Email l.a.kelley@imperial.ac.uk Description P25772 Date Thu Jan 5 11:42:38 GMT 2012 Unique Job ID 7a27e3b50d8888f8

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c2owoA_ 100.0 23 PDB header:ligase/dna Chain: A: PDB Molecule:dna ligase; PDBTitle: last stop on the road to repair: structure of e.coli dna ligase bound2 to nicked dna-adenylate 2 c1v9pB_ 100.0 23 PDB header:ligase Chain: B: PDB Molecule:dna ligase; PDBTitle: crystal structure of nad+-dependent dna ligase 3 c1dgsB_ 100.0 22 PDB header:ligase Chain: B: PDB Molecule:dna ligase; PDBTitle: crystal structure of nad+-dependent dna ligase from t.2 filiformis 4 c3pn1A_ 100.0 25 PDB header:ligase/ligase inhibitor Chain: A: PDB Molecule:dna ligase; PDBTitle: novel bacterial nad+-dependent dna ligase inhibitors with broad2 spectrum potency and antibacterial efficacy in vivo 5 d1b04a_ 100.0 25 Fold:ATP-grasp Superfamily:DNA ligase/mRNA capping enzyme, catalytic domain Family:Adenylation domain of NAD+-dependent DNA ligase 6 d1ta8a_ 100.0 24 Fold:ATP-grasp Superfamily:DNA ligase/mRNA capping enzyme, catalytic domain Family:Adenylation domain of NAD+-dependent DNA ligase 7 c3jslA_ 100.0 26 PDB header:ligase Chain: A: PDB Molecule:dna ligase; PDBTitle: crystal structure of the adenylation domain of nad+-2 dependent dna ligase from staphylococcus aureus 8 d1v9pa3 100.0 25 Fold:ATP-grasp Superfamily:DNA ligase/mRNA capping enzyme, catalytic domain Family:Adenylation domain of NAD+-dependent DNA ligase 9 c1zauA_ 100.0 23 PDB header:ligase Chain: A: PDB Molecule:dna ligase; PDBTitle: adenylation domain of nad+ dependent dna ligase from2 m.tuberculosis 10 d1dgsa3 100.0 24 Fold:ATP-grasp Superfamily:DNA ligase/mRNA capping enzyme, catalytic domain Family:Adenylation domain of NAD+-dependent DNA ligase 11 c3bacA_ 100.0 24 PDB header:ligase Chain: A: PDB Molecule:dna ligase; PDBTitle: structural basis for the inhibition of bacterial nad+2 dependent dna ligase 12 d1dgsa1 100.0 15 Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:NAD+-dependent DNA ligase, domain 3 13 d1dgsa2 100.0 28 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:DNA ligase/mRNA capping enzyme postcatalytic domain 14 d1x9na3 99.6 15 Fold:ATP-grasp Superfamily:DNA ligase/mRNA capping enzyme, catalytic domain Family:ATP-dependent DNA ligase catalytic domain 15 d2a1jb1 99.0 14 Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:Hef domain-like 16 c2hivA_ 98.9 18 PDB header:ligase Chain: A: PDB Molecule:thermostable dna ligase; PDBTitle: atp-dependent dna ligase from s. solfataricus 17 c3gdeA_ 98.9 20 PDB header:ligase Chain: A: PDB Molecule:dna ligase; PDBTitle: the closed conformation of atp-dependent dna ligase from2 archaeoglobus fulgidus 18 c2vugB_ 98.8 23 PDB header:ligase Chain: B: PDB Molecule:pab1020; PDBTitle: the structure of an archaeal homodimeric rna ligase 19 c3l2pA_ 98.8 13 PDB header:ligase/dna Chain: A: PDB Molecule:dna ligase 3; PDBTitle: human dna ligase iii recognizes dna ends by dynamic switching between2 two dna bound states 20 d1x2ia1 98.7 14 Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:Hef domain-like 21 c2cfmA_ not modelled 98.6 14 PDB header:ligase Chain: A: PDB Molecule:thermostable dna ligase; PDBTitle: atp-dependent dna ligase from pyrococcus furiosus 22 c1x9nA_ not modelled 98.6 16 PDB header:ligase/dna Chain: A: PDB Molecule:dna ligase i; PDBTitle: crystal structure of human dna ligase i bound to 5'-adenylated, nicked2 dna 23 d2bgwa1 not modelled 98.6 16 Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:Hef domain-like 24 c3qwuA_ not modelled 98.3 13 PDB header:ligase Chain: A: PDB Molecule:dna ligase; PDBTitle: putative atp-dependent dna ligase from aquifex aeolicus. 25 c1p8lA_ not modelled 98.3 15 PDB header:ligase Chain: A: PDB Molecule:pbcv-1 dna ligase; PDBTitle: new crystal structure of chlorella virus dna ligase-adenylate 26 c1a0iA_ not modelled 98.1 16 PDB header:ligase Chain: A: PDB Molecule:dna ligase; PDBTitle: atp-dependent dna ligase from bacteriophage t7 complex with2 atp 27 d1kfta_ not modelled 98.1 15 Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:Excinuclease UvrC C-terminal domain 28 c1kftA_ not modelled 98.1 15 PDB header:dna binding protein Chain: A: PDB Molecule:excinuclease abc subunit c; PDBTitle: solution structure of the c-terminal domain of uvrc from e-2 coli 29 d1fvia2 not modelled 98.0 14 Fold:ATP-grasp Superfamily:DNA ligase/mRNA capping enzyme, catalytic domain Family:ATP-dependent DNA ligase catalytic domain 30 c1vs0A_ not modelled 97.8 22 PDB header:ligase Chain: A: PDB Molecule:putative dna ligase-like protein rv0938/mt0965; PDBTitle: crystal structure of the ligase domain from m. tuberculosis ligd at2 2.4a 31 c2nrzB_ not modelled 97.7 16 PDB header:hydrolase Chain: B: PDB Molecule:uvrabc system protein c; PDBTitle: crystal structure of the c-terminal half of uvrc bound to2 its catalytic divalent cation 32 c3c1zA_ not modelled 97.7 15 PDB header:dna binding protein Chain: A: PDB Molecule:dna integrity scanning protein disa; PDBTitle: structure of the ligand-free form of a bacterial dna damage2 sensor protein 33 d2i1qa1 not modelled 97.6 17 Fold:SAM domain-like Superfamily:Rad51 N-terminal domain-like Family:DNA repair protein Rad51, N-terminal domain 34 d1szpa1 not modelled 97.6 19 Fold:SAM domain-like Superfamily:Rad51 N-terminal domain-like Family:DNA repair protein Rad51, N-terminal domain 35 c2bhnD_ not modelled 97.6 18 PDB header:hydrolase Chain: D: PDB Molecule:xpf endonuclease; PDBTitle: xpf from aeropyrum pernix 36 d1a0ia2 not modelled 97.6 14 Fold:ATP-grasp Superfamily:DNA ligase/mRNA capping enzyme, catalytic domain Family:ATP-dependent DNA ligase catalytic domain 37 d1pzna1 not modelled 97.5 17 Fold:SAM domain-like Superfamily:Rad51 N-terminal domain-like Family:DNA repair protein Rad51, N-terminal domain 38 c1b22A_ not modelled 97.5 20 PDB header:dna binding protein Chain: A: PDB Molecule:dna repair protein rad51; PDBTitle: rad51 (n-terminal domain) 39 d1b22a_ not modelled 97.5 20 Fold:SAM domain-like Superfamily:Rad51 N-terminal domain-like Family:DNA repair protein Rad51, N-terminal domain 40 d1ckma2 not modelled 97.3 14 Fold:ATP-grasp Superfamily:DNA ligase/mRNA capping enzyme, catalytic domain Family:mRNA capping enzyme 41 d2aq0a1 not modelled 97.3 10 Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:Hef domain-like 42 c3kyhC_ not modelled 97.1 19 PDB header:protein binding Chain: C: PDB Molecule:mrna-capping enzyme subunit alpha; PDBTitle: saccharomyces cerevisiae cet1-ceg1 capping apparatus 43 c1p16A_ not modelled 96.9 17 PDB header:transferase Chain: A: PDB Molecule:mrna capping enzyme alpha subunit; PDBTitle: structure of an mrna capping enzyme bound to the2 phosphorylated carboxyl-terminal domain of rna polymerase3 ii 44 c1cknA_ not modelled 96.9 16 PDB header:capping enzyme Chain: A: PDB Molecule:mrna capping enzyme; PDBTitle: structure of guanylylated mrna capping enzyme complexed2 with gtp 45 d1szpb1 not modelled 96.8 19 Fold:SAM domain-like Superfamily:Rad51 N-terminal domain-like Family:DNA repair protein Rad51, N-terminal domain 46 c3s24F_ not modelled 96.5 16 PDB header:hydrolase, transferase Chain: F: PDB Molecule:mrna-capping enzyme; PDBTitle: crystal structure of human mrna guanylyltransferase 47 d1p16a2 not modelled 96.5 18 Fold:ATP-grasp Superfamily:DNA ligase/mRNA capping enzyme, catalytic domain Family:mRNA capping enzyme 48 c2w9mB_ not modelled 96.5 16 PDB header:dna replication Chain: B: PDB Molecule:polymerase x; PDBTitle: structure of family x dna polymerase from deinococcus2 radiodurans 49 c2csdB_ not modelled 96.1 16 PDB header:isomerase Chain: B: PDB Molecule:topoisomerase v; PDBTitle: crystal structure of topoisomerase v (61 kda fragment) 50 d1pu6a_ not modelled 96.0 18 Fold:DNA-glycosylase Superfamily:DNA-glycosylase Family:3-Methyladenine DNA glycosylase III (MagIII) 51 d1doqa_ not modelled 95.6 20 Fold:SAM domain-like Superfamily:C-terminal domain of RNA polymerase alpha subunit Family:C-terminal domain of RNA polymerase alpha subunit 52 d1lb2b_ not modelled 95.6 14 Fold:SAM domain-like Superfamily:C-terminal domain of RNA polymerase alpha subunit Family:C-terminal domain of RNA polymerase alpha subunit 53 d1z3eb1 not modelled 95.3 6 Fold:SAM domain-like Superfamily:C-terminal domain of RNA polymerase alpha subunit Family:C-terminal domain of RNA polymerase alpha subunit 54 d1cooa_ not modelled 95.2 14 Fold:SAM domain-like Superfamily:C-terminal domain of RNA polymerase alpha subunit Family:C-terminal domain of RNA polymerase alpha subunit 55 d2p6ra2 not modelled 94.8 10 Fold:Sec63 N-terminal domain-like Superfamily:Sec63 N-terminal domain-like Family:Achaeal helicase C-terminal domain 56 c3f10A_ not modelled 94.8 14 PDB header:hydrolase, lyase Chain: A: PDB Molecule:8-oxoguanine-dna-glycosylase; PDBTitle: crystal structure of clostridium acetobutylicum 8-2 oxoguanine dna glycosylase in complex with 8-oxoguanosine 57 c2h5xA_ not modelled 94.8 13 PDB header:dna binding protein Chain: A: PDB Molecule:holliday junction atp-dependent dna helicase ruva; PDBTitle: ruva from mycobacterium tuberculosis 58 d1cuka2 not modelled 94.4 15 Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:DNA helicase RuvA subunit, middle domain 59 c2hvsA_ not modelled 94.3 15 PDB header:ligase/dna/rna Chain: A: PDB Molecule:t4 rna ligase 2; PDBTitle: structure of t4 rna ligase 2 with nicked 5'-adenylated2 nucleic acid duplex containing a 2'-deoxyribonucleotide at3 the nick 60 c1ixrA_ not modelled 94.2 13 PDB header:hydrolase Chain: A: PDB Molecule:holliday junction dna helicase ruva; PDBTitle: ruva-ruvb complex 61 c1s5lu_ not modelled 93.4 11 PDB header:photosynthesis Chain: U: PDB Molecule:photosystem ii 12 kda extrinsic protein; PDBTitle: architecture of the photosynthetic oxygen evolving center 62 d1ixra1 not modelled 93.3 13 Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:DNA helicase RuvA subunit, middle domain 63 d3bzka1 not modelled 93.2 12 Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:Tex HhH-containing domain-like 64 d1s68a_ not modelled 93.0 15 Fold:ATP-grasp Superfamily:DNA ligase/mRNA capping enzyme, catalytic domain Family:RNA ligase 65 d1keaa_ not modelled 92.9 14 Fold:DNA-glycosylase Superfamily:DNA-glycosylase Family:Mismatch glycosylase 66 c1rrqA_ not modelled 92.6 13 PDB header:hydrolase/dna Chain: A: PDB Molecule:muty; PDBTitle: muty adenine glycosylase in complex with dna containing an2 a:oxog pair 67 c1d8lA_ not modelled 92.5 17 PDB header:gene regulation Chain: A: PDB Molecule:protein (holliday junction dna helicase ruva); PDBTitle: e. coli holliday junction binding protein ruva nh2 region2 lacking domain iii 68 d2abka_ not modelled 92.4 14 Fold:DNA-glycosylase Superfamily:DNA-glycosylase Family:Endonuclease III 69 d2axtu1 not modelled 92.2 11 Fold:SAM domain-like Superfamily:PsbU/PolX domain-like Family:PsbU-like 70 c2ihmA_ not modelled 92.2 11 PDB header:transferase/dna Chain: A: PDB Molecule:dna polymerase mu; PDBTitle: polymerase mu in ternary complex with gapped 11mer dna2 duplex and bound incoming nucleotide 71 c1ko9A_ not modelled 91.6 15 PDB header:hydrolase Chain: A: PDB Molecule:8-oxoguanine dna glycosylase; PDBTitle: native structure of the human 8-oxoguanine dna glycosylase2 hogg1 72 d2noha1 not modelled 91.4 19 Fold:DNA-glycosylase Superfamily:DNA-glycosylase Family:DNA repair glycosylase, 2 C-terminal domains 73 d2edua1 not modelled 91.1 17 Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:ComEA-like 74 c1kdhA_ not modelled 90.5 9 PDB header:transferase/dna Chain: A: PDB Molecule:terminal deoxynucleotidyltransferase short PDBTitle: binary complex of murine terminal deoxynucleotidyl2 transferase with a primer single stranded dna 75 c2p6uA_ not modelled 90.2 11 PDB header:dna binding protein Chain: A: PDB Molecule:afuhel308 helicase; PDBTitle: apo structure of the hel308 superfamily 2 helicase 76 c1hjpA_ not modelled 90.2 17 PDB header:dna recombination Chain: A: PDB Molecule:ruva; PDBTitle: holliday junction binding protein ruva from e. coli 77 c2yg8B_ not modelled 90.2 22 PDB header:hydrolase Chain: B: PDB Molecule:dna-3-methyladenine glycosidase ii, putative; PDBTitle: structure of an unusual 3-methyladenine dna glycosylase ii (2 alka) from deinococcus radiodurans 78 c1nomA_ not modelled 90.1 13 PDB header:nucleotidyltransferase Chain: A: PDB Molecule:dna polymerase beta; PDBTitle: dna polymerase beta (pol b) (e.c.2.7.7.7), 31-kd domain; soaked in the2 presence of mncl2 (5 millimolar) 79 d1rrqa1 not modelled 89.8 13 Fold:DNA-glycosylase Superfamily:DNA-glycosylase Family:Mismatch glycosylase 80 d1kg2a_ not modelled 89.7 14 Fold:DNA-glycosylase Superfamily:DNA-glycosylase Family:Mismatch glycosylase 81 c3s6iA_ not modelled 89.6 13 PDB header:hydrolase/dna Chain: A: PDB Molecule:dna-3-methyladenine glycosylase 1; PDBTitle: schizosaccaromyces pombe 3-methyladenine dna glycosylase (mag1) in2 complex with abasic-dna. 82 c1wcnA_ not modelled 89.2 16 PDB header:rna-binding protein Chain: A: PDB Molecule:transcription elongation protein nusa; PDBTitle: nmr structure of the carboxyterminal domains of escherichia2 coli nusa 83 c8iczA_ not modelled 89.1 7 PDB header:transferase/dna Chain: A: PDB Molecule:protein (dna polymerase beta (e.c.2.7.7.7)); PDBTitle: dna polymerase beta (pol b) (e.c.2.7.7.7) complexed with2 seven base pairs of dna; soaked in the presence of of datp3 (1 millimolar), mncl2 (5 millimolar), and lithium sulfate4 (75 millimolar) 84 d1bvsa2 not modelled 89.0 13 Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:DNA helicase RuvA subunit, middle domain 85 d2q0zx1 not modelled 88.5 12 Fold:Sec63 N-terminal domain-like Superfamily:Sec63 N-terminal domain-like Family:Sec63 N-terminal domain 86 d1u9la_ not modelled 88.4 10 Fold:SAM domain-like Superfamily:Rad51 N-terminal domain-like Family:NusA extra C-terminal domains 87 d2duya1 not modelled 88.2 30 Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:ComEA-like 88 c2va8A_ not modelled 87.9 13 PDB header:hydrolase Chain: A: PDB Molecule:ski2-type helicase; PDBTitle: dna repair helicase hel308 89 d1orna_ not modelled 87.5 14 Fold:DNA-glycosylase Superfamily:DNA-glycosylase Family:Endonuclease III 90 d1ngna_ not modelled 86.3 13 Fold:DNA-glycosylase Superfamily:DNA-glycosylase Family:Mismatch glycosylase 91 c2bcuA_ not modelled 85.9 11 PDB header:transferase, lyase/dna Chain: A: PDB Molecule:dna polymerase lambda; PDBTitle: dna polymerase lambda in complex with a dna duplex2 containing an unpaired damp and a t:t mismatch 92 d2a1ja1 not modelled 85.3 11 Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:Hef domain-like 93 c3n5nX_ not modelled 85.0 21 PDB header:hydrolase Chain: X: PDB Molecule:a/g-specific adenine dna glycosylase; PDBTitle: crystal structure analysis of the catalytic domain and interdomain2 connector of human muty homologue 94 c1yqmA_ not modelled 84.9 19 PDB header:hydrolase/dna Chain: A: PDB Molecule:n-glycosylase/dna lyase; PDBTitle: catalytically inactive human 8-oxoguanine glycosylase2 crosslinked to 7-deazaguanine containing dna 95 c3gqcB_ not modelled 84.5 17 PDB header:transferase/dna Chain: B: PDB Molecule:dna repair protein rev1; PDBTitle: structure of human rev1-dna-dntp ternary complex 96 d1mpga1 not modelled 84.4 22 Fold:DNA-glycosylase Superfamily:DNA-glycosylase Family:DNA repair glycosylase, 2 C-terminal domains 97 c1t3nB_ not modelled 83.8 15 PDB header:replication/dna Chain: B: PDB Molecule:polymerase (dna directed) iota; PDBTitle: structure of the catalytic core of dna polymerase iota in2 complex with dna and dttp 98 d1jx4a2 not modelled 83.3 20 Fold:DNA/RNA polymerases Superfamily:DNA/RNA polymerases Family:Lesion bypass DNA polymerase (Y-family), catalytic domain 99 c2ziuA_ not modelled 81.9 15 PDB header:hydrolase Chain: A: PDB Molecule:mus81 protein; PDBTitle: crystal structure of the mus81-eme1 complex 100 c3n0uB_ not modelled 81.4 11 PDB header:hydrolase, lyase Chain: B: PDB Molecule:probable n-glycosylase/dna lyase; PDBTitle: crystal structure of tm1821, the 8-oxoguanine dna glycosylase of2 thermotoga maritima 101 c1t4gA_ not modelled 80.8 17 PDB header:recombination Chain: A: PDB Molecule:dna repair and recombination protein rada; PDBTitle: atpase in complex with amp-pnp 102 d2bcqa1 not modelled 80.8 31 Fold:SAM domain-like Superfamily:DNA polymerase beta, N-terminal domain-like Family:DNA polymerase beta, N-terminal domain-like 103 d1k1sa2 not modelled 80.4 22 Fold:DNA/RNA polymerases Superfamily:DNA/RNA polymerases Family:Lesion bypass DNA polymerase (Y-family), catalytic domain 104 c1k1qA_ not modelled 80.4 22 PDB header:transcription Chain: A: PDB Molecule:dbh protein; PDBTitle: crystal structure of a dinb family error prone dna2 polymerase from sulfolobus solfataricus 105 d2fmpa1 not modelled 80.2 25 Fold:SAM domain-like Superfamily:DNA polymerase beta, N-terminal domain-like Family:DNA polymerase beta, N-terminal domain-like 106 c3senD_ not modelled 79.7 12 PDB header:signaling protein Chain: D: PDB Molecule:caskin-1; PDBTitle: structure of caskin1 tandem sams 107 d1nzpa_ not modelled 79.1 31 Fold:SAM domain-like Superfamily:DNA polymerase beta, N-terminal domain-like Family:DNA polymerase beta, N-terminal domain-like 108 c2c5uA_ not modelled 79.1 18 PDB header:ligase Chain: A: PDB Molecule:rna ligase; PDBTitle: t4 rna ligase (rnl1) crystal structure 109 d1t94a2 not modelled 78.8 13 Fold:DNA/RNA polymerases Superfamily:DNA/RNA polymerases Family:Lesion bypass DNA polymerase (Y-family), catalytic domain 110 d1coka_ not modelled 78.1 15 Fold:SAM domain-like Superfamily:SAM/Pointed domain Family:SAM (sterile alpha motif) domain 111 c2fllA_ not modelled 77.7 15 PDB header:replication/dna Chain: A: PDB Molecule:dna polymerase iota; PDBTitle: ternary complex of human dna polymerase iota with dna and dttp 112 c1szpC_ not modelled 75.4 18 PDB header:dna binding protein Chain: C: PDB Molecule:dna repair protein rad51; PDBTitle: a crystal structure of the rad51 filament 113 c1mpgB_ not modelled 75.2 20 PDB header:hydrolase Chain: B: PDB Molecule:3-methyladenine dna glycosylase ii; PDBTitle: 3-methyladenine dna glycosylase ii from escherichia coli 114 d2bcqa2 not modelled 74.9 17 Fold:SAM domain-like Superfamily:PsbU/PolX domain-like Family:DNA polymerase beta-like, second domain 115 d1dk2a_ not modelled 74.5 23 Fold:SAM domain-like Superfamily:DNA polymerase beta, N-terminal domain-like Family:DNA polymerase beta, N-terminal domain-like 116 d2fmpa2 not modelled 74.4 15 Fold:SAM domain-like Superfamily:PsbU/PolX domain-like Family:DNA polymerase beta-like, second domain 117 d1jmsa1 not modelled 74.0 9 Fold:SAM domain-like Superfamily:DNA polymerase beta, N-terminal domain-like Family:DNA polymerase beta, N-terminal domain-like 118 c2kp7A_ not modelled 73.9 16 PDB header:hydrolase Chain: A: PDB Molecule:crossover junction endonuclease mus81; PDBTitle: solution nmr structure of the mus81 n-terminal hhh.2 northeast structural genomics consortium target mmt1a 119 c1s97D_ not modelled 73.5 19 PDB header:transferase/dna Chain: D: PDB Molecule:dna polymerase iv; PDBTitle: dpo4 with gt mismatch 120 c1vddC_ not modelled 73.4 19 PDB header:recombination Chain: C: PDB Molecule:recombination protein recr; PDBTitle: crystal structure of recombinational repair protein recr