Email l.a.kelley@imperial.ac.uk Description Q00037 Date Thu Jan 5 12:33:19 GMT 2012 Unique Job ID 6b36dd0132f99367

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c1x5bA_ 75.9 10 PDB header:protein binding Chain: A: PDB Molecule:signal transducing adaptor molecule 2; PDBTitle: the solution structure of the vhs domain of human signal2 transducing adaptor molecule 2 2 d1dvpa1 61.5 9 Fold:alpha-alpha superhelix Superfamily:ENTH/VHS domain Family:VHS domain 3 c3zyqA_ 47.8 17 PDB header:signaling Chain: A: PDB Molecule:hepatocyte growth factor-regulated tyrosine kinase PDBTitle: crystal structure of the tandem vhs and fyve domains of hepatocyte2 growth factor-regulated tyrosine kinase substrate (hgs-hrs) at 1.483 a resolution 4 d1elka_ 42.7 10 Fold:alpha-alpha superhelix Superfamily:ENTH/VHS domain Family:VHS domain 5 d2ezha_ 42.5 11 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Recombinase DNA-binding domain 6 c2w36B_ 40.1 20 PDB header:hydrolase Chain: B: PDB Molecule:endonuclease v; PDBTitle: structures of endonuclease v with dna reveal initiation of2 deaminated adenine repair 7 c3i26C_ 39.9 22 PDB header:hydrolase Chain: C: PDB Molecule:hemagglutinin-esterase; PDBTitle: structure of bovine torovirus hemagglutinin-esterase 8 d1ujka_ 37.9 12 Fold:alpha-alpha superhelix Superfamily:ENTH/VHS domain Family:VHS domain 9 c3onlB_ 37.1 14 PDB header:protein transport Chain: B: PDB Molecule:epsin-3; PDBTitle: yeast ent3_enth-vti1p_habc complex structure 10 c3gocB_ 36.9 33 PDB header:hydrolase Chain: B: PDB Molecule:endonuclease v; PDBTitle: crystal structure of the endonuclease v (sav1684) from streptomyces2 avermitilis. northeast structural genomics consortium target svr196 11 c3ga2A_ 36.9 18 PDB header:hydrolase Chain: A: PDB Molecule:endonuclease v; PDBTitle: crystal structure of the endonuclease_v (bsu36170) from2 bacillus subtilis, northeast structural genomics3 consortium target sr624 12 d1oz9a_ 34.1 50 Fold:Zincin-like Superfamily:Metalloproteases ("zincins"), catalytic domain Family:Predicted metal-dependent hydrolase 13 d2ezia_ 33.5 14 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Recombinase DNA-binding domain 14 c2r18A_ 31.5 11 PDB header:viral protein Chain: A: PDB Molecule:capsid assembly protein vp3; PDBTitle: structural insights into the multifunctional protein vp3 of2 birnaviruses 15 d1xm5a_ 31.1 42 Fold:Zincin-like Superfamily:Metalloproteases ("zincins"), catalytic domain Family:Predicted metal-dependent hydrolase 16 d1tvia_ 30.3 42 Fold:Zincin-like Superfamily:Metalloproteases ("zincins"), catalytic domain Family:Predicted metal-dependent hydrolase 17 d1dp7p_ 29.3 8 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:P4 origin-binding domain-like 18 d1cy5a_ 28.9 7 Fold:DEATH domain Superfamily:DEATH domain Family:Caspase recruitment domain, CARD 19 c1xaxA_ 27.1 42 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical upf0054 protein hi0004; PDBTitle: nmr structure of hi0004, a putative essential gene product2 from haemophilus influenzae 20 c3sqgE_ 23.1 27 PDB header:transferase Chain: E: PDB Molecule:methyl-coenzyme m reductase, beta subunit; PDBTitle: crystal structure of a methyl-coenzyme m reductase purified from black2 sea mats 21 d1t1ua2 not modelled 22.0 19 Fold:CoA-dependent acyltransferases Superfamily:CoA-dependent acyltransferases Family:Choline/Carnitine O-acyltransferase 22 c2eqoA_ not modelled 21.9 24 PDB header:transcription Chain: A: PDB Molecule:tnf receptor-associated factor 3-interacting PDBTitle: solution structure of the stn_traf3ip1_nd domain of2 interleukin 13 receptor alpha 1-binding protein-1 [homo3 sapiens] 23 d1dmga_ not modelled 21.2 14 Fold:Ribosomal protein L4 Superfamily:Ribosomal protein L4 Family:Ribosomal protein L4 24 c3pvlA_ not modelled 20.5 14 PDB header:motor protein/protein transport Chain: A: PDB Molecule:myosin viia isoform 1; PDBTitle: structure of myosin viia myth4-ferm-sh3 in complex with the cen1 of2 sans 25 c3ghgK_ not modelled 20.0 31 PDB header:blood clotting Chain: K: PDB Molecule:fibrinogen beta chain; PDBTitle: crystal structure of human fibrinogen 26 d2opla1 not modelled 19.5 19 Fold:OsmC-like Superfamily:OsmC-like Family:Ohr/OsmC resistance proteins 27 d1ndba2 not modelled 19.3 20 Fold:CoA-dependent acyltransferases Superfamily:CoA-dependent acyltransferases Family:Choline/Carnitine O-acyltransferase 28 c1h0mD_ not modelled 19.2 10 PDB header:transcription/dna Chain: D: PDB Molecule:transcriptional activator protein trar; PDBTitle: three-dimensional structure of the quorum sensing protein2 trar bound to its autoinducer and to its target dna 29 c1zljE_ not modelled 19.0 7 PDB header:transcription Chain: E: PDB Molecule:dormancy survival regulator; PDBTitle: crystal structure of the mycobacterium tuberculosis hypoxic2 response regulator dosr c-terminal domain 30 c1hbmE_ not modelled 18.0 33 PDB header:methanogenesis Chain: E: PDB Molecule:methyl-coenzyme m reductase i beta subunit; PDBTitle: methyl-coenzyme m reductase enzyme product complex 31 c3edeB_ not modelled 18.0 14 PDB header:hydrolase Chain: B: PDB Molecule:cyclomaltodextrinase; PDBTitle: structural base for cyclodextrin hydrolysis 32 d1a04a1 not modelled 17.9 13 Fold:DNA/RNA-binding 3-helical bundle Superfamily:C-terminal effector domain of the bipartite response regulators Family:GerE-like (LuxR/UhpA family of transcriptional regulators) 33 d1h3ga3 not modelled 17.8 14 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:Amylase, catalytic domain 34 d1hbnb1 not modelled 17.7 33 Fold:Methyl-coenzyme M reductase alpha and beta chain C-terminal domain Superfamily:Methyl-coenzyme M reductase alpha and beta chain C-terminal domain Family:Methyl-coenzyme M reductase alpha and beta chain C-terminal domain 35 c2vgqA_ not modelled 17.3 19 PDB header:immune system/transport Chain: A: PDB Molecule:maltose-binding periplasmic protein, PDBTitle: crystal structure of human ips-1 card 36 c1deqO_ not modelled 17.2 33 PDB header: PDB COMPND: 37 d1nm8a2 not modelled 17.0 20 Fold:CoA-dependent acyltransferases Superfamily:CoA-dependent acyltransferases Family:Choline/Carnitine O-acyltransferase 38 d1fs1b2 not modelled 16.6 33 Fold:POZ domain Superfamily:POZ domain Family:BTB/POZ domain 39 c2gdvA_ not modelled 16.1 5 PDB header:transferase Chain: A: PDB Molecule:sucrose phosphorylase; PDBTitle: sucrose phosphorylase from bifidobacterium adolescentis2 reacted with sucrose 40 d1puza_ not modelled 15.7 15 Fold:YgfY-like Superfamily:YgfY-like Family:YgfY-like 41 d1or7a1 not modelled 15.4 13 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Sigma3 and sigma4 domains of RNA polymerase sigma factors Family:Sigma4 domain 42 c2vdcF_ not modelled 15.0 14 PDB header:oxidoreductase Chain: F: PDB Molecule:glutamate synthase [nadph] large chain; PDBTitle: the 9.5 a resolution structure of glutamate synthase from2 cryo-electron microscopy and its oligomerization behavior3 in solution: functional implications. 43 d1nexa2 not modelled 14.9 33 Fold:POZ domain Superfamily:POZ domain Family:BTB/POZ domain 44 d2i3oa1 not modelled 14.5 10 Fold:Ntn hydrolase-like Superfamily:N-terminal nucleophile aminohydrolases (Ntn hydrolases) Family:Gamma-glutamyltranspeptidase-like 45 c2w31A_ not modelled 13.9 7 PDB header:oxygen transport Chain: A: PDB Molecule:globin; PDBTitle: globin domain of geobacter sulfurreducens globin-coupled2 sensor 46 c1e6yE_ not modelled 13.9 33 PDB header:oxidoreductase Chain: E: PDB Molecule:methyl-coenzyme m reductase i beta subunit; PDBTitle: methyl-coenzyme m reductase from methanosarcina barkeri 47 d1xl7a2 not modelled 13.8 21 Fold:CoA-dependent acyltransferases Superfamily:CoA-dependent acyltransferases Family:Choline/Carnitine O-acyltransferase 48 d2hc5a1 not modelled 13.8 13 Fold:FlaG-like Superfamily:FlaG-like Family:FlaG-like 49 c2rnqA_ not modelled 13.6 36 PDB header:transcription Chain: A: PDB Molecule:transcription initiation factor iie subunit PDBTitle: solution structure of the c-terminal acidic domain of tfiie2 alpha 50 c2jtxA_ not modelled 13.6 36 PDB header:transcription Chain: A: PDB Molecule:transcription initiation factor iie subunit PDBTitle: nmr structure of the tfiie-alpha carboxyl terminus 51 c1dvpA_ not modelled 13.3 13 PDB header:transferase Chain: A: PDB Molecule:hepatocyte growth factor-regulated tyrosine PDBTitle: crystal structure of the vhs and fyve tandem domains of hrs,2 a protein involved in membrane trafficking and signal3 transduction 52 c2lcvA_ not modelled 13.1 17 PDB header:transcription regulator Chain: A: PDB Molecule:hth-type transcriptional repressor cytr; PDBTitle: structure of the cytidine repressor dna-binding domain; an alternate2 calculation 53 d1e6yb1 not modelled 13.1 33 Fold:Methyl-coenzyme M reductase alpha and beta chain C-terminal domain Superfamily:Methyl-coenzyme M reductase alpha and beta chain C-terminal domain Family:Methyl-coenzyme M reductase alpha and beta chain C-terminal domain 54 c3g5bA_ not modelled 13.0 16 PDB header:apoptosis Chain: A: PDB Molecule:netrin receptor unc5b; PDBTitle: the structure of unc5b cytoplasmic domain 55 c3jroC_ not modelled 13.0 19 PDB header:transport protein, structural protein Chain: C: PDB Molecule:nucleoporin nup84; PDBTitle: nup84-nup145c-sec13 edge element of the npc lattice 56 c1xrxD_ not modelled 12.9 29 PDB header:replication inhibitor Chain: D: PDB Molecule:seqa protein; PDBTitle: crystal structure of a dna-binding protein 57 d1xrxa1 not modelled 12.9 29 Fold:Ribbon-helix-helix Superfamily:Ribbon-helix-helix Family:SeqA N-terminal domain-like 58 c3qp5C_ not modelled 12.7 12 PDB header:transcription Chain: C: PDB Molecule:cvir transcriptional regulator; PDBTitle: crystal structure of cvir bound to antagonist chlorolactone (cl) 59 d1e6vb1 not modelled 12.6 33 Fold:Methyl-coenzyme M reductase alpha and beta chain C-terminal domain Superfamily:Methyl-coenzyme M reductase alpha and beta chain C-terminal domain Family:Methyl-coenzyme M reductase alpha and beta chain C-terminal domain 60 d1v74b_ not modelled 12.3 25 Fold:Four-helical up-and-down bundle Superfamily:Colicin D immunity protein Family:Colicin D immunity protein 61 d1hw6a_ not modelled 12.1 15 Fold:TIM beta/alpha-barrel Superfamily:NAD(P)-linked oxidoreductase Family:Aldo-keto reductases (NADP) 62 d1l3la1 not modelled 12.1 10 Fold:DNA/RNA-binding 3-helical bundle Superfamily:C-terminal effector domain of the bipartite response regulators Family:GerE-like (LuxR/UhpA family of transcriptional regulators) 63 c2krfB_ not modelled 12.0 8 PDB header:transcription Chain: B: PDB Molecule:transcriptional regulatory protein coma; PDBTitle: nmr solution structure of the dna binding domain of competence protein2 a 64 d1fsea_ not modelled 11.9 20 Fold:DNA/RNA-binding 3-helical bundle Superfamily:C-terminal effector domain of the bipartite response regulators Family:GerE-like (LuxR/UhpA family of transcriptional regulators) 65 c3lvzA_ not modelled 11.9 12 PDB header:hydrolase Chain: A: PDB Molecule:blr6230 protein; PDBTitle: new refinement of the crystal structure of bjp-1, a subclass b32 metallo-beta-lactamase of bradyrhizobium japonicum 66 c3sztB_ not modelled 11.8 13 PDB header:transcription Chain: B: PDB Molecule:quorum-sensing control repressor; PDBTitle: quorum sensing control repressor, qscr, bound to n-3-oxo-dodecanoyl-l-2 homoserine lactone 67 c2jq6A_ not modelled 11.3 17 PDB header:metal binding protein Chain: A: PDB Molecule:eh domain-containing protein 1; PDBTitle: structure of eh-domain of ehd1 68 d1q5ma_ not modelled 11.3 14 Fold:TIM beta/alpha-barrel Superfamily:NAD(P)-linked oxidoreductase Family:Aldo-keto reductases (NADP) 69 c2jpcA_ not modelled 11.1 10 PDB header:dna binding protein Chain: A: PDB Molecule:ssrb; PDBTitle: ssrb dna binding protein 70 c2hpcF_ not modelled 11.1 38 PDB header:blood clotting Chain: F: PDB Molecule:fibrinogen, gamma polypeptide; PDBTitle: crystal structure of fragment d from human fibrinogen complexed with2 gly-pro-arg-pro-amide. 71 d1gvia3 not modelled 11.0 12 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:Amylase, catalytic domain 72 c3fiaA_ not modelled 10.9 13 PDB header:protein binding Chain: A: PDB Molecule:intersectin-1; PDBTitle: crystal structure of the eh 1 domain from human intersectin-2 1 protein. northeast structural genomics consortium target3 hr3646e. 73 c1qhoA_ not modelled 10.9 13 PDB header:hydrolase Chain: A: PDB Molecule:alpha-amylase; PDBTitle: five-domain alpha-amylase from bacillus stearothermophilus,2 maltose/acarbose complex 74 d2pbea1 not modelled 10.8 18 Fold:PAP/OAS1 substrate-binding domain Superfamily:PAP/OAS1 substrate-binding domain Family:AadK C-terminal domain-like 75 c3kblA_ not modelled 10.8 38 PDB header:protein binding Chain: A: PDB Molecule:female germline-specific tumor suppressor gld-1; PDBTitle: crystal structure of the gld-1 homodimerization domain from2 caenorhabditis elegans n169a mutant at 2.28 a resolution 76 d2ve8a1 not modelled 10.8 23 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:FtsK C-terminal domain-like 77 c2qy7A_ not modelled 10.6 18 PDB header:protein binding Chain: A: PDB Molecule:clathrin interactor 1; PDBTitle: crystal structure of human epsinr enth domain 78 d1q7ha2 not modelled 10.6 46 Fold:Cystatin-like Superfamily:Pre-PUA domain Family:Hypothetical protein Ta1423, N-terminal domain 79 d1tuka1 not modelled 10.6 27 Fold:Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin Superfamily:Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin Family:Plant lipid-transfer and hydrophobic proteins 80 d1c01a_ not modelled 10.5 27 Fold:gamma-Crystallin-like Superfamily:gamma-Crystallin-like Family:Plant antimicrobial protein MIAMP1 81 d1nn7a_ not modelled 10.3 14 Fold:POZ domain Superfamily:POZ domain Family:Tetramerization domain of potassium channels 82 d1j20a2 not modelled 10.3 17 Fold:Argininosuccinate synthetase, C-terminal domain Superfamily:Argininosuccinate synthetase, C-terminal domain Family:Argininosuccinate synthetase, C-terminal domain 83 d1s1ga_ not modelled 10.3 14 Fold:POZ domain Superfamily:POZ domain Family:Tetramerization domain of potassium channels 84 d2esha1 not modelled 10.3 23 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:PadR-like 85 c3bvhC_ not modelled 10.2 31 PDB header:blood clotting Chain: C: PDB Molecule:fibrinogen gamma chain; PDBTitle: crystal structure of recombinant gammad364a fibrinogen fragment d with2 the peptide ligand gly-pro-arg-pro-amide 86 c2kmgA_ not modelled 10.2 26 PDB header:gene regulation Chain: A: PDB Molecule:klca; PDBTitle: the structure of the klca and ardb proteins show a novel2 fold and antirestriction activity against type i dna3 restriction systems in vivo but not in vitro 87 c2rnjA_ not modelled 10.2 15 PDB header:transcription Chain: A: PDB Molecule:response regulator protein vrar; PDBTitle: nmr structure of the s. aureus vrar dna binding domain 88 d1ofda3 not modelled 10.1 21 Fold:Ntn hydrolase-like Superfamily:N-terminal nucleophile aminohydrolases (Ntn hydrolases) Family:Class II glutamine amidotransferases 89 c1nexC_ not modelled 10.0 36 PDB header:ligase, cell cycle Chain: C: PDB Molecule:centromere dna-binding protein complex cbf3 PDBTitle: crystal structure of scskp1-sccdc4-cpd peptide complex 90 c2q0oA_ not modelled 10.0 2 PDB header:transcription Chain: A: PDB Molecule:probable transcriptional activator protein trar; PDBTitle: crystal structure of an anti-activation complex in bacterial quorum2 sensing 91 d2c9wc1 not modelled 10.0 36 Fold:POZ domain Superfamily:POZ domain Family:BTB/POZ domain 92 c1lm1A_ not modelled 9.9 18 PDB header:oxidoreductase Chain: A: PDB Molecule:ferredoxin-dependent glutamate synthase; PDBTitle: structural studies on the synchronization of catalytic centers in2 glutamate synthase: native enzyme 93 d1ug7a_ not modelled 9.8 16 Fold:Four-helical up-and-down bundle Superfamily:Domain from hypothetical 2610208m17rik protein Family:Domain from hypothetical 2610208m17rik protein 94 c3k8kB_ not modelled 9.8 21 PDB header:membrane protein Chain: B: PDB Molecule:alpha-amylase, susg; PDBTitle: crystal structure of susg 95 d1ht6a2 not modelled 9.8 10 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:Amylase, catalytic domain 96 c2cblA_ not modelled 9.8 15 PDB header:complex (proto-oncogene/peptide) Chain: A: PDB Molecule:proto-oncogene cbl; PDBTitle: n-terminal domain of cbl in complex with its binding site2 on zap-70 97 d1inza_ not modelled 9.8 13 Fold:alpha-alpha superhelix Superfamily:ENTH/VHS domain Family:ENTH domain 98 d1ea9c3 not modelled 9.8 18 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:Amylase, catalytic domain 99 c3excX_ not modelled 9.7 15 PDB header:hydrolase Chain: X: PDB Molecule:uncharacterized protein; PDBTitle: structure of the rna'se sso8090 from sulfolobus solfataricus