Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP21189
DateThu Jan 5 11:38:01 GMT 2012
Unique Job ID6b5e9bca3885544a

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template c1q8iA_
Top template information
PDB header:transferase
Chain: A: PDB Molecule:dna polymerase ii;
PDBTitle: crystal structure of escherichia coli dna polymerase ii
Confidence and coverage
Confidence:100.0% Coverage: 90%
708 residues ( 90% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MAQAGFILTRHWRDTPQGTEVSFWLATDNGPLQVTLAPQESVAFIPADQVPRAQHILQGE
Secondary structure 
SS confidence 
Disorder  ?????
Disorder confidence 
 
   .........70.........80.........90.........100.........110.........120
Sequence  QGFRLTPLALKDFHRQPVYGLYCRAHRQLMNYEKRLREGGVTVYEADVRPPERYLMERFI
Secondary structure 
SS confidence 
Disorder 
Disorder confidence 
 
   .........130.........140.........150.........160.........170.........180
Sequence  TSPVWVEGDMHNGTIVNARLKPHPDYRPPLKWVSIDIETTRHGELYCIGLEGCGQRIVYM
Secondary structure 
SS confidence 
Disorder 
?
Disorder confidence 
 
   .........190.........200.........210.........220.........230.........240
Sequence  LGPENGDASSLDFELEYVASRPQLLEKLNAWFANYDPDVIIGWNVVQFDLRMLQKHAERY
Secondary structure 
SS confidence 
Disorder 
??
Disorder confidence 
 
   .........250.........260.........270.........280.........290.........300
Sequence  RLPLRLGRDNSELEWREHGFKNGVFFAQAKGRLIIDGIEALKSAFWNFSSFSLETVAQEL
Secondary structure 
SS confidence 
Disorder 
?
????????????????
??
Disorder confidence 
 
   .........310.........320.........330.........340.........350.........360
Sequence  LGEGKSIDNPWDRMDEIDRRFAEDKPALATYNLKDCELVTQIFHKTEIMPFLLERATVNG
Secondary structure 
SS confidence 
Disorder 
?
??
?
Disorder confidence 
 
   .........370.........380.........390.........400.........410.........420
Sequence  LPVDRHGGSVAAFGHLYFPRMHRAGYVAPNLGEVPPHASPGGYVMDSRPGLYDSVLVLDY
Secondary structure 
SS confidence 
Disorder 
?????
???????
Disorder confidence 
 
   .........430.........440.........450.........460.........470.........480
Sequence  KSLYPSIIRTFLIDPVGLVEGMAQPDPEHSTEGFLDAWFSREKHCLPEIVTNIWHGRDEA
Secondary structure 
SS confidence 
Disorder 
Disorder confidence 
 
   .........490.........500.........510.........520.........530.........540
Sequence  KRQGNKPLSQALKIIMNAFYGVLGTTACRFFDPRLASSITMRGHQIMRQTKALIEAQGYD
Secondary structure 
SS confidence 
Disorder 
?
Disorder confidence 
 
   .........550.........560.........570.........580.........590.........600
Sequence  VIYGDTDSTFVWLKGAHSEEEAAKIGRALVQHVNAWWAETLQKQRLTSALELEYETHFCR
Secondary structure 
SS confidence 
Disorder 
Disorder confidence 
 
   .........610.........620.........630.........640.........650.........660
Sequence  FLMPTIRGADTGSKKRYAGLIQEGDKQRMVFKGLETVRTDWTPLAQQFQQELYLRIFRNE
Secondary structure 
SS confidence 
Disorder 
?????
Disorder confidence 
 
   .........670.........680.........690.........700.........710.........720
Sequence  PYQEYVRETIDKLMAGELDARLVYRKRLRRPLSEYQRNVPPHVRAARLADEENQKRGRPL
Secondary structure 
SS confidence 
Disorder 
??
???????
Disorder confidence 
 
   .........730.........740.........750.........760.........770.........780
Sequence  QYQNRGTIKYVWTTNGPEPLDYQRSPLDYEHYLTRQLQPVAEGILPFIEDNFATLMTGQL
Secondary structure 
SS confidence 
Disorder  ?
?
??
?
?
????
Disorder confidence 
 
   ...
Sequence  GLF
Secondary structure 
SS confidence 
Disorder  ???
Disorder confidence 
 

Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 1q8i chain A

3D model

Region: 2 - 783
Aligned: 708
Modelled: 721
Confidence: 100.0%
Identity: 100%
PDB header:transferase
Chain: A: PDB Molecule:dna polymerase ii;
PDBTitle: crystal structure of escherichia coli dna polymerase ii

Phyre2

PDB 3iay chain A

3D model

Region: 4 - 774
Aligned: 734
Modelled: 771
Confidence: 100.0%
Identity: 22%
PDB header:transferase/dna
Chain: A: PDB Molecule:dna polymerase delta catalytic subunit;
PDBTitle: ternary complex of dna polymerase delta

Phyre2

PDB 2gv9 chain B

3D model

Region: 10 - 773
Aligned: 723
Modelled: 748
Confidence: 100.0%
Identity: 22%
PDB header:transferase
Chain: B: PDB Molecule:dna polymerase;
PDBTitle: crystal structure of the herpes simplex virus type 1 dna polymerase

Phyre2

PDB 2vwk chain A

3D model

Region: 6 - 782
Aligned: 712
Modelled: 756
Confidence: 100.0%
Identity: 25%
PDB header:dna replication
Chain: A: PDB Molecule:dna polymerase;
PDBTitle: uracil recognition in archaeal dna polymerases captured by2 x-ray crystallography. v93q polymerase variant

Phyre2

PDB 1d5a chain A

3D model

Region: 6 - 775
Aligned: 682
Modelled: 723
Confidence: 100.0%
Identity: 25%
PDB header:transferase
Chain: A: PDB Molecule:protein (dna polymerase);
PDBTitle: crystal structure of an archaebacterial dna polymerase2 d.tok. deposition of second native structure at 2.43 angstrom

Phyre2

PDB 2dtu chain A

3D model

Region: 12 - 783
Aligned: 721
Modelled: 733
Confidence: 100.0%
Identity: 20%
PDB header:transferase/dna
Chain: A: PDB Molecule:dna polymerase;
PDBTitle: crystal structure of the beta hairpin loop deletion variant2 of rb69 gp43 in complex with dna containing an abasic site3 analog

Phyre2

PDB 1s5j chain A

3D model

Region: 5 - 676
Aligned: 614
Modelled: 652
Confidence: 100.0%
Identity: 19%
PDB header:transferase
Chain: A: PDB Molecule:dna polymerase i;
PDBTitle: insight in dna replication: the crystal structure of dna2 polymerase b1 from the archaeon sulfolobus solfataricus

Phyre2

PDB 1tgo chain A domain 2

3D model

Region: 368 - 783
Aligned: 386
Modelled: 416
Confidence: 100.0%
Identity: 29%
Fold: DNA/RNA polymerases
Superfamily: DNA/RNA polymerases
Family: DNA polymerase I

Phyre2

PDB 1ih7 chain A domain 2

3D model

Region: 384 - 783
Aligned: 393
Modelled: 400
Confidence: 100.0%
Identity: 22%
Fold: DNA/RNA polymerases
Superfamily: DNA/RNA polymerases
Family: DNA polymerase I

Phyre2

PDB 1wn7 chain A domain 2

3D model

Region: 368 - 775
Aligned: 359
Modelled: 394
Confidence: 100.0%
Identity: 29%
Fold: DNA/RNA polymerases
Superfamily: DNA/RNA polymerases
Family: DNA polymerase I

Phyre2

PDB 1d5a chain A domain 2

3D model

Region: 368 - 775
Aligned: 355
Modelled: 390
Confidence: 100.0%
Identity: 29%
Fold: DNA/RNA polymerases
Superfamily: DNA/RNA polymerases
Family: DNA polymerase I

Phyre2

PDB 1qht chain A domain 2

3D model

Region: 368 - 770
Aligned: 346
Modelled: 372
Confidence: 100.0%
Identity: 29%
Fold: DNA/RNA polymerases
Superfamily: DNA/RNA polymerases
Family: DNA polymerase I

Phyre2

PDB 1q8i chain A domain 2

3D model

Region: 390 - 783
Aligned: 332
Modelled: 333
Confidence: 100.0%
Identity: 100%
Fold: DNA/RNA polymerases
Superfamily: DNA/RNA polymerases
Family: DNA polymerase I

Phyre2

PDB 1q8i chain A domain 1

3D model

Region: 2 - 389
Aligned: 376
Modelled: 388
Confidence: 100.0%
Identity: 100%
Fold: Ribonuclease H-like motif
Superfamily: Ribonuclease H-like
Family: DnaQ-like 3'-5' exonuclease

Phyre2

PDB 1s5j chain A domain 2

3D model

Region: 370 - 697
Aligned: 289
Modelled: 328
Confidence: 100.0%
Identity: 23%
Fold: DNA/RNA polymerases
Superfamily: DNA/RNA polymerases
Family: DNA polymerase I

Phyre2

PDB 1qht chain A domain 1

3D model

Region: 6 - 369
Aligned: 329
Modelled: 343
Confidence: 100.0%
Identity: 20%
Fold: Ribonuclease H-like motif
Superfamily: Ribonuclease H-like
Family: DnaQ-like 3'-5' exonuclease

Phyre2

PDB 1tgo chain A domain 1

3D model

Region: 6 - 369
Aligned: 329
Modelled: 341
Confidence: 100.0%
Identity: 19%
Fold: Ribonuclease H-like motif
Superfamily: Ribonuclease H-like
Family: DnaQ-like 3'-5' exonuclease

Phyre2

PDB 1wn7 chain A domain 1

3D model

Region: 6 - 369
Aligned: 329
Modelled: 343
Confidence: 100.0%
Identity: 20%
Fold: Ribonuclease H-like motif
Superfamily: Ribonuclease H-like
Family: DnaQ-like 3'-5' exonuclease

Phyre2

PDB 1d5a chain A domain 1

3D model

Region: 6 - 369
Aligned: 329
Modelled: 343
Confidence: 100.0%
Identity: 21%
Fold: Ribonuclease H-like motif
Superfamily: Ribonuclease H-like
Family: DnaQ-like 3'-5' exonuclease

Phyre2

PDB 1s5j chain A domain 1

3D model

Region: 5 - 369
Aligned: 345
Modelled: 361
Confidence: 100.0%
Identity: 13%
Fold: Ribonuclease H-like motif
Superfamily: Ribonuclease H-like
Family: DnaQ-like 3'-5' exonuclease

Phyre2
1
c1q8iA_
2
c3iayA_
3
c2gv9B_
4
c2vwkA_
5
c1d5aA_
6
c2dtuA_
7
c1s5jA_
8
d1tgoa2
9
d1ih7a2
10
d1wn7a2
11
d1d5aa2
12
d1qhta2
13
d1q8ia2
14
d1q8ia1
15
d1s5ja2
16
d1qhta1
17
d1tgoa1
18
d1wn7a1
19
d1d5aa1
20
d1s5ja1
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
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71
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73
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75
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96
97
98
99



Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c1q8iA_
100.0 100 PDB header:transferase
Chain: A: PDB Molecule:dna polymerase ii;
PDBTitle: crystal structure of escherichia coli dna polymerase ii
2c3iayA_
100.0 22 PDB header:transferase/dna
Chain: A: PDB Molecule:dna polymerase delta catalytic subunit;
PDBTitle: ternary complex of dna polymerase delta
3c2gv9B_
100.0 22 PDB header:transferase
Chain: B: PDB Molecule:dna polymerase;
PDBTitle: crystal structure of the herpes simplex virus type 1 dna polymerase
4c2vwkA_
100.0 25 PDB header:dna replication
Chain: A: PDB Molecule:dna polymerase;
PDBTitle: uracil recognition in archaeal dna polymerases captured by2 x-ray crystallography. v93q polymerase variant
5c1d5aA_
100.0 25 PDB header:transferase
Chain: A: PDB Molecule:protein (dna polymerase);
PDBTitle: crystal structure of an archaebacterial dna polymerase2 d.tok. deposition of second native structure at 2.43 angstrom
6c2dtuA_
100.0 20 PDB header:transferase/dna
Chain: A: PDB Molecule:dna polymerase;
PDBTitle: crystal structure of the beta hairpin loop deletion variant2 of rb69 gp43 in complex with dna containing an abasic site3 analog
7c1s5jA_
100.0 19 PDB header:transferase
Chain: A: PDB Molecule:dna polymerase i;
PDBTitle: insight in dna replication: the crystal structure of dna2 polymerase b1 from the archaeon sulfolobus solfataricus
8d1tgoa2
100.0 29 Fold:DNA/RNA polymerases
Superfamily:DNA/RNA polymerases
Family:DNA polymerase I
9d1ih7a2
100.0 22 Fold:DNA/RNA polymerases
Superfamily:DNA/RNA polymerases
Family:DNA polymerase I
10d1wn7a2
100.0 29 Fold:DNA/RNA polymerases
Superfamily:DNA/RNA polymerases
Family:DNA polymerase I
11d1d5aa2
100.0 29 Fold:DNA/RNA polymerases
Superfamily:DNA/RNA polymerases
Family:DNA polymerase I
12d1qhta2
100.0 29 Fold:DNA/RNA polymerases
Superfamily:DNA/RNA polymerases
Family:DNA polymerase I
13d1q8ia2
100.0 100 Fold:DNA/RNA polymerases
Superfamily:DNA/RNA polymerases
Family:DNA polymerase I
14d1q8ia1
100.0 100 Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:DnaQ-like 3'-5' exonuclease
15d1s5ja2
100.0 23 Fold:DNA/RNA polymerases
Superfamily:DNA/RNA polymerases
Family:DNA polymerase I
16d1qhta1
100.0 20 Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:DnaQ-like 3'-5' exonuclease
17d1tgoa1
100.0 19 Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:DnaQ-like 3'-5' exonuclease
18d1wn7a1
100.0 20 Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:DnaQ-like 3'-5' exonuclease
19d1d5aa1
100.0 21 Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:DnaQ-like 3'-5' exonuclease
20d1s5ja1
100.0 13 Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:DnaQ-like 3'-5' exonuclease
21d1ih7a1
not modelled 100.0 17 Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:DnaQ-like 3'-5' exonuclease
22d1noya_
not modelled 100.0 16 Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:DnaQ-like 3'-5' exonuclease
23c2ex3I_
not modelled 99.9 17 PDB header:transferase/replication
Chain: I: PDB Molecule:dna polymerase;
PDBTitle: bacteriophage phi29 dna polymerase bound to terminal protein
24d1x9ma1
not modelled 99.7 14 Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:DnaQ-like 3'-5' exonuclease
25d2py5a2
not modelled 99.6 18 Fold:DNA/RNA polymerases
Superfamily:DNA/RNA polymerases
Family:DNA polymerase I
26c2kzzA_
not modelled 98.4 18 PDB header:transferase/dna
Chain: A: PDB Molecule:protein (dna polymerase i);
PDBTitle: klenow fragment with normal substrate and zinc only
27c1tk0A_
not modelled 98.2 18 PDB header:transferase/electron transport/dna
Chain: A: PDB Molecule:dna polymerase;
PDBTitle: t7 dna polymerase ternary complex with 8 oxo guanosine and2 ddctp at the insertion site
28d2qxfa1
not modelled 98.1 15 Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:DnaQ-like 3'-5' exonuclease
29d2guia1
not modelled 97.8 13 Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:DnaQ-like 3'-5' exonuclease
30d1y97a1
not modelled 97.8 22 Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:DnaQ-like 3'-5' exonuclease
31c1njzA_
not modelled 97.7 13 PDB header:transferase/dna
Chain: A: PDB Molecule:dna polymerase i;
PDBTitle: cytosine-thymine mismatch at the polymerase active site
32d1kfsa1
not modelled 97.6 15 Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:DnaQ-like 3'-5' exonuclease
33d2f96a1
not modelled 97.6 16 Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:DnaQ-like 3'-5' exonuclease
34d1wlja_
not modelled 96.6 13 Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:DnaQ-like 3'-5' exonuclease
35c2e6mA_
not modelled 96.5 17 PDB header:hydrolase
Chain: A: PDB Molecule:werner syndrome atp-dependent helicase homolog;
PDBTitle: structure of mouse werner exonuclease domain
36d1yt3a3
not modelled 96.4 15 Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:DnaQ-like 3'-5' exonuclease
37c3u6fA_
not modelled 96.1 21 PDB header:hydrolase/dna
Chain: A: PDB Molecule:three prime repair exonuclease 1;
PDBTitle: mouse trex1 d200n mutant
38c2p1jB_
not modelled 95.8 27 PDB header:transferase
Chain: B: PDB Molecule:dna polymerase iii polc-type;
PDBTitle: crystal structure of a polc-type dna polymerase iii2 exonuclease domain from thermotoga maritima
39c2is3B_
not modelled 95.5 24 PDB header:hydrolase
Chain: B: PDB Molecule:ribonuclease t;
PDBTitle: crystal structure of escherichia coli rnase t
40c3tr8A_
not modelled 95.4 17 PDB header:hydrolase
Chain: A: PDB Molecule:oligoribonuclease;
PDBTitle: structure of an oligoribonuclease (orn) from coxiella burnetii
41d1w0ha_
not modelled 95.4 17 Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:DnaQ-like 3'-5' exonuclease
42d2py5a1
not modelled 95.3 16 Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:DnaQ-like 3'-5' exonuclease
43d2igia1
not modelled 94.6 20 Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:DnaQ-like 3'-5' exonuclease
44d2hhva1
not modelled 94.3 11 Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:DnaQ-like 3'-5' exonuclease
45d3b6oa1
not modelled 94.3 23 Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:DnaQ-like 3'-5' exonuclease
46c2xriA_
not modelled 93.9 19 PDB header:hydrolase
Chain: A: PDB Molecule:eri1 exoribonuclease 3;
PDBTitle: crystal structure of human eri1 exoribonuclease 3
47c2gbzA_
not modelled 93.6 17 PDB header:hydrolase
Chain: A: PDB Molecule:oligoribonuclease;
PDBTitle: the crystal structure of xc847 from xanthomonas campestris: a 3-52 oligoribonuclease of dnaq fold family with a novel opposingly-shifted3 helix
48c4ktqA_
not modelled 93.3 20 PDB header:transferase/dna
Chain: A: PDB Molecule:protein (large fragment of dna polymerase i);
PDBTitle: binary complex of the large fragment of dna polymerase i2 from t. aquaticus bound to a primer/template dna
49d1j9aa_
not modelled 93.2 17 Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:DnaQ-like 3'-5' exonuclease
50d2hbka2
not modelled 92.4 21 Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:DnaQ-like 3'-5' exonuclease
51c1yt3A_
not modelled 92.2 14 PDB header:hydrolase,translation
Chain: A: PDB Molecule:ribonuclease d;
PDBTitle: crystal structure of escherichia coli rnase d, an2 exoribonuclease involved in structured rna processing
52c2hbkA_
not modelled 90.8 21 PDB header:hydrolase, gene regulation
Chain: A: PDB Molecule:exosome complex exonuclease rrp6;
PDBTitle: structure of the yeast nuclear exosome component, rrp6p,2 reveals an interplay between the active site and the hrdc3 domain; protein in complex with mn
53d1vk0a_
not modelled 88.8 16 Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:DnaQ-like 3'-5' exonuclease
54c3ikmD_
not modelled 80.1 21 PDB header:transferase
Chain: D: PDB Molecule:dna polymerase subunit gamma-1;
PDBTitle: crystal structure of human mitochondrial dna polymerase2 holoenzyme
55c1zbhA_
not modelled 78.7 17 PDB header:hydrolase/rna
Chain: A: PDB Molecule:3'-5' exonuclease eri1;
PDBTitle: 3'-end specific recognition of histone mrna stem-loop by 3'-2 exonuclease
56c3cymA_
not modelled 69.9 15 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein bad_0989;
PDBTitle: crystal structure of protein bad_0989 from bifidobacterium2 adolescentis
57c1zbuB_
not modelled 62.0 17 PDB header:hydrolase
Chain: B: PDB Molecule:3'-5' exonuclease eri1;
PDBTitle: crystal structure of full-length 3'-exonuclease
58c3sahA_
not modelled 52.6 16 PDB header:hydrolase
Chain: A: PDB Molecule:exosome component 10;
PDBTitle: crystal structure of the human rrp6 catalytic domain with y436a2 mutation in the catalytic site
59c3fniA_
not modelled 49.1 11 PDB header:oxidoreductase
Chain: A: PDB Molecule:putative diflavin flavoprotein a 3;
PDBTitle: crystal structure of a diflavin flavoprotein a3 (all3895) from nostoc2 sp., northeast structural genomics consortium target nsr431a
60d1uoca_
not modelled 44.0 17 Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:CAF1-like ribonuclease
61c1q7tA_
not modelled 30.5 18 PDB header:hydrolase
Chain: A: PDB Molecule:hypothetical protein rv1170;
PDBTitle: rv1170 (mshb) from mycobacterium tuberculosis
62c3cm6A_
not modelled 27.0 17 PDB header:hydrolase, apoptosis
Chain: A: PDB Molecule:cell death-related nuclease 4;
PDBTitle: crystal structure of cell-death related nuclease 4 (crn-4)2 bound with er
63d1q74a_
not modelled 26.9 17 Fold:LmbE-like
Superfamily:LmbE-like
Family:LmbE-like
64d1n71a_
not modelled 21.8 23 Fold:Acyl-CoA N-acyltransferases (Nat)
Superfamily:Acyl-CoA N-acyltransferases (Nat)
Family:N-acetyl transferase, NAT
65c3f8kA_
not modelled 18.0 11 PDB header:transferase
Chain: A: PDB Molecule:protein acetyltransferase;
PDBTitle: crystal structure of protein acetyltransferase (pat) from2 sulfolobus solfataricus
66d1wdua_
not modelled 17.5 27 Fold:DNase I-like
Superfamily:DNase I-like
Family:DNase I-like
67c1g2cS_
not modelled 17.1 38 PDB header:viral protein
Chain: S: PDB Molecule:fusion protein (f);
PDBTitle: human respiratory syncytial virus fusion protein core
68d1bo4a_
not modelled 16.4 26 Fold:Acyl-CoA N-acyltransferases (Nat)
Superfamily:Acyl-CoA N-acyltransferases (Nat)
Family:N-acetyl transferase, NAT
69c1bo4A_
not modelled 16.4 26 PDB header:transferase
Chain: A: PDB Molecule:protein (serratia marcescens aminoglycoside-3-n-
PDBTitle: crystal structure of a gcn5-related n-acetyltransferase: serratia2 marescens aminoglycoside 3-n-acetyltransferase
70c3zquA_
not modelled 16.3 29 PDB header:lyase
Chain: A: PDB Molecule:probable aromatic acid decarboxylase;
PDBTitle: structure of a probable aromatic acid decarboxylase
71d1uana_
not modelled 16.0 20 Fold:LmbE-like
Superfamily:LmbE-like
Family:LmbE-like
72c2ixdB_
not modelled 15.4 8 PDB header:hydrolase
Chain: B: PDB Molecule:lmbe-related protein;
PDBTitle: crystal structure of the putative deacetylase bc1534 from2 bacilus cereus
73d1gx1a_
not modelled 15.1 18 Fold:Bacillus chorismate mutase-like
Superfamily:IpsF-like
Family:IpsF-like
74c3gjzB_
not modelled 15.0 16 PDB header:immune system
Chain: B: PDB Molecule:microcin immunity protein mccf;
PDBTitle: crystal structure of microcin immunity protein mccf from bacillus2 anthracis str. ames
75d1iv3a_
not modelled 14.1 18 Fold:Bacillus chorismate mutase-like
Superfamily:IpsF-like
Family:IpsF-like
76d1t0aa_
not modelled 13.8 22 Fold:Bacillus chorismate mutase-like
Superfamily:IpsF-like
Family:IpsF-like
77d1vh8a_
not modelled 13.6 16 Fold:Bacillus chorismate mutase-like
Superfamily:IpsF-like
Family:IpsF-like
78c3re3B_
not modelled 13.5 19 PDB header:lyase
Chain: B: PDB Molecule:2-c-methyl-d-erythritol 2,4-cyclodiphosphate synthase;
PDBTitle: crystal structure of 2-c-methyl-d-erythritol 2,4-cyclodiphosphate2 synthase from francisella tularensis
79d1y9wa1
not modelled 13.4 22 Fold:Acyl-CoA N-acyltransferases (Nat)
Superfamily:Acyl-CoA N-acyltransferases (Nat)
Family:N-acetyl transferase, NAT
80d1rfza_
not modelled 13.0 39 Fold:YutG-like
Superfamily:YutG-like
Family:YutG-like
81c3i9sA_
not modelled 12.3 11 PDB header:transferase
Chain: A: PDB Molecule:integron cassette protein;
PDBTitle: structure from the mobile metagenome of v.cholerae. integron2 cassette protein vch_cass6
82c2e1nA_
not modelled 12.1 7 PDB header:circadian clock protein
Chain: A: PDB Molecule:pex;
PDBTitle: crystal structure of the cyanobacterium circadian clock modifier pex
83d1o6ca_
not modelled 12.0 15 Fold:UDP-Glycosyltransferase/glycogen phosphorylase
Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase
Family:UDP-N-acetylglucosamine 2-epimerase
84c2wvmA_
not modelled 11.9 18 PDB header:transferase
Chain: A: PDB Molecule:mannosyl-3-phosphoglycerate synthase;
PDBTitle: h309a mutant of mannosyl-3-phosphoglycerate synthase from2 thermus thermophilus hb27 in complex with3 gdp-alpha-d-mannose and mg(ii)
85c2xppB_
not modelled 11.6 75 PDB header:transcription
Chain: B: PDB Molecule:chromatin structure modulator;
PDBTitle: crystal structure of a spt6-iws1(spn1) complex from2 encephalitozoon cuniculi, form iii
86d1w55a2
not modelled 11.5 14 Fold:Bacillus chorismate mutase-like
Superfamily:IpsF-like
Family:IpsF-like
87c3bf4B_
not modelled 11.1 26 PDB header:unknown function
Chain: B: PDB Molecule:ethyl tert-butyl ether degradation ethd protein;
PDBTitle: crystal structure of an ethd-like protein (reut_b5694) from ralstonia2 eutropha jmp134 at 2.10 a resolution
88d1s3za_
not modelled 11.0 15 Fold:Acyl-CoA N-acyltransferases (Nat)
Superfamily:Acyl-CoA N-acyltransferases (Nat)
Family:N-acetyl transferase, NAT
89c3tebA_
not modelled 10.6 29 PDB header:hydrolase
Chain: A: PDB Molecule:endonuclease/exonuclease/phosphatase;
PDBTitle: endonuclease/exonuclease/phosphatase family protein from leptotrichia2 buccalis c-1013-b
90d1q2ya_
not modelled 10.1 15 Fold:Acyl-CoA N-acyltransferases (Nat)
Superfamily:Acyl-CoA N-acyltransferases (Nat)
Family:N-acetyl transferase, NAT
91d1ghea_
not modelled 9.9 15 Fold:Acyl-CoA N-acyltransferases (Nat)
Superfamily:Acyl-CoA N-acyltransferases (Nat)
Family:N-acetyl transferase, NAT
92d1r57a_
not modelled 9.9 10 Fold:Acyl-CoA N-acyltransferases (Nat)
Superfamily:Acyl-CoA N-acyltransferases (Nat)
Family:N-acetyl transferase, NAT
93c3hlyA_
not modelled 9.8 13 PDB header:flavoprotein
Chain: A: PDB Molecule:flavodoxin-like domain;
PDBTitle: crystal structure of the flavodoxin-like domain from2 synechococcus sp q5mzp6_synp6 protein. northeast structural3 genomics consortium target snr135d.
94d1a6db2
not modelled 9.7 11 Fold:The "swivelling" beta/beta/alpha domain
Superfamily:GroEL apical domain-like
Family:Group II chaperonin (CCT, TRIC), apical domain
95c3qd8M_
not modelled 9.7 11 PDB header:metal binding protein
Chain: M: PDB Molecule:probable bacterioferritin bfrb;
PDBTitle: crystal structure of mycobacterium tuberculosis bfrb
96d2auna2
not modelled 9.5 22 Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:LD-carboxypeptidase A N-terminal domain-like
97d2i09a2
not modelled 8.9 14 Fold:DeoB insert domain-like
Superfamily:DeoB insert domain-like
Family:DeoB insert domain-like
98d2d5ra1
not modelled 8.9 23 Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:CAF1-like ribonuclease
99d2beia1
not modelled 8.5 11 Fold:Acyl-CoA N-acyltransferases (Nat)
Superfamily:Acyl-CoA N-acyltransferases (Nat)
Family:N-acetyl transferase, NAT

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0