L-arabinose binding protein-like 8 c3n0wA_ 100.0 16 PDB header:transport protein Chain: A: PDB Molecule:abc branched chain amino acid family transporter, PDBTitle: crystal structure of a branched chain amino acid abc transporter2 periplasmic ligand-binding protein (bxe_c0949) from burkholderia3 xenovorans lb400 at 1.88 a resolution 9 c3lkbB_ 100.0 16 PDB header:transport protein Chain: B: PDB Molecule:probable branched-chain amino acid abc PDBTitle: crystal structure of a branched chain amino acid abc2 transporter from thermus thermophilus with bound valine 10 c3i45A_ 100.0 23 PDB header:signaling protein Chain: A: PDB Molecule:twin-arginine translocation pathway signal protein; PDBTitle: crystal structure of putative twin-arginine translocation pathway2 signal protein from rhodospirillum rubrum atcc 11170 11 c3t0nA_ 100.0 20 PDB header:signaling protein Chain: A: PDB Molecule:twin-arginine translocation pathway signal; PDBTitle: crystal structure of twin-arginine translocation pathway signal from2 rhodopseudomonas palustris bisb5 12 c3n0xA_ 100.0 18 PDB header:transport protein Chain: A: PDB Molecule:possible substrate binding protein of abc transporter PDBTitle: crystal structure of an abc-type branched-chain amino acid transporter2 (rpa4397) from rhodopseudomonas palustris cga009 at 1.50 a resolution 13 c3lopA_ 100.0 17 PDB header:substrate binding protein Chain: A: PDB Molecule:substrate binding periplasmic protein; PDBTitle: crystal structure of substrate-binding periplasmic protein2 (pbp) from ralstonia solanacearum 14 c3td9A_ 100.0 24 PDB header:transport protein Chain: A: PDB Molecule:branched chain amino acid abc transporter, periplasmic PDBTitle: crystal structure of a leucine binding protein livk (tm1135) from2 thermotoga maritima msb8 at 1.90 a resolution 15 c3eafA_ 100.0 17 PDB header:transport protein Chain: A: PDB Molecule:abc transporter, substrate binding protein; PDBTitle: crystal structure of abc transporter, substrate binding protein2 aeropyrum pernix 16 c3snrA_ 100.0 16 PDB header:transport protein Chain: A: PDB Molecule:extracellular ligand-binding receptor; PDBTitle: rpd_1889 protein, an extracellular ligand-binding receptor from2 rhodopseudomonas palustris. 17 c3sg0A_ 100.0 17 PDB header:signaling protein Chain: A: PDB Molecule:extracellular ligand-binding receptor; PDBTitle: the crystal structure of an extracellular ligand-binding receptor from2 rhodopseudomonas palustris haa2 18 c1jdpA_ 100.0 13 PDB header:signaling protein Chain: A: PDB Molecule:atrial natriuretic peptide clearance receptor; PDBTitle: crystal structure of hormone/receptor complex 19 d1jdpa_ 100.0 13 Fold:Periplasmic binding protein-like I Superfamily:Periplasmic binding protein-like I Family:L-arabinose binding protein-like 20 c1yk1B_ 100.0 14 PDB header:hormone/growth factor receptor Chain: B: PDB Molecule:atrial natriuretic peptide clearance receptor; PDBTitle: structure of natriuretic peptide receptor-c complexed with brain2 natriuretic peptide 21 d1ewka_ not modelled 100.0 18 Fold:Periplasmic binding protein-like I Superfamily:Periplasmic binding protein-like I Family:L-arabinose binding protein-like 22 c3sm9A_ not modelled 100.0 19 PDB header:signaling protein Chain: A: PDB Molecule:metabotropic glutamate receptor 3; PDBTitle: crystal structure of metabotropic glutamate receptor 3 precursor in2 presence of ly341495 antagonist 23 c3om1A_ not modelled 100.0 13 PDB header:membrane protein Chain: A: PDB Molecule:glutamate receptor gluk5 (ka2); PDBTitle: crystal structure of the gluk5 (ka2) atd dimer at 1.7 angstrom2 resolution 24 c3h6hB_ not modelled 100.0 14 PDB header:membrane protein Chain: B: PDB Molecule:glutamate receptor, ionotropic kainate 2; PDBTitle: crystal structure of the glur6 amino terminal domain dimer assembly2 mpd form 25 d1dp4a_ not modelled 100.0 16 Fold:Periplasmic binding protein-like I Superfamily:Periplasmic binding protein-like I Family:L-arabinose binding protein-like 26 c2e4zA_ not modelled 100.0 18 PDB header:signaling protein Chain: A: PDB Molecule:metabotropic glutamate receptor 7; PDBTitle: crystal structure of the ligand-binding region of the group iii2 metabotropic glutamate receptor 27 c3sajB_ not modelled 100.0 15 PDB header:transport protein Chain: B: PDB Molecule:glutamate receptor 1; PDBTitle: crystal structure of glutamate receptor glua1 amino terminal domain 28 c2e4wA_ not modelled 100.0 19 PDB header:signaling protein Chain: A: PDB Molecule:metabotropic glutamate receptor 3; PDBTitle: crystal structure of the extracellular region of the group ii2 metabotropic glutamate receptor complexed with 1s,3s-acpd 29 c3p3wC_ not modelled 100.0 12 PDB header:transport protein Chain: C: PDB Molecule:glutamate receptor 3; PDBTitle: structure of a dimeric glua3 n-terminal domain (ntd) at 4.2 a2 resolution 30 c3kg2A_ not modelled 100.0 12 PDB header:membrane protein, transport protein Chain: A: PDB Molecule:glutamate receptor 2; PDBTitle: ampa subtype ionotropic glutamate receptor in complex with competitive2 antagonist zk 200775 31 c2wjxA_ not modelled 100.0 12 PDB header:transport protein Chain: A: PDB Molecule:glutamate receptor 2; PDBTitle: crystal structure of the human ionotropic glutamate2 receptor glur2 atd region at 4.1 a resolution 32 d3ckma1 not modelled 100.0 12 Fold:Periplasmic binding protein-like I Superfamily:Periplasmic binding protein-like I Family:L-arabinose binding protein-like 33 c3q41B_ not modelled 100.0 14 PDB header:transport protein Chain: B: PDB Molecule:glutamate [nmda] receptor subunit zeta-1; PDBTitle: crystal structure of the glun1 n-terminal domain (ntd) 34 c3jpyA_ not modelled 100.0 13 PDB header:transport protein Chain: A: PDB Molecule:glutamate [nmda] receptor subunit epsilon-2; PDBTitle: crystal structure of the zinc-bound amino terminal domain of the nmda2 receptor subunit nr2b 35 c3o1hB_ not modelled 99.2 10 PDB header:signaling protein Chain: B: PDB Molecule:periplasmic protein tort; PDBTitle: crystal structure of the tors sensor domain - tort complex in the2 presence of tmao 36 c2rjoA_ not modelled 99.1 10 PDB header:signaling protein Chain: A: PDB Molecule:twin-arginine translocation pathway signal protein; PDBTitle: crystal structure of twin-arginine translocation pathway signal2 protein from burkholderia phytofirmans 37 d8abpa_ not modelled 98.9 11 Fold:Periplasmic binding protein-like I Superfamily:Periplasmic binding protein-like I Family:L-arabinose binding protein-like 38 c3brsA_ not modelled 98.9 12 PDB header:transport protein Chain: A: PDB Molecule:periplasmic binding protein/laci transcriptional regulator; PDBTitle: crystal structure of sugar transporter from clostridium2 phytofermentans 39 d1jx6a_ not modelled 98.8 12 Fold:Periplasmic binding protein-like I Superfamily:Periplasmic binding protein-like I Family:L-arabinose binding protein-like 40 c3ma0A_ not modelled 98.8 11 PDB header:sugar binding protein Chain: A: PDB Molecule:d-xylose-binding periplasmic protein; PDBTitle: closed liganded crystal structure of xylose binding protein from2 escherichia coli 41 d1tjya_ not modelled 98.8 11 Fold:Periplasmic binding protein-like I Superfamily:Periplasmic binding protein-like I Family:L-arabinose binding protein-like 42 d1gcaa_ not modelled 98.7 8 Fold:Periplasmic binding protein-like I Superfamily:Periplasmic binding protein-like I Family:L-arabinose binding protein-like 43 c3h5oB_ not modelled 98.7 11 PDB header:transcription regulator Chain: B: PDB Molecule:transcriptional regulator gntr; PDBTitle: the crystal structure of transcription regulator gntr from2 chromobacterium violaceum 44 d1guda_ not modelled 98.7 12 Fold:Periplasmic binding protein-like I Superfamily:Periplasmic binding protein-like I Family:L-arabinose binding protein-like 45 c3ksmA_ not modelled 98.7 16 PDB header:transport protein Chain: A: PDB Molecule:abc-type sugar transport system, periplasmic component; PDBTitle: crystal structure of abc-type sugar transport system, periplasmic2 component from hahella chejuensis 46 d2fvya1 not modelled 98.7 11 Fold:Periplasmic binding protein-like I Superfamily:Periplasmic binding protein-like I Family:L-arabinose binding protein-like 47 c2vk2A_ not modelled 98.7 12 PDB header:transport protein Chain: A: PDB Molecule:abc transporter periplasmic-binding protein ytfq; PDBTitle: crystal structure of a galactofuranose binding protein 48 c2qvcC_ not modelled 98.6 9 PDB header:transport protein Chain: C: PDB Molecule:sugar abc transporter, periplasmic sugar-binding PDBTitle: crystal structure of a periplasmic sugar abc transporter2 from thermotoga maritima 49 c3s99A_ not modelled 98.6 10 PDB header:lipid binding protein Chain: A: PDB Molecule:basic membrane lipoprotein; PDBTitle: crystal structure of a basic membrane lipoprotein from brucella2 melitensis, iodide soak 50 c3h75A_ not modelled 98.6 14 PDB header:sugar binding protein Chain: A: PDB Molecule:periplasmic sugar-binding domain protein; PDBTitle: crystal structure of a periplasmic sugar-binding protein from the2 pseudomonas fluorescens 51 c2iksA_ not modelled 98.6 8 PDB header:transcription Chain: A: PDB Molecule:dna-binding transcriptional dual regulator; PDBTitle: crystal structure of n-terminal truncated dna-binding transcriptional2 dual regulator from escherichia coli k12 52 c3brqA_ not modelled 98.5 6 PDB header:transcription regulator Chain: A: PDB Molecule:hth-type transcriptional regulator ascg; PDBTitle: crystal structure of the escherichia coli transcriptional repressor2 ascg 53 c2hqbA_ not modelled 98.5 14 PDB header:transcription Chain: A: PDB Molecule:transcriptional activator of comk gene; PDBTitle: crystal structure of a transcriptional activator of comk2 gene from bacillus halodurans 54 c2fqxA_ not modelled 98.4 13 PDB header:transport protein Chain: A: PDB Molecule:membrane lipoprotein tmpc; PDBTitle: pnra from treponema pallidum complexed with guanosine 55 c3dbiA_ not modelled 98.4 8 PDB header:transcription regulator Chain: A: PDB Molecule:sugar-binding transcriptional regulator, laci family; PDBTitle: crystal structure of sugar-binding transcriptional regulator (laci2 family) from escherichia coli complexed with phosphate 56 c3d8uA_ not modelled 98.4 10 PDB header:transcription regulator Chain: A: PDB Molecule:purr transcriptional regulator; PDBTitle: the crystal structure of a purr family transcriptional regulator from2 vibrio parahaemolyticus rimd 2210633 57 c3lftA_ not modelled 98.4 11 PDB header:structure genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: the crystal structure of the abc domain in complex with l-trp from2 streptococcus pneumonia to 1.35a 58 d1jyea_ not modelled 98.4 7 Fold:Periplasmic binding protein-like I Superfamily:Periplasmic binding protein-like I Family:L-arabinose binding protein-like 59 c1jyeA_ not modelled 98.4 7 PDB header:transcription Chain: A: PDB Molecule:lactose operon repressor; PDBTitle: structure of a dimeric lac repressor with c-terminal deletion and k84l2 substitution 60 d2dria_ not modelled 98.4 16 Fold:Periplasmic binding protein-like I Superfamily:Periplasmic binding protein-like I Family:L-arabinose binding protein-like 61 c3e3mA_ not modelled 98.4 10 PDB header:transcription Chain: A: PDB Molecule:transcriptional regulator, laci family; PDBTitle: crystal structure of a laci family transcriptional2 regulator from silicibacter pomeroyi 62 c3k4hA_ not modelled 98.2 10 PDB header:transcription regulator Chain: A: PDB Molecule:putative transcriptional regulator; PDBTitle: crystal structure of putative transcriptional regulator laci from2 bacillus cereus subsp. cytotoxis nvh 391-98 63 c3rotA_ not modelled 98.2 9 PDB header:transport protein Chain: A: PDB Molecule:abc sugar transporter, periplasmic sugar binding protein; PDBTitle: crystal structure of abc sugar transporter (periplasmic sugar binding2 protein) from legionella pneumophila 64 c3d02A_ not modelled 98.2 10 PDB header:sugar binding protein Chain: A: PDB Molecule:putative laci-type transcriptional regulator; PDBTitle: crystal structure of periplasmic sugar-binding protein2 (yp_001338366.1) from klebsiella pneumoniae subsp. pneumoniae mgh3 78578 at 1.30 a resolution 65 c3l6uA_ not modelled 98.2 13 PDB header:transport protein Chain: A: PDB Molecule:abc-type sugar transport system periplasmic PDBTitle: crystal structure of abc-type sugar transport system,2 periplasmic component from exiguobacterium sibiricum 66 c3o74A_ not modelled 98.2 10 PDB header:transcription Chain: A: PDB Molecule:fructose transport system repressor frur; PDBTitle: crystal structure of cra transcriptional dual regulator from2 pseudomonas putida 67 c2qh8A_ not modelled 98.1 14 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of conserved domain protein from vibrio2 cholerae o1 biovar eltor str. n16961 68 c2ioyB_ not modelled 98.1 11 PDB header:sugar binding protein Chain: B: PDB Molecule:periplasmic sugar-binding protein; PDBTitle: crystal structure of thermoanaerobacter tengcongensis2 ribose binding protein 69 c2x7xA_ not modelled 98.1 8 PDB header:transferase Chain: A: PDB Molecule:sensor protein; PDBTitle: fructose binding periplasmic domain of hybrid two component2 system bt1754 70 c3k9cA_ not modelled 98.1 10 PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional regulator, laci family protein; PDBTitle: crystal structure of laci transcriptional regulator from rhodococcus2 species. 71 c3mizB_ not modelled 98.1 12 PDB header:transcription regulator Chain: B: PDB Molecule:putative transcriptional regulator protein, laci PDBTitle: crystal structure of a putative transcriptional regulator2 protein, lacl family from rhizobium etli 72 c3g1wB_ not modelled 98.0 10 PDB header:transport protein Chain: B: PDB Molecule:sugar abc transporter; PDBTitle: crystal structure of sugar abc transporter (sugar-binding protein)2 from bacillus halodurans 73 c3ctpB_ not modelled 98.0 10 PDB header:transcription regulator Chain: B: PDB Molecule:periplasmic binding protein/laci transcriptional regulator; PDBTitle: crystal structure of periplasmic binding protein/laci transcriptional2 regulator from alkaliphilus metalliredigens qymf complexed with d-3 xylulofuranose 74 c3gv0A_ not modelled 98.0 9 PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional regulator, laci family; PDBTitle: crystal structure of laci family transcription regulator from2 agrobacterium tumefaciens 75 c3c3kA_ not modelled 98.0 12 PDB header:isomerase Chain: A: PDB Molecule:alanine racemase; PDBTitle: crystal structure of an uncharacterized protein from actinobacillus2 succinogenes 76 c2fn9A_ not modelled 98.0 13 PDB header:sugar binding protein Chain: A: PDB Molecule:ribose abc transporter, periplasmic ribose-binding protein; PDBTitle: thermotoga maritima ribose binding protein unliganded form 77 c3jy6B_ not modelled 97.9 12 PDB header:transcription regulator Chain: B: PDB Molecule:transcriptional regulator, laci family; PDBTitle: crystal structure of laci transcriptional regulator from lactobacillus2 brevis 78 c2qu7B_ not modelled 97.9 9 PDB header:transcription Chain: B: PDB Molecule:putative transcriptional regulator; PDBTitle: crystal structure of a putative transcription regulator2 from staphylococcus saprophyticus subsp. saprophyticus 79 c3bblA_ not modelled 97.9 10 PDB header:regulatory protein Chain: A: PDB Molecule:regulatory protein of laci family; PDBTitle: crystal structure of a regulatory protein of laci family from2 chloroflexus aggregans 80 c2rgyA_ not modelled 97.8 9 PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional regulator, laci family; PDBTitle: crystal structure of transcriptional regulator of laci family from2 burkhoderia phymatum 81 c3qk7C_ not modelled 97.8 8 PDB header:transcription regulator Chain: C: PDB Molecule:transcriptional regulators; PDBTitle: crystal structure of putative transcriptional regulator from yersinia2 pestis biovar microtus str. 91001 82 d1dbqa_ not modelled 97.8 8 Fold:Periplasmic binding protein-like I Superfamily:Periplasmic binding protein-like I Family:L-arabinose binding protein-like 83 d1tlfa_ not modelled 97.8 7 Fold:Periplasmic binding protein-like I Superfamily:Periplasmic binding protein-like I Family:L-arabinose binding protein-like 84 c3hcwB_ not modelled 97.8 10 PDB header:rna binding protein Chain: B: PDB Molecule:maltose operon transcriptional repressor; PDBTitle: crystal structure of probable maltose operon transcriptional repressor2 malr from staphylococcus areus 85 c3gbvB_ not modelled 97.8 12 PDB header:transcription regulator Chain: B: PDB Molecule:putative laci-family transcriptional regulator; PDBTitle: crystal structure of a putative laci transcriptional regulator from2 bacteroides fragilis 86 c3egcF_ not modelled 97.8 10 PDB header:structural genomics, unknown function Chain: F: PDB Molecule:putative ribose operon repressor; PDBTitle: crystal structure of a putative ribose operon repressor from2 burkholderia thailandensis 87 d2nzug1 not modelled 97.7 9 Fold:Periplasmic binding protein-like I Superfamily:Periplasmic binding protein-like I Family:L-arabinose binding protein-like 88 c3l49D_ not modelled 97.7 9 PDB header:transport protein Chain: D: PDB Molecule:abc sugar (ribose) transporter, periplasmic PDBTitle: crystal structure of abc sugar transporter subunit from2 rhodobacter sphaeroides 2.4.1 89 c3bilA_ not modelled 97.5 9 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:probable laci-family transcriptional regulator; PDBTitle: crystal structure of a probable laci family transcriptional2 regulator from corynebacterium glutamicum 90 c2o20H_ not modelled 97.5 11 PDB header:transcription Chain: H: PDB Molecule:catabolite control protein a; PDBTitle: crystal structure of transcription regulator ccpa of lactococcus2 lactis 91 c3hs3A_ not modelled 97.4 11 PDB header:transcription regulator Chain: A: PDB Molecule:ribose operon repressor; PDBTitle: crystal structure of periplasmic binding ribose operon2 repressor protein from lactobacillus acidophilus 92 c3g85A_ not modelled 97.4 8 PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional regulator (laci family); PDBTitle: crystal structure of laci family transcription regulator from2 clostridium acetobutylicum 93 c3kkeA_ not modelled 97.3 13 PDB header:transcription regulator Chain: A: PDB Molecule:laci family transcriptional regulator; PDBTitle: crystal structure of a laci family transcriptional regulator2 from mycobacterium smegmatis 94 d1byka_ not modelled 97.0 8 Fold:Periplasmic binding protein-like I Superfamily:Periplasmic binding protein-like I Family:L-arabinose binding protein-like 95 c3cs3A_ not modelled 97.0 6 PDB header:transcription regulator Chain: A: PDB Molecule:sugar-binding transcriptional regulator, laci family; PDBTitle: crystal structure of sugar-binding transcriptional regulator (laci2 family) from enterococcus faecalis 96 c3jvdA_ not modelled 96.8 16 PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional regulators; PDBTitle: crystal structure of putative transcription regulation repressor (laci2 family) from corynebacterium glutamicum 97 c1zvvA_ not modelled 96.6 8 PDB header:transcription/dna Chain: A: PDB Molecule:glucose-resistance amylase regulator; PDBTitle: crystal structure of a ccpa-crh-dna complex 98 c3gybB_ not modelled 96.6 16 PDB header:transcription regulator Chain: B: PDB Molecule:transcriptional regulators (laci-family PDBTitle: crystal structure of a laci-family transcriptional2 regulatory protein from corynebacterium glutamicum 99 c3clkB_ not modelled 96.1 13 PDB header:transcription regulator Chain: B: PDB Molecule:transcription regulator; PDBTitle: crystal structure of a transcription regulator from lactobacillus2 plantarum 100 c3huuC_ not modelled 95.3 11 PDB header:transcription regulator Chain: C: PDB Molecule:transcription regulator like protein; PDBTitle: crystal structure of transcription regulator like protein from2 staphylococcus haemolyticus 101 c2h0aA_ not modelled 95.0 13 PDB header:transcription Chain: A: PDB Molecule:transcriptional regulator; PDBTitle: crystal structure of probable transcription regulator from2 thermus thermophilus 102 c3e61A_ not modelled 93.8 11 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative transcriptional repressor of ribose operon; PDBTitle: crystal structure of a putative transcriptional repressor of ribose2 operon from staphylococcus saprophyticus subsp. saprophyticus 103 c3qi7A_ not modelled 91.2 15 PDB header:transcription Chain: A: PDB Molecule:putative transcriptional regulator; PDBTitle: crystal structure of a putative transcriptional regulator2 (yp_001089212.1) from clostridium difficile 630 at 1.86 a resolution 104 d7reqa2 not modelled 89.3 9 Fold:Flavodoxin-like Superfamily:Cobalamin (vitamin B12)-binding domain Family:Cobalamin (vitamin B12)-binding domain 105 c3qvjB_ not modelled 85.2 13 PDB header:isomerase Chain: B: PDB Molecule:putative hydantoin racemase; PDBTitle: allantoin racemase from klebsiella pneumoniae 106 c2xecD_ not modelled 81.2 16 PDB header:isomerase Chain: D: PDB Molecule:putative maleate isomerase; PDBTitle: nocardia farcinica maleate cis-trans isomerase bound to2 tris 107 c2qv7A_ not modelled 80.4 12 PDB header:transferase Chain: A: PDB Molecule:diacylglycerol kinase dgkb; PDBTitle: crystal structure of diacylglycerol kinase dgkb in complex with adp2 and mg 108 c1bdhA_ not modelled 79.6 10 PDB header:transcription/dna Chain: A: PDB Molecule:protein (purine repressor); PDBTitle: purine repressor mutant-hypoxanthine-palindromic operator2 complex 109 d2ajta2 not modelled 79.5 10 Fold:FucI/AraA N-terminal and middle domains Superfamily:FucI/AraA N-terminal and middle domains Family:AraA N-terminal and middle domain-like 110 c2dgdD_ not modelled 77.4 12 PDB header:lyase Chain: D: PDB Molecule:223aa long hypothetical arylmalonate decarboxylase; PDBTitle: crystal structure of st0656, a function unknown protein from2 sulfolobus tokodaii 111 d1fmfa_ not modelled 75.0 11 Fold:Flavodoxin-like Superfamily:Cobalamin (vitamin B12)-binding domain Family:Cobalamin (vitamin B12)-binding domain 112 c3jzdA_ not modelled 71.3 16 PDB header:oxidoreductase Chain: A: PDB Molecule:iron-containing alcohol dehydrogenase; PDBTitle: crystal structure of putative alcohol dehedrogenase (yp_298327.1) from2 ralstonia eutropha jmp134 at 2.10 a resolution 113 c1e1cA_ not modelled 70.3 9 PDB header:isomerase Chain: A: PDB Molecule:methylmalonyl-coa mutase alpha chain; PDBTitle: methylmalonyl-coa mutase h244a mutant 114 c3bfjK_ not modelled 69.4 17 PDB header:oxidoreductase Chain: K: PDB Molecule:1,3-propanediol oxidoreductase; PDBTitle: crystal structure analysis of 1,3-propanediol oxidoreductase 115 d2qv7a1 not modelled 69.0 12 Fold:NAD kinase/diacylglycerol kinase-like Superfamily:NAD kinase/diacylglycerol kinase-like Family:Diacylglycerol kinase-like 116 d2p1ra1 not modelled 68.5 11 Fold:NAD kinase/diacylglycerol kinase-like Superfamily:NAD kinase/diacylglycerol kinase-like Family:Diacylglycerol kinase-like 117 c3ojcD_ not modelled 66.3 14 PDB header:isomerase Chain: D: PDB Molecule:putative aspartate/glutamate racemase; PDBTitle: crystal structure of a putative asp/glu racemase from yersinia pestis 118 d1fuia2 not modelled 66.2 15 Fold:FucI/AraA N-terminal and middle domains Superfamily:FucI/AraA N-terminal and middle domains Family:L-fucose isomerase, N-terminal and second domains 119 c2yxbA_ not modelled 63.8 11 PDB header:isomerase Chain: A: PDB Molecule:coenzyme b12-dependent mutase; PDBTitle: crystal structure of the methylmalonyl-coa mutase alpha-subunit from2 aeropyrum pernix 120 d1mvoa_ not modelled 60.9 14 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0